Wall clock time and date at job start Fri Apr 10 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46983 * 2 1 4 4 O 1.42900 * 109.46819 * 240.00224 * 2 1 3 5 5 C 1.50694 * 109.47043 * 120.00157 * 2 1 3 6 6 N 1.29024 * 124.92101 * 74.97673 * 5 2 1 7 7 C 1.31781 * 117.12888 * 180.02562 * 6 5 2 8 8 C 1.33638 * 114.49997 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.03883 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47223 * 89.99899 * 9 8 7 11 11 C 1.47443 * 111.00227 * 69.87126 * 10 9 8 12 12 C 1.54312 * 107.23612 * 236.74273 * 11 10 9 13 13 C 1.55142 * 103.17714 * 337.62814 * 12 11 10 14 14 O 1.42900 * 110.99267 * 277.64922 * 13 12 11 15 15 C 1.50700 * 110.99048 * 153.83199 * 13 12 11 16 16 H 1.08004 * 119.99851 * 241.45911 * 15 13 12 17 17 C 1.37875 * 120.00057 * 61.45406 * 15 13 12 18 18 N 1.31517 * 120.00100 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00140 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46947 * 60.00160 * 19 17 15 21 21 H 1.48494 * 109.47096 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47157 * 300.00184 * 19 17 15 23 23 C 1.47844 * 110.99982 * 309.02970 * 10 9 8 24 24 S 1.70983 * 124.91543 * 255.28703 * 5 2 1 25 25 H 1.09005 * 109.47405 * 299.99937 * 1 2 3 26 26 H 1.09002 * 109.47494 * 59.99848 * 1 2 3 27 27 H 1.09003 * 109.47235 * 180.02562 * 1 2 3 28 28 H 0.96695 * 113.99782 * 299.99625 * 4 2 1 29 29 H 1.07998 * 122.75194 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.47013 * 329.99874 * 9 8 7 31 31 H 1.08994 * 109.47127 * 209.99700 * 9 8 7 32 32 H 1.08997 * 109.88254 * 117.33308 * 11 10 9 33 33 H 1.09001 * 110.02167 * 356.22840 * 11 10 9 34 34 H 1.09002 * 110.70596 * 96.10119 * 12 11 10 35 35 H 1.09005 * 110.70742 * 219.16269 * 12 11 10 36 36 H 0.96696 * 113.99925 * 298.54409 * 14 13 12 37 37 H 0.96993 * 120.00152 * 179.97438 * 18 17 15 38 38 H 1.08999 * 110.37744 * 265.19940 * 23 10 9 39 39 H 1.09008 * 110.37208 * 27.53592 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2304 6 7 2.0200 -1.9892 1.4017 7 6 2.4983 -2.4475 2.5409 8 6 2.9393 -1.5028 3.3769 9 6 3.5352 -1.7343 4.7416 10 7 4.9900 -1.8977 4.6193 11 6 5.6360 -0.6234 4.2548 12 6 6.4266 -0.8677 2.9523 13 6 6.6516 -2.4027 2.9578 14 8 7.7734 -2.7527 3.7709 15 6 6.8189 -2.9289 1.5556 16 1 6.1179 -3.6503 1.1623 17 6 7.8667 -2.4892 0.7747 18 7 8.7205 -1.6110 1.2538 19 14 8.0745 -3.1419 -0.9631 20 1 6.8677 -2.8121 -1.7633 21 1 9.2686 -2.5174 -1.5870 22 1 8.2525 -4.6156 -0.9205 23 6 5.3254 -2.9063 3.5918 24 16 2.6942 0.0620 2.6047 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7210 -1.5951 -1.2329 29 1 2.5321 -3.5004 2.7790 30 1 3.1039 -2.6351 5.1783 31 1 3.3182 -0.8800 5.3826 32 1 6.3155 -0.3120 5.0482 33 1 4.8802 0.1448 4.0914 34 1 5.8406 -0.5672 2.0837 35 1 7.3792 -0.3385 2.9746 36 1 8.6109 -2.3751 3.4692 37 1 9.4579 -1.3020 0.7046 38 1 5.4724 -3.8831 4.0525 39 1 4.5396 -2.9559 2.8379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261494271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:00 Heat of formation + Delta-G solvation = -46.759353 kcal Electronic energy + Delta-G solvation = -23045.697821 eV Core-core repulsion = 19694.240558 eV Total energy + Delta-G solvation = -3351.457263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.96893 -38.47004 -37.07324 -34.94053 -32.12003 -31.91597 -30.80301 -28.60698 -28.11517 -26.27292 -24.96510 -23.48018 -22.51931 -20.32275 -19.64418 -19.19606 -18.11236 -17.08388 -16.61328 -15.43072 -15.31468 -15.12591 -14.85909 -14.61804 -14.25540 -14.06325 -13.81274 -13.49951 -12.86629 -12.74120 -12.36015 -12.19097 -12.13542 -11.57795 -11.50048 -11.34978 -11.24575 -11.00379 -10.86512 -10.74917 -10.58873 -10.43022 -10.31316 -9.87242 -9.43834 -9.22985 -9.04530 -8.60724 -8.55924 -8.08867 -7.79403 -6.18708 -4.26183 0.81551 1.46663 1.87395 2.97345 3.27506 3.31001 3.35390 4.01008 4.32413 4.43818 4.62384 4.79165 4.88655 5.06567 5.10984 5.18711 5.21966 5.50422 5.64290 5.66322 5.78309 5.82405 5.88370 5.98659 6.07406 6.15650 6.32095 6.43698 6.63494 6.83859 7.05374 7.40622 7.48901 7.52311 7.53004 7.61324 7.83775 7.84911 8.17736 8.75323 9.41896 9.52162 10.88355 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.006758 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.704331 B = 4141.970272 C = 5521.445721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.188 3.812 3 H 0.114 0.886 4 O -0.545 6.545 5 C -0.001 4.001 6 N -0.461 5.461 7 C 0.045 3.955 8 C -0.236 4.236 9 C 0.122 3.878 10 N -0.510 5.510 11 C 0.039 3.961 12 C -0.141 4.141 13 C 0.256 3.744 14 O -0.580 6.580 15 C -0.532 4.532 16 H 0.058 0.942 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.896 3.104 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.043 3.957 24 S 0.132 5.868 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.386 0.614 29 H 0.174 0.826 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.377 0.623 37 H 0.267 0.733 38 H 0.070 0.930 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.509 4.928 2.187 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.125 3.875 3 H 0.131 0.869 4 O -0.351 6.351 5 C -0.280 4.280 6 N -0.176 5.176 7 C -0.107 4.107 8 C -0.359 4.359 9 C -0.009 4.009 10 N -0.232 5.232 11 C -0.089 4.089 12 C -0.180 4.180 13 C 0.215 3.785 14 O -0.388 6.388 15 C -0.571 4.571 16 H 0.076 0.924 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.084 4.084 24 S 0.387 5.613 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.234 0.766 29 H 0.191 0.809 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.362 5.832 2.707 15.735 hybrid contribution 0.156 -1.154 -1.769 2.118 sum -14.205 4.678 0.938 14.985 Atomic orbital electron populations 1.22470 0.94460 1.03539 1.03001 1.20367 0.93192 0.94785 0.79152 0.86872 1.86577 1.77440 1.30017 1.41044 1.27857 1.04147 0.93670 1.02285 1.66027 1.18070 1.12030 1.21508 1.21597 0.99558 1.00995 0.88524 1.26971 1.08532 0.94600 1.05775 1.21066 0.89005 1.02431 0.88437 1.64060 1.04621 1.08204 1.46297 1.22936 0.97122 0.89914 0.98935 1.23224 0.99736 1.01344 0.93670 1.19567 0.82563 0.88481 0.87872 1.86136 1.19295 1.77162 1.56210 1.21436 1.12008 1.25739 0.97902 0.92383 1.24961 0.95297 0.94104 0.98545 1.69720 1.15351 1.30784 1.37637 0.86578 0.77680 0.79310 0.84076 1.20020 1.21117 1.20054 1.23395 0.98059 0.94825 0.92090 1.83795 1.55854 1.10838 1.10831 0.91400 0.90806 0.91417 0.76569 0.80910 0.88913 0.90193 0.91338 0.94572 0.92751 0.90493 0.77409 0.92362 0.91161 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 9.52 37.16 0.35 -1.28 16 2 C 0.19 2.33 4.10 -27.89 -0.11 2.21 16 3 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 4 O -0.55 -7.82 13.32 -35.23 -0.47 -8.29 16 5 C 0.00 -0.02 6.28 -13.46 -0.08 -0.11 16 6 N -0.46 -7.46 10.37 -11.87 -0.12 -7.58 16 7 C 0.05 0.72 9.17 -19.19 -0.18 0.54 16 8 C -0.24 -3.64 4.61 -35.92 -0.17 -3.80 16 9 C 0.12 1.82 5.82 -4.98 -0.03 1.79 16 10 N -0.51 -9.64 5.41 -232.38 -1.26 -10.90 16 11 C 0.04 0.75 6.46 -2.84 -0.02 0.73 16 12 C -0.14 -3.28 5.36 -24.91 -0.13 -3.41 16 13 C 0.26 6.40 0.88 -89.38 -0.08 6.32 16 14 O -0.58 -15.32 13.16 -35.23 -0.46 -15.78 16 15 C -0.53 -14.60 8.28 -34.44 -0.29 -14.88 16 16 H 0.06 1.61 7.79 -52.48 -0.41 1.20 16 17 C 0.07 1.99 5.29 -17.82 -0.09 1.90 16 18 N -0.90 -24.33 10.75 55.43 0.60 -23.74 16 19 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.04 0.93 5.68 -2.04 -0.01 0.92 16 24 S 0.13 1.90 21.83 -107.50 -2.35 -0.45 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.39 4.76 8.90 45.56 0.41 5.16 16 29 H 0.17 2.52 7.90 -52.49 -0.41 2.10 16 30 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 32 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.04 0.63 5.98 -51.93 -0.31 0.32 16 34 H 0.05 1.34 8.03 -51.93 -0.42 0.92 16 35 H 0.08 1.91 7.53 -51.93 -0.39 1.52 16 36 H 0.38 10.02 7.56 45.56 0.34 10.36 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.06 1.32 4.29 -51.92 -0.22 1.10 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -30.08 328.48 -8.90 -38.98 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -3.93 Total: 15.47 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -0.84 Total: -9.08 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.79 Total: -42.22 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.93 Total: -24.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.35 Total: -0.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.08 -8.90 -38.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261494271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.779 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds