Wall clock time and date at job start Fri Apr 10 2020 20:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46983 * 2 1 4 4 O 1.42900 * 109.46819 * 240.00224 * 2 1 3 5 5 C 1.50694 * 109.47043 * 120.00157 * 2 1 3 6 6 N 1.29024 * 124.92101 * 74.97673 * 5 2 1 7 7 C 1.31781 * 117.12888 * 180.02562 * 6 5 2 8 8 C 1.33638 * 114.49997 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.03883 * 180.02562 * 8 7 6 10 10 N 1.46900 * 109.47223 * 89.99899 * 9 8 7 11 11 C 1.47443 * 111.00227 * 69.87126 * 10 9 8 12 12 C 1.54312 * 107.23612 * 236.74273 * 11 10 9 13 13 C 1.55142 * 103.17714 * 337.62814 * 12 11 10 14 14 O 1.42900 * 110.99267 * 277.64922 * 13 12 11 15 15 C 1.50700 * 110.99048 * 153.83199 * 13 12 11 16 16 H 1.08004 * 119.99851 * 241.45911 * 15 13 12 17 17 C 1.37875 * 120.00057 * 61.45406 * 15 13 12 18 18 N 1.31517 * 120.00100 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00140 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.46947 * 60.00160 * 19 17 15 21 21 H 1.48494 * 109.47096 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47157 * 300.00184 * 19 17 15 23 23 C 1.47844 * 110.99982 * 309.02970 * 10 9 8 24 24 S 1.70983 * 124.91543 * 255.28703 * 5 2 1 25 25 H 1.09005 * 109.47405 * 299.99937 * 1 2 3 26 26 H 1.09002 * 109.47494 * 59.99848 * 1 2 3 27 27 H 1.09003 * 109.47235 * 180.02562 * 1 2 3 28 28 H 0.96695 * 113.99782 * 299.99625 * 4 2 1 29 29 H 1.07998 * 122.75194 * 180.02562 * 7 6 5 30 30 H 1.08999 * 109.47013 * 329.99874 * 9 8 7 31 31 H 1.08994 * 109.47127 * 209.99700 * 9 8 7 32 32 H 1.08997 * 109.88254 * 117.33308 * 11 10 9 33 33 H 1.09001 * 110.02167 * 356.22840 * 11 10 9 34 34 H 1.09002 * 110.70596 * 96.10119 * 12 11 10 35 35 H 1.09005 * 110.70742 * 219.16269 * 12 11 10 36 36 H 0.96696 * 113.99925 * 298.54409 * 14 13 12 37 37 H 0.96993 * 120.00152 * 179.97438 * 18 17 15 38 38 H 1.08999 * 110.37744 * 265.19940 * 23 10 9 39 39 H 1.09008 * 110.37208 * 27.53592 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2304 6 7 2.0200 -1.9892 1.4017 7 6 2.4983 -2.4475 2.5409 8 6 2.9393 -1.5028 3.3769 9 6 3.5352 -1.7343 4.7416 10 7 4.9900 -1.8977 4.6193 11 6 5.6360 -0.6234 4.2548 12 6 6.4266 -0.8677 2.9523 13 6 6.6516 -2.4027 2.9578 14 8 7.7734 -2.7527 3.7709 15 6 6.8189 -2.9289 1.5556 16 1 6.1179 -3.6503 1.1623 17 6 7.8667 -2.4892 0.7747 18 7 8.7205 -1.6110 1.2538 19 14 8.0745 -3.1419 -0.9631 20 1 6.8677 -2.8121 -1.7633 21 1 9.2686 -2.5174 -1.5870 22 1 8.2525 -4.6156 -0.9205 23 6 5.3254 -2.9063 3.5918 24 16 2.6942 0.0620 2.6047 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.7210 -1.5951 -1.2329 29 1 2.5321 -3.5004 2.7790 30 1 3.1039 -2.6351 5.1783 31 1 3.3182 -0.8800 5.3826 32 1 6.3155 -0.3120 5.0482 33 1 4.8802 0.1448 4.0914 34 1 5.8406 -0.5672 2.0837 35 1 7.3792 -0.3385 2.9746 36 1 8.6109 -2.3751 3.4692 37 1 9.4579 -1.3020 0.7046 38 1 5.4724 -3.8831 4.0525 39 1 4.5396 -2.9559 2.8379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261494271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:00 Heat of formation + Delta-G solvation = -72.006656 kcal Electronic energy + Delta-G solvation = -23046.792626 eV Core-core repulsion = 19694.240558 eV Total energy + Delta-G solvation = -3352.552068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21376 -40.00292 -38.20220 -36.71718 -34.21035 -33.20881 -32.04118 -30.15472 -29.75124 -27.66565 -26.51780 -24.91790 -23.61653 -21.92582 -21.44218 -20.39139 -19.30483 -19.07789 -17.74201 -16.97952 -16.85317 -16.74243 -16.23290 -16.08181 -15.60316 -15.37686 -15.30949 -14.82984 -14.40134 -14.11868 -13.88790 -13.49739 -13.35682 -13.15861 -12.98353 -12.91692 -12.78205 -12.62788 -12.36269 -12.31320 -12.23960 -12.13390 -11.68799 -11.62465 -11.13170 -10.64819 -10.57489 -10.26956 -10.10243 -9.76895 -9.31920 -8.25354 -6.39608 -0.34901 0.33352 0.70644 1.35510 1.36289 1.43558 1.78374 2.33685 2.95938 2.99202 3.14881 3.48257 3.83706 3.85339 3.92551 4.01425 4.03254 4.14074 4.22489 4.31519 4.42370 4.70705 4.71344 4.76263 4.77300 4.86829 4.88036 5.05077 5.09001 5.22172 5.24633 5.46088 5.52208 5.76035 5.87672 6.13317 6.19230 6.53974 6.64454 6.69709 7.31403 7.43087 8.79704 Molecular weight = 298.11amu Principal moments of inertia in cm(-1) A = 0.013565 B = 0.006758 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.704331 B = 4141.970272 C = 5521.445721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.181 3.819 3 H 0.125 0.875 4 O -0.565 6.565 5 C -0.006 4.006 6 N -0.482 5.482 7 C 0.032 3.968 8 C -0.248 4.248 9 C 0.122 3.878 10 N -0.513 5.513 11 C 0.048 3.952 12 C -0.128 4.128 13 C 0.238 3.762 14 O -0.588 6.588 15 C -0.556 4.556 16 H 0.045 0.955 17 C 0.034 3.966 18 N -0.908 5.908 19 Si 0.949 3.051 20 H -0.278 1.278 21 H -0.277 1.277 22 H -0.273 1.273 23 C 0.054 3.946 24 S 0.152 5.848 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.391 0.609 29 H 0.180 0.820 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.371 0.629 37 H 0.269 0.731 38 H 0.063 0.937 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.818 5.633 2.384 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.118 3.882 3 H 0.142 0.858 4 O -0.371 6.371 5 C -0.284 4.284 6 N -0.198 5.198 7 C -0.119 4.119 8 C -0.371 4.371 9 C -0.009 4.009 10 N -0.234 5.234 11 C -0.080 4.080 12 C -0.168 4.168 13 C 0.198 3.802 14 O -0.395 6.395 15 C -0.594 4.594 16 H 0.064 0.936 17 C -0.167 4.167 18 N -0.547 5.547 19 Si 0.775 3.225 20 H -0.204 1.204 21 H -0.202 1.202 22 H -0.198 1.198 23 C -0.073 4.073 24 S 0.407 5.593 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.240 0.760 29 H 0.197 0.803 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.220 0.780 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.684 6.541 2.916 17.242 hybrid contribution 0.543 -1.356 -1.853 2.359 sum -15.141 5.185 1.063 16.039 Atomic orbital electron populations 1.22392 0.91925 1.03666 1.04421 1.20705 0.95168 0.94665 0.77618 0.85772 1.86545 1.78081 1.30633 1.41871 1.28376 1.03385 0.93569 1.03077 1.66053 1.19061 1.12797 1.21872 1.21825 0.99734 1.01646 0.88723 1.27025 1.08963 0.95147 1.05970 1.21227 0.86328 1.04640 0.88671 1.63981 1.07439 1.07135 1.44890 1.22830 0.97428 0.90919 0.96790 1.22963 0.98916 0.99850 0.95029 1.19807 0.83404 0.89796 0.87238 1.86130 1.19493 1.77401 1.56465 1.21680 1.12240 1.25999 0.99502 0.93627 1.25586 0.95140 0.94364 1.01565 1.69794 1.15400 1.31004 1.38510 0.85752 0.77564 0.78845 0.80342 1.20405 1.20175 1.19799 1.23187 0.96352 0.95180 0.92617 1.83644 1.55306 1.10013 1.10364 0.90120 0.89191 0.91924 0.75961 0.80311 0.86858 0.87790 0.90990 0.92324 0.94634 0.92668 0.78039 0.92197 0.91886 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 9.52 71.98 0.68 -2.04 16 2 C 0.18 4.21 4.10 29.85 0.12 4.33 16 3 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 4 O -0.56 -15.72 13.32 -148.98 -1.99 -17.70 16 5 C -0.01 -0.17 6.28 88.52 0.56 0.38 16 6 N -0.48 -15.19 10.37 -191.45 -1.99 -17.18 16 7 C 0.03 1.00 9.17 83.66 0.77 1.77 16 8 C -0.25 -7.21 4.61 24.64 0.11 -7.09 16 9 C 0.12 3.30 5.82 85.56 0.50 3.80 16 10 N -0.51 -18.48 5.41 -889.11 -4.81 -23.29 16 11 C 0.05 1.80 6.46 86.64 0.56 2.36 16 12 C -0.13 -5.99 5.36 31.77 0.17 -5.82 16 13 C 0.24 11.97 0.88 -9.99 -0.01 11.96 16 14 O -0.59 -31.35 13.16 -148.98 -1.96 -33.31 16 15 C -0.56 -30.85 8.28 25.60 0.21 -30.64 16 16 H 0.05 2.57 7.79 -2.91 -0.02 2.55 16 17 C 0.03 1.88 5.29 84.65 0.45 2.33 16 18 N -0.91 -49.66 10.75 21.45 0.23 -49.43 16 19 Si 0.95 44.06 29.54 68.60 2.03 46.09 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.05 2.31 5.68 86.94 0.49 2.80 16 24 S 0.15 4.07 21.83 -56.49 -1.23 2.83 16 25 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.39 9.51 8.90 -74.06 -0.66 8.85 16 29 H 0.18 5.08 7.90 -2.91 -0.02 5.06 16 30 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.10 2.36 8.04 -2.39 -0.02 2.34 16 32 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.06 1.91 5.98 -2.39 -0.01 1.90 16 34 H 0.03 1.75 8.03 -2.39 -0.02 1.73 16 35 H 0.05 2.77 7.53 -2.38 -0.02 2.75 16 36 H 0.37 20.14 7.56 -74.06 -0.56 19.58 16 37 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 38 H 0.06 2.75 8.14 -2.39 -0.02 2.74 16 39 H 0.07 2.73 4.29 -2.38 -0.01 2.72 16 Total: -1.00 -63.64 328.48 -5.24 -68.87 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.13 Total: 38.97 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.62 Total: -15.86 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -6.57 Total: -89.90 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -3.95 Total: -51.01 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.23 Total: 2.83 kcal Total: -63.64 -5.24 -68.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261494271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.133 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds