Wall clock time and date at job start Fri Apr 10 2020 20:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38327 * 120.04179 * 2 1 4 4 F 1.35100 * 119.99572 * 359.97438 * 3 2 1 5 5 C 1.38669 * 120.00465 * 180.02562 * 3 2 1 6 6 F 1.35101 * 119.96178 * 179.97438 * 5 3 2 7 7 C 1.38420 * 120.06618 * 359.97438 * 5 3 2 8 8 C 1.38133 * 120.07330 * 359.97438 * 7 5 3 9 9 C 1.38811 * 120.03117 * 180.25374 * 2 1 3 10 10 N 1.40051 * 120.03515 * 0.02562 * 9 2 1 11 11 C 1.34781 * 119.99991 * 205.01878 * 10 9 2 12 12 O 1.21588 * 120.00024 * 5.63907 * 11 10 9 13 13 N 1.34771 * 120.00110 * 185.63330 * 11 10 9 14 14 C 1.46503 * 119.99885 * 0.02562 * 13 11 10 15 15 C 1.46501 * 120.00121 * 180.02562 * 13 11 10 16 16 H 1.08998 * 109.46910 * 0.02562 * 15 13 11 17 17 C 1.52992 * 109.47191 * 239.99953 * 15 13 11 18 18 C 1.50703 * 109.47004 * 120.00117 * 15 13 11 19 19 H 1.08006 * 120.00117 * 5.15646 * 18 15 13 20 20 C 1.37880 * 120.00082 * 185.15928 * 18 15 13 21 21 N 1.31522 * 119.99458 * 5.07064 * 20 18 15 22 22 Si 1.86794 * 120.00136 * 185.06994 * 20 18 15 23 23 H 1.48495 * 109.47029 * 94.99982 * 22 20 18 24 24 H 1.48503 * 109.46987 * 214.99675 * 22 20 18 25 25 H 1.48498 * 109.47494 * 334.99828 * 22 20 18 26 26 H 1.08999 * 109.46820 * 89.99896 * 1 2 3 27 27 H 1.08993 * 109.47368 * 210.00289 * 1 2 3 28 28 H 1.08999 * 109.46794 * 330.00566 * 1 2 3 29 29 H 1.08003 * 119.96317 * 179.97438 * 7 5 3 30 30 H 1.07991 * 120.00410 * 180.02562 * 8 7 5 31 31 H 0.97002 * 120.00139 * 25.01802 * 10 9 2 32 32 H 1.08995 * 109.46695 * 90.00293 * 14 13 11 33 33 H 1.08996 * 109.47116 * 209.99783 * 14 13 11 34 34 H 1.08998 * 109.47155 * 330.00089 * 14 13 11 35 35 H 1.09001 * 109.47373 * 174.97605 * 17 15 13 36 36 H 1.09006 * 109.47373 * 294.97466 * 17 15 13 37 37 H 1.09005 * 109.47363 * 54.97513 * 17 15 13 38 38 H 0.97003 * 119.99230 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.1974 0.0000 4 9 1.5247 2.3679 -0.0005 5 6 3.5862 1.1965 -0.0005 6 9 4.2616 2.3666 -0.0011 7 6 4.2789 -0.0019 -0.0005 8 6 3.5903 -1.1994 0.0005 9 6 2.2017 -1.2018 -0.0053 10 7 1.5028 -2.4154 -0.0112 11 6 2.0830 -3.5295 0.4775 12 8 3.1709 -3.4622 1.0162 13 7 1.4572 -4.7182 0.3691 14 6 0.1465 -4.7994 -0.2805 15 6 2.0875 -5.9291 0.9007 16 1 3.0499 -5.6731 1.3438 17 6 2.2987 -6.9341 -0.2333 18 6 1.1970 -6.5385 1.9527 19 1 0.2197 -6.1193 2.1419 20 6 1.6297 -7.6312 2.6737 21 7 2.8556 -8.0802 2.5147 22 14 0.4749 -8.4737 3.8762 23 1 -0.1851 -9.6228 3.2061 24 1 1.2484 -8.9608 5.0466 25 1 -0.5564 -7.5074 4.3318 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 5.3589 -0.0006 -0.0014 30 1 4.1319 -2.1337 0.0009 31 1 0.6012 -2.4543 -0.3670 32 1 0.2803 -4.9785 -1.3472 33 1 -0.4254 -5.6180 0.1564 34 1 -0.3904 -3.8622 -0.1338 35 1 2.8473 -7.7973 0.1436 36 1 1.3310 -7.2578 -0.6168 37 1 2.8681 -6.4634 -1.0347 38 1 3.1599 -8.8492 3.0217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334904792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:05 Heat of formation + Delta-G solvation = -83.841872 kcal Electronic energy + Delta-G solvation = -24154.625862 eV Core-core repulsion = 20247.720194 eV Total energy + Delta-G solvation = -3906.905668 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.43428 -48.50310 -40.60893 -38.55758 -35.64297 -34.61807 -32.87932 -32.49092 -29.90253 -28.71691 -27.13567 -26.29851 -25.26955 -23.33912 -22.10468 -21.20186 -19.50747 -18.48390 -17.53804 -17.29373 -16.76290 -16.37939 -16.34286 -15.64766 -15.23269 -15.01570 -14.92613 -14.37425 -14.27274 -13.73152 -13.66311 -13.38824 -13.12096 -13.08038 -12.71468 -12.58291 -12.10353 -11.92427 -11.80396 -11.67226 -11.32242 -11.08951 -10.97697 -10.80365 -10.37698 -10.25730 -10.21981 -9.44917 -9.27810 -8.83302 -8.50047 -8.06898 -7.67044 -6.15699 -4.22139 0.95558 0.98355 2.87364 3.21661 3.23217 3.30202 3.32327 3.76189 3.82994 4.22599 4.33705 4.37698 4.53980 4.79283 4.88435 5.17427 5.25702 5.33600 5.36525 5.45269 5.63155 5.81458 5.82075 5.89832 6.05452 6.18009 6.26483 6.45777 6.57390 6.64220 6.85767 6.93240 6.98345 7.29955 7.58473 7.64510 7.89069 8.08861 8.44559 8.77172 8.99830 9.44046 10.91628 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.003518 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.599412 B = 7957.517474 C = 8253.672269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.141 4.141 3 C 0.087 3.913 4 F -0.129 7.129 5 C 0.035 3.965 6 F -0.136 7.136 7 C -0.106 4.106 8 C -0.111 4.111 9 C 0.207 3.793 10 N -0.687 5.687 11 C 0.696 3.304 12 O -0.572 6.572 13 N -0.599 5.599 14 C 0.081 3.919 15 C 0.270 3.730 16 H 0.072 0.928 17 C -0.141 4.141 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.068 3.932 21 N -0.884 5.884 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.147 0.853 30 H 0.168 0.832 31 H 0.406 0.594 32 H 0.047 0.953 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.033 0.967 37 H 0.015 0.985 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 13.317 -8.246 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.146 4.146 3 C 0.066 3.934 4 F -0.108 7.108 5 C 0.014 3.986 6 F -0.114 7.114 7 C -0.125 4.125 8 C -0.132 4.132 9 C 0.108 3.892 10 N -0.335 5.335 11 C 0.398 3.602 12 O -0.450 6.450 13 N -0.332 5.332 14 C -0.063 4.063 15 C 0.170 3.830 16 H 0.090 0.910 17 C -0.200 4.200 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.136 4.136 21 N -0.522 5.522 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.165 0.835 30 H 0.186 0.814 31 H 0.244 0.756 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.052 0.948 37 H 0.034 0.966 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.282 13.107 -7.779 15.591 hybrid contribution -1.176 -0.102 0.539 1.297 sum -4.458 13.005 -7.240 15.537 Atomic orbital electron populations 1.20647 0.89469 1.03863 1.02890 1.19324 0.97155 0.89945 1.08152 1.17025 0.87985 0.81496 1.06912 1.91483 1.80010 1.45214 1.94090 1.17560 0.88123 0.82547 1.10356 1.91489 1.79799 1.45648 1.94491 1.20981 1.01176 0.89706 1.00649 1.21547 0.92525 0.99736 0.99373 1.17178 0.91160 0.84032 0.96855 1.43080 1.19083 1.06404 1.64900 1.15977 0.84437 0.80287 0.79532 1.90847 1.20847 1.84517 1.48749 1.47667 1.19376 1.07008 1.59196 1.21603 0.85748 1.01901 0.97052 1.18964 0.95363 0.77711 0.90967 0.91046 1.22038 0.99465 1.01336 0.97112 1.21285 1.02300 1.13779 1.19662 0.92192 1.24888 0.95064 0.96999 0.96621 1.69941 1.15592 1.25025 1.41623 0.86495 0.80700 0.79668 0.80620 1.20610 1.21077 1.19919 0.90559 0.90849 0.90566 0.83543 0.81443 0.75586 0.93482 0.89408 0.93585 0.90150 0.94775 0.96594 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.26 36.00 0.33 -0.74 16 2 C -0.14 -1.77 5.90 -104.38 -0.62 -2.39 16 3 C 0.09 1.15 7.24 -39.39 -0.29 0.86 16 4 F -0.13 -1.72 16.39 2.25 0.04 -1.68 16 5 C 0.04 0.48 7.30 -39.36 -0.29 0.19 16 6 F -0.14 -1.87 17.18 2.25 0.04 -1.83 16 7 C -0.11 -1.36 10.02 -39.55 -0.40 -1.75 16 8 C -0.11 -1.64 8.72 -39.39 -0.34 -1.99 16 9 C 0.21 2.95 6.41 -83.66 -0.54 2.42 16 10 N -0.69 -10.03 4.85 -14.21 -0.07 -10.09 16 11 C 0.70 13.43 8.09 -86.92 -0.70 12.73 16 12 O -0.57 -13.06 12.83 5.29 0.07 -12.99 16 13 N -0.60 -11.74 2.75 -181.01 -0.50 -12.23 16 14 C 0.08 1.19 9.34 59.85 0.56 1.75 16 15 C 0.27 6.47 2.51 -69.08 -0.17 6.30 16 16 H 0.07 2.01 6.88 -51.93 -0.36 1.66 16 17 C -0.14 -3.12 8.89 37.15 0.33 -2.79 16 18 C -0.53 -13.66 8.02 -34.44 -0.28 -13.94 16 19 H 0.06 1.51 7.15 -52.48 -0.38 1.13 16 20 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 21 N -0.88 -24.37 11.97 55.43 0.66 -23.71 16 22 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.67 7.00 -51.93 -0.36 0.31 16 28 H 0.08 0.70 7.64 -51.93 -0.40 0.31 16 29 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16 30 H 0.17 2.80 5.78 -52.49 -0.30 2.50 16 31 H 0.41 4.66 5.11 -40.82 -0.21 4.45 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.39 6.92 -51.93 -0.36 1.03 16 34 H 0.05 0.52 6.29 -51.93 -0.33 0.19 16 35 H 0.08 1.97 6.82 -51.93 -0.35 1.61 16 36 H 0.03 0.69 7.84 -51.93 -0.41 0.29 16 37 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -29.61 322.03 -6.69 -36.30 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.28 Total: 3.72 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.49 Total: 2.33 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.10 Total: -46.04 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.07 Total: -12.99 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.08 Total: -3.51 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.61 -6.69 -36.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334904792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.538 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds