Wall clock time and date at job start Fri Apr 10 2020 20:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86801 * 120.00006 * 2 1 4 4 H 1.48502 * 109.47555 * 270.00245 * 3 2 1 5 5 H 1.48502 * 109.46917 * 30.00591 * 3 2 1 6 6 H 1.48501 * 109.47067 * 150.00063 * 3 2 1 7 7 C 1.40023 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.41319 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.40589 * 119.78679 * 180.02562 * 9 7 2 11 11 C 1.38350 * 119.14771 * 180.02562 * 10 9 7 12 12 C 1.38637 * 118.68174 * 359.74755 * 11 10 9 13 13 C 1.39759 * 119.49027 * 0.47386 * 12 11 10 14 14 N 1.38823 * 119.58508 * 179.79146 * 13 12 11 15 15 C 1.47161 * 111.00253 * 178.77220 * 14 13 12 16 16 C 1.52894 * 108.52039 * 165.35596 * 15 14 13 17 17 C 1.50717 * 109.96899 * 50.40163 * 16 15 14 18 18 C 1.38642 * 118.47250 * 163.16687 * 17 16 15 19 19 C 1.38248 * 120.33214 * 179.51430 * 18 17 16 20 20 F 1.35097 * 120.11649 * 179.97438 * 19 18 17 21 21 C 1.38492 * 119.77526 * 0.02562 * 19 18 17 22 22 C 1.37968 * 119.83677 * 0.10080 * 21 19 18 23 23 C 1.37855 * 121.65597 * 342.89076 * 17 16 15 24 24 C 1.46623 * 111.00226 * 55.77231 * 14 13 12 25 25 N 1.31978 * 120.83288 * 359.51898 * 13 12 11 26 26 H 0.97002 * 120.00432 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.42571 * 0.02562 * 10 9 7 28 28 H 1.07997 * 120.65891 * 179.97438 * 11 10 9 29 29 H 1.08003 * 120.25957 * 180.26744 * 12 11 10 30 30 H 1.09002 * 109.62384 * 285.07066 * 15 14 13 31 31 H 1.08999 * 109.63074 * 45.44914 * 15 14 13 32 32 H 1.08994 * 109.39896 * 290.23513 * 16 15 14 33 33 H 1.09010 * 109.37152 * 170.54419 * 16 15 14 34 34 H 1.08001 * 119.83280 * 359.51117 * 18 17 16 35 35 H 1.08000 * 120.08044 * 180.02562 * 21 19 18 36 36 H 1.08001 * 119.79261 * 179.97438 * 22 21 19 37 37 H 1.09005 * 109.30048 * 55.73075 * 24 14 13 38 38 H 1.09003 * 109.13477 * 296.25305 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0466 -1.4001 5 1 1.4389 2.6526 0.7002 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2126 -0.0005 8 1 3.0875 -1.2126 -0.0010 9 6 1.3010 -2.4365 -0.0005 10 6 2.0085 -3.6514 -0.0005 11 6 1.3035 -4.8418 -0.0011 12 6 -0.0821 -4.7945 0.0038 13 6 -0.7282 -3.5552 -0.0010 14 7 -2.1155 -3.5056 -0.0006 15 6 -2.5935 -2.1139 0.0233 16 6 -4.0777 -2.1039 -0.3435 17 6 -4.8231 -3.1068 0.4992 18 6 -6.2037 -3.0080 0.5777 19 6 -6.9267 -3.9138 1.3315 20 9 -8.2719 -3.8131 1.4055 21 6 -6.2672 -4.9241 2.0115 22 6 -4.8930 -5.0197 1.9346 23 6 -4.1667 -4.1103 1.1793 24 6 -2.6677 -4.2516 1.1345 25 7 -0.0360 -2.4315 -0.0006 26 1 -0.4851 0.8400 -0.0004 27 1 3.0885 -3.6553 -0.0001 28 1 1.8222 -5.7890 -0.0015 29 1 -0.6578 -5.7082 0.0078 30 1 -2.4602 -1.6982 1.0221 31 1 -2.0310 -1.5211 -0.6980 32 1 -4.1921 -2.3600 -1.3968 33 1 -4.4868 -1.1088 -0.1682 34 1 -6.7170 -2.2195 0.0474 35 1 -6.8271 -5.6345 2.6015 36 1 -4.3794 -5.8076 2.4655 37 1 -2.2417 -3.8658 2.0607 38 1 -2.4080 -5.3050 1.0300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:36:46 Heat of formation + Delta-G solvation = 24.066360 kcal Electronic energy + Delta-G solvation = -23254.952462 eV Core-core repulsion = 19783.495271 eV Total energy + Delta-G solvation = -3471.457191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.118 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.86610 -40.06939 -38.45191 -36.18266 -33.67590 -32.76821 -31.39790 -30.40911 -29.26943 -28.58588 -25.65767 -24.61816 -23.27599 -22.42023 -21.21908 -20.77405 -19.25555 -17.61298 -17.14745 -16.50089 -15.95460 -15.58234 -15.45304 -14.86204 -14.65409 -14.57612 -14.26710 -13.88586 -13.43992 -13.31769 -13.10467 -12.94817 -12.72531 -12.27059 -11.97777 -11.74322 -11.56184 -11.23873 -11.10216 -11.04648 -10.76469 -10.68258 -10.59075 -10.20787 -10.04023 -9.50387 -8.95279 -8.73766 -8.35322 -8.07594 -7.65887 -7.03703 -6.48186 -4.57988 1.19444 1.26517 2.67421 2.95641 3.05510 3.08069 3.17252 3.59522 3.90025 4.26693 4.37446 4.71649 4.73059 4.83978 4.94195 5.18763 5.34310 5.57976 5.68411 5.75405 5.81622 5.87685 5.94251 6.04244 6.06301 6.12397 6.18409 6.30008 6.39068 6.54058 6.60558 6.69229 6.74948 6.85647 6.93965 7.08171 7.13501 7.40799 7.62085 7.73477 7.77251 8.12942 8.30257 8.64427 8.92586 10.01388 10.24395 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.020066 B = 0.004149 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.072543 B = 6746.406684 C = 7902.109028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.431 4.431 8 H 0.083 0.917 9 C 0.275 3.725 10 C -0.293 4.293 11 C -0.045 4.045 12 C -0.321 4.321 13 C 0.320 3.680 14 N -0.475 5.475 15 C 0.070 3.930 16 C -0.085 4.085 17 C -0.032 4.032 18 C -0.157 4.157 19 C 0.089 3.911 20 F -0.146 7.146 21 C -0.161 4.161 22 C -0.087 4.087 23 C -0.080 4.080 24 C 0.104 3.896 25 N -0.507 5.507 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.054 0.946 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.469 -3.984 2.550 10.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.340 5.340 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.462 4.462 8 H 0.101 0.899 9 C 0.149 3.851 10 C -0.316 4.316 11 C -0.069 4.069 12 C -0.346 4.346 13 C 0.082 3.918 14 N -0.194 5.194 15 C -0.057 4.057 16 C -0.122 4.122 17 C -0.033 4.033 18 C -0.176 4.176 19 C 0.070 3.930 20 F -0.124 7.124 21 C -0.179 4.179 22 C -0.106 4.106 23 C -0.081 4.081 24 C -0.023 4.023 25 N -0.225 5.225 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.072 0.928 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.318 -3.242 2.122 11.021 hybrid contribution 0.740 0.131 0.650 0.993 sum -9.578 -3.111 2.772 10.445 Atomic orbital electron populations 1.70077 1.07160 1.27588 1.29131 1.26017 0.94906 1.00945 0.93356 0.86347 0.80496 0.80862 0.79231 1.19417 1.20170 1.18628 1.19596 0.94257 0.89348 1.43032 0.89853 1.18327 0.87343 0.91971 0.87488 1.21658 0.98656 0.93474 1.17801 1.20706 0.93577 0.96611 0.96003 1.20700 0.94333 0.95841 1.23700 1.19754 0.87886 0.90593 0.93581 1.59421 1.06114 1.14575 1.39258 1.21987 0.92022 0.88456 1.03261 1.20789 0.95803 0.96567 0.99053 1.19616 0.92154 0.95607 0.95890 1.21083 0.94196 1.00512 1.01767 1.17605 0.76780 0.97934 1.00672 1.91469 1.29878 1.95924 1.95152 1.20960 0.95116 0.99292 1.02571 1.20881 0.92841 0.98667 0.98207 1.19774 0.95772 0.95135 0.97373 1.20915 0.89188 0.99763 0.92433 1.68635 1.07905 1.24712 1.21224 0.91744 0.88434 0.88542 0.88671 0.93684 0.86536 0.89825 0.90277 0.84969 0.85030 0.85029 0.92820 0.89109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.72 10.96 55.55 0.61 -17.11 16 2 C 0.07 1.76 5.50 -17.35 -0.10 1.67 16 3 Si 0.91 17.94 29.56 -169.99 -5.02 12.92 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.43 -11.12 9.14 -37.74 -0.34 -11.46 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.27 7.28 6.55 -84.99 -0.56 6.72 16 10 C -0.29 -7.06 9.83 -38.65 -0.38 -7.44 16 11 C -0.04 -0.98 10.15 -39.39 -0.40 -1.38 16 12 C -0.32 -7.10 9.29 -38.87 -0.36 -7.46 16 13 C 0.32 7.49 6.39 -155.32 -0.99 6.49 16 14 N -0.48 -9.56 4.70 -174.65 -0.82 -10.38 16 15 C 0.07 1.36 4.92 -3.74 -0.02 1.34 16 16 C -0.08 -1.30 5.94 -27.93 -0.17 -1.47 16 17 C -0.03 -0.48 5.77 -104.60 -0.60 -1.08 16 18 C -0.16 -2.10 9.64 -39.43 -0.38 -2.48 16 19 C 0.09 1.18 7.30 -39.48 -0.29 0.89 16 20 F -0.15 -1.93 17.27 2.25 0.04 -1.89 16 21 C -0.16 -1.93 10.03 -39.59 -0.40 -2.33 16 22 C -0.09 -1.10 9.64 -39.49 -0.38 -1.48 16 23 C -0.08 -1.20 5.79 -104.61 -0.61 -1.80 16 24 C 0.10 1.76 4.87 -5.16 -0.03 1.74 16 25 N -0.51 -13.15 5.97 -10.33 -0.06 -13.21 16 26 H 0.27 6.09 8.29 -40.82 -0.34 5.76 16 27 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.10 1.89 7.17 -52.48 -0.38 1.52 16 30 H 0.04 0.94 8.05 -51.93 -0.42 0.52 16 31 H 0.12 2.59 6.78 -51.93 -0.35 2.24 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.07 8.14 -51.92 -0.42 0.64 16 34 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 38 H 0.09 1.43 6.97 -51.93 -0.36 1.07 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -27.40 320.33 -10.86 -38.27 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.44 Total: 6.13 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -6.00 Total: -19.55 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: -0.27 Total: -40.70 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.92 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.40 -10.86 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.334 kcal (2) G-P(sol) polarization free energy of solvation -27.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds