Wall clock time and date at job start Fri Apr 10 2020 20:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37783 * 119.90560 * 2 1 4 4 C 1.39689 * 119.90466 * 179.74626 * 3 2 1 5 5 C 1.47574 * 120.14067 * 180.24955 * 4 3 2 6 6 O 1.21587 * 119.99793 * 180.25040 * 5 4 3 7 7 N 1.34769 * 119.99890 * 0.25855 * 5 4 3 8 8 C 1.46507 * 119.99793 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.46955 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.47089 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.47178 * 180.02562 * 10 9 8 12 12 C 1.36938 * 120.00156 * 180.02562 * 11 10 9 13 13 H 1.07997 * 119.99714 * 359.97438 * 12 11 10 14 14 C 1.38809 * 120.00151 * 180.02562 * 12 11 10 15 15 N 1.31616 * 119.99968 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99924 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47185 * 59.99810 * 16 14 12 18 18 H 1.48498 * 109.47038 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47116 * 299.99798 * 16 14 12 20 20 C 1.39946 * 119.71610 * 0.50429 * 4 3 2 21 21 F 1.35104 * 120.09358 * 179.76895 * 20 4 3 22 22 C 1.38153 * 119.80723 * 359.49598 * 20 4 3 23 23 C 1.38535 * 120.09302 * 0.27350 * 22 20 4 24 24 F 1.35102 * 119.85416 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.47002 * 269.97615 * 1 2 3 26 26 H 1.09004 * 109.47128 * 29.97686 * 1 2 3 27 27 H 1.09001 * 109.47290 * 149.97934 * 1 2 3 28 28 H 1.07994 * 120.04508 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00469 * 359.97438 * 7 5 4 30 30 H 1.08998 * 109.47110 * 299.99659 * 8 7 5 31 31 H 1.09006 * 109.46741 * 59.99930 * 8 7 5 32 32 H 1.09004 * 109.47451 * 300.00301 * 9 8 7 33 33 H 1.08998 * 109.47342 * 60.00250 * 9 8 7 34 34 H 1.08998 * 109.47064 * 300.00039 * 10 9 8 35 35 H 1.08998 * 109.46803 * 59.99946 * 10 9 8 36 36 H 0.97002 * 119.99712 * 0.02562 * 11 10 9 37 37 H 0.97000 * 119.99734 * 180.02562 * 15 14 12 38 38 H 1.07995 * 119.95012 * 180.24877 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1944 0.0000 4 6 3.5908 1.1944 0.0054 5 6 4.3318 2.4705 0.0109 6 8 5.5477 2.4675 0.0110 7 7 3.6608 3.6393 0.0161 8 6 4.3965 4.9063 0.0223 9 6 3.4051 6.0716 0.0267 10 6 4.1733 7.3948 0.0337 11 7 3.2241 8.5106 0.0386 12 6 3.6837 9.8005 0.0447 13 1 4.7460 9.9952 0.0464 14 6 2.7843 10.8578 0.0499 15 7 1.4897 10.6205 0.0483 16 14 3.4113 12.6174 0.0590 17 1 4.2372 12.8548 -1.1521 18 1 2.2586 13.5536 0.0628 19 1 4.2365 12.8425 1.2728 20 6 4.2845 -0.0210 0.0000 21 9 5.6355 -0.0299 0.0004 22 6 3.5838 -1.2117 0.0000 23 6 2.1985 -1.2025 -0.0004 24 9 1.5182 -2.3697 -0.0009 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6531 2.1292 0.0004 29 1 2.6908 3.6417 0.0158 30 1 5.0229 4.9583 0.9127 31 1 5.0236 4.9665 -0.8673 32 1 2.7788 6.0193 -0.8640 33 1 2.7777 6.0115 0.9160 34 1 4.7992 7.4468 0.9246 35 1 4.8011 7.4551 -0.8553 36 1 2.2700 8.3356 0.0375 37 1 0.8612 11.3593 0.0516 38 1 4.1168 -2.1510 0.0000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160717543.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:06 Heat of formation + Delta-G solvation = -98.875344 kcal Electronic energy + Delta-G solvation = -22633.250105 eV Core-core repulsion = 18725.692537 eV Total energy + Delta-G solvation = -3907.557568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.57585 -49.25964 -40.35811 -38.70715 -36.10722 -34.45891 -33.13027 -32.39646 -31.36250 -29.42299 -27.23573 -25.62299 -24.29390 -23.10163 -22.12970 -21.30655 -20.44136 -18.71627 -17.92398 -17.75099 -16.94791 -16.57716 -16.09604 -15.87241 -15.59354 -15.52015 -15.26329 -14.88848 -14.57233 -14.36908 -13.94982 -13.84581 -13.64778 -13.29778 -13.04031 -12.74392 -12.57886 -12.54821 -12.00563 -11.96243 -11.67658 -11.00254 -10.94146 -10.82543 -10.65101 -10.20829 -10.04430 -9.72569 -9.65667 -9.23482 -9.01688 -8.89647 -6.96117 -5.79375 -3.08393 0.04968 0.44612 2.30101 2.88500 3.16909 3.29726 3.43538 3.47637 3.48827 3.82795 3.93263 4.09839 4.21762 4.53416 4.57518 4.89895 5.00622 5.10388 5.14812 5.17349 5.25269 5.25600 5.38780 5.55235 5.56010 5.56943 5.61312 5.91434 6.01020 6.13424 6.15275 6.28103 6.32710 6.75210 6.79463 7.28603 7.67918 7.98884 8.39721 9.50818 10.07427 10.42086 11.43607 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.027278 B = 0.002346 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.206254 B =11932.616978 C =12927.764444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.136 4.136 3 C -0.030 4.030 4 C -0.176 4.176 5 C 0.555 3.445 6 O -0.523 6.523 7 N -0.719 5.719 8 C 0.122 3.878 9 C -0.138 4.138 10 C 0.156 3.844 11 N -0.734 5.734 12 C -0.241 4.241 13 H 0.071 0.929 14 C -0.014 4.014 15 N -0.935 5.935 16 Si 0.909 3.091 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.285 1.285 20 C 0.185 3.815 21 F -0.105 7.105 22 C -0.199 4.199 23 C 0.152 3.848 24 F -0.124 7.124 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.149 0.851 29 H 0.399 0.601 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.383 0.617 37 H 0.256 0.744 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.221 -26.953 -0.109 27.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.137 4.137 3 C -0.049 4.049 4 C -0.180 4.180 5 C 0.341 3.659 6 O -0.400 6.400 7 N -0.371 5.371 8 C -0.001 4.001 9 C -0.176 4.176 10 C 0.028 3.972 11 N -0.378 5.378 12 C -0.372 4.372 13 H 0.089 0.911 14 C -0.210 4.210 15 N -0.584 5.584 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C 0.164 3.836 21 F -0.083 7.083 22 C -0.218 4.218 23 C 0.132 3.868 24 F -0.103 7.103 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.167 0.833 29 H 0.235 0.765 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.217 0.783 37 H 0.066 0.934 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.195 -26.811 -0.109 26.838 hybrid contribution -0.366 0.674 0.007 0.767 sum -1.561 -26.137 -0.102 26.184 Atomic orbital electron populations 1.20775 0.88880 1.04062 1.03477 1.19921 0.97942 0.91218 1.04615 1.21013 0.91622 0.98240 0.94041 1.20175 0.94268 0.93325 1.10246 1.17831 0.87248 0.83297 0.77489 1.90868 1.12899 1.87328 1.48941 1.45950 1.10472 1.05840 1.74858 1.21432 0.94891 0.80918 1.02849 1.21958 0.98492 0.94400 1.02787 1.20517 0.92636 0.85738 0.98297 1.42324 1.04788 1.01035 1.89658 1.19201 0.92188 0.83014 1.42804 0.91128 1.24751 0.95292 0.98041 1.02937 1.69646 1.00190 1.30783 1.57760 0.86237 0.77340 0.84522 0.77917 1.21210 1.21660 1.21206 1.17234 0.77800 0.92070 0.96522 1.91643 1.27152 1.97091 1.92413 1.21005 0.93079 0.99059 1.08705 1.17317 0.88876 0.81331 0.99255 1.91541 1.79673 1.45858 1.93192 0.90207 0.90208 0.90778 0.83332 0.76525 0.90987 0.90991 0.91200 0.91206 0.95992 0.95985 0.78305 0.93439 0.82638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.83 36.00 0.35 -0.19 16 2 C -0.14 -0.92 5.88 -104.61 -0.62 -1.53 16 3 C -0.03 -0.22 9.18 -39.21 -0.36 -0.58 16 4 C -0.18 -1.79 5.88 -104.91 -0.62 -2.40 16 5 C 0.56 7.15 7.76 -12.46 -0.10 7.06 16 6 O -0.52 -8.85 15.34 5.29 0.08 -8.77 16 7 N -0.72 -7.94 5.51 -61.33 -0.34 -8.28 16 8 C 0.12 1.60 5.67 -4.04 -0.02 1.57 16 9 C -0.14 -2.01 5.44 -26.73 -0.15 -2.15 16 10 C 0.16 3.04 6.26 -4.04 -0.03 3.02 16 11 N -0.73 -18.40 5.60 -59.91 -0.34 -18.73 16 12 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 15 N -0.94 -28.06 13.06 55.49 0.72 -27.34 16 16 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.18 1.93 7.28 -38.97 -0.28 1.64 16 21 F -0.11 -1.35 15.55 2.25 0.04 -1.31 16 22 C -0.20 -1.60 9.99 -39.50 -0.39 -1.99 16 23 C 0.15 1.16 7.24 -39.30 -0.28 0.87 16 24 F -0.12 -0.96 16.46 2.25 0.04 -0.92 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 27 H 0.07 0.34 7.63 -51.93 -0.40 -0.05 16 28 H 0.15 0.68 6.40 -52.49 -0.34 0.35 16 29 H 0.40 3.21 6.50 -40.82 -0.27 2.94 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.38 9.95 7.67 -40.82 -0.31 9.64 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 335.76 15.07 5.06 5.06 Total: -1.00 -33.63 335.76 -7.16 -40.78 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.66 Total: 4.29 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.74 Total: -2.10 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.05 Total: -54.35 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.08 Total: -8.77 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.07 Total: -2.24 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.63 -7.16 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160717543.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.095 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds