Wall clock time and date at job start Fri Apr 10 2020 20:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86802 * 119.99560 * 2 1 4 4 H 1.48495 * 109.47334 * 270.61771 * 3 2 1 5 5 H 1.48501 * 109.47122 * 30.62235 * 3 2 1 6 6 H 1.48504 * 109.47224 * 150.61762 * 3 2 1 7 7 C 1.40021 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00107 * 352.69982 * 7 2 1 9 9 C 1.41320 * 120.00182 * 172.69044 * 7 2 1 10 10 C 1.40589 * 119.78131 * 151.12962 * 9 7 2 11 11 C 1.38353 * 119.14434 * 180.02562 * 10 9 7 12 12 C 1.38631 * 118.68098 * 359.75398 * 11 10 9 13 13 C 1.39759 * 119.49428 * 0.47106 * 12 11 10 14 14 N 1.38824 * 119.58828 * 179.79320 * 13 12 11 15 15 C 1.47165 * 110.99862 * 46.50971 * 14 13 12 16 16 C 1.52905 * 108.49368 * 52.14246 * 15 14 13 17 17 C 1.50706 * 109.96155 * 50.36267 * 16 15 14 18 18 C 1.38900 * 118.49141 * 163.29197 * 17 16 15 19 19 F 1.35102 * 119.85245 * 359.76320 * 18 17 16 20 20 C 1.38264 * 120.29527 * 179.73630 * 18 17 16 21 21 C 1.38220 * 119.80020 * 0.03590 * 20 18 17 22 22 C 1.38027 * 119.89335 * 0.34153 * 21 20 18 23 23 C 1.37790 * 121.67547 * 343.19960 * 17 16 15 24 24 C 1.46635 * 111.00102 * 169.49227 * 14 13 12 25 25 N 1.31979 * 120.82821 * 359.51612 * 13 12 11 26 26 H 0.96999 * 120.00634 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.42629 * 0.02737 * 10 9 7 28 28 H 1.07994 * 120.65735 * 179.97438 * 11 10 9 29 29 H 1.07998 * 120.25716 * 180.26851 * 12 11 10 30 30 H 1.09001 * 109.63561 * 171.84392 * 15 14 13 31 31 H 1.08994 * 109.63301 * 292.44256 * 15 14 13 32 32 H 1.09002 * 109.38672 * 170.51519 * 16 15 14 33 33 H 1.08996 * 109.38841 * 290.31065 * 16 15 14 34 34 H 1.08004 * 120.09585 * 180.02562 * 20 18 17 35 35 H 1.08003 * 120.05054 * 180.09481 * 21 20 18 36 36 H 1.08000 * 119.77754 * 179.75190 * 22 21 20 37 37 H 1.08999 * 109.26959 * 168.83541 * 24 14 13 38 38 H 1.09002 * 109.24223 * 49.34057 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4757 2.0541 -1.3999 5 1 1.4453 2.6489 0.7132 6 1 3.5454 1.4366 0.6869 7 6 2.0076 -1.2126 -0.0005 8 1 1.4743 -2.1442 0.1179 9 6 3.4122 -1.2174 -0.1563 10 6 4.1750 -2.2490 0.4187 11 6 5.5492 -2.2405 0.2585 12 6 6.1276 -1.2132 -0.4709 13 6 5.3161 -0.2134 -1.0142 14 7 5.8938 0.8185 -1.7413 15 6 6.8697 0.2977 -2.7120 16 6 6.1926 -0.7927 -3.5429 17 6 4.8793 -0.2875 -4.0826 18 6 4.2845 -0.9772 -5.1313 19 9 4.8885 -2.0711 -5.6450 20 6 3.0769 -0.5497 -5.6514 21 6 2.4601 0.5697 -5.1251 22 6 3.0552 1.2595 -4.0882 23 6 4.2645 0.8299 -3.5609 24 6 4.8711 1.6146 -2.4273 25 7 4.0070 -0.2409 -0.8492 26 1 -0.4851 0.8400 0.0004 27 1 3.6944 -3.0379 0.9781 28 1 6.1587 -3.0205 0.6901 29 1 7.1975 -1.1839 -0.6155 30 1 7.2014 1.1039 -3.3663 31 1 7.7242 -0.1230 -2.1822 32 1 6.8421 -1.0707 -4.3731 33 1 6.0127 -1.6661 -2.9161 34 1 2.6171 -1.0887 -6.4666 35 1 1.5160 0.9064 -5.5273 36 1 2.5735 2.1362 -3.6810 37 1 5.3269 2.5227 -2.8218 38 1 4.0892 1.8837 -1.7171 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321328607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:38 Heat of formation + Delta-G solvation = 22.977873 kcal Electronic energy + Delta-G solvation = -24819.905900 eV Core-core repulsion = 21348.401508 eV Total energy + Delta-G solvation = -3471.504392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 298.118 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.64132 -40.56859 -38.40135 -36.53049 -33.53105 -32.52849 -31.44792 -30.94395 -29.49560 -28.62317 -25.93063 -24.58968 -23.62312 -21.93747 -21.72043 -21.07420 -19.25951 -17.65822 -17.18390 -16.74923 -15.94417 -15.55825 -15.48477 -15.13212 -14.79392 -14.48167 -14.41437 -13.77670 -13.46797 -13.41744 -13.14311 -12.76325 -12.71115 -12.34873 -12.22615 -11.96270 -11.58964 -11.34682 -11.31013 -11.17186 -10.91224 -10.68452 -10.49511 -10.40173 -9.99870 -9.33221 -9.03154 -8.44703 -8.31839 -8.28439 -7.97017 -7.23275 -6.87962 -4.66506 1.46602 1.50556 2.42994 2.62231 3.24386 3.35606 3.49263 3.84694 4.11556 4.22250 4.50067 4.59256 4.79390 4.94809 5.10872 5.19539 5.26542 5.43129 5.55220 5.57225 5.61522 5.76402 5.89222 5.94388 5.98196 6.16353 6.19722 6.25859 6.30639 6.36128 6.42005 6.51901 6.54700 6.62351 6.81855 6.98391 7.15259 7.19918 7.36242 7.49047 7.59633 7.94823 8.19383 8.57618 8.64653 9.51495 10.08131 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.013254 B = 0.008636 C = 0.007003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.060502 B = 3241.615914 C = 3997.324498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.090 3.910 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.321 1.321 6 H -0.260 1.260 7 C -0.422 4.422 8 H 0.095 0.905 9 C 0.272 3.728 10 C -0.272 4.272 11 C -0.038 4.038 12 C -0.314 4.314 13 C 0.341 3.659 14 N -0.473 5.473 15 C 0.064 3.936 16 C -0.114 4.114 17 C -0.107 4.107 18 C 0.094 3.906 19 F -0.144 7.144 20 C -0.160 4.160 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.049 4.049 24 C 0.081 3.919 25 N -0.575 5.575 26 H 0.285 0.715 27 H 0.107 0.893 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 3.177 -8.413 12.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.131 4.131 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.252 1.252 6 H -0.186 1.186 7 C -0.454 4.454 8 H 0.113 0.887 9 C 0.147 3.853 10 C -0.294 4.294 11 C -0.062 4.062 12 C -0.339 4.339 13 C 0.106 3.894 14 N -0.189 5.189 15 C -0.063 4.063 16 C -0.152 4.152 17 C -0.108 4.108 18 C 0.075 3.925 19 F -0.123 7.123 20 C -0.179 4.179 21 C -0.111 4.111 22 C -0.134 4.134 23 C -0.051 4.051 24 C -0.046 4.046 25 N -0.297 5.297 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.144 0.856 37 H 0.103 0.897 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.574 4.145 -8.435 12.071 hybrid contribution 0.294 -0.839 -0.193 0.910 sum 7.869 3.307 -8.629 12.137 Atomic orbital electron populations 1.69626 1.08364 1.30539 1.34820 1.26187 0.94739 1.02701 0.89440 0.85399 0.78462 0.77281 0.79032 1.18639 1.25195 1.18559 1.19364 0.89021 0.95552 1.41452 0.88679 1.18382 0.93641 0.86695 0.86612 1.21689 0.93486 1.04577 1.09668 1.20839 0.94692 0.95860 0.94806 1.20695 0.98347 1.00475 1.14370 1.19417 0.89457 0.87941 0.92612 1.59599 1.15250 1.20600 1.23425 1.22237 0.94793 0.96580 0.92672 1.21054 0.93330 1.00446 1.00414 1.19433 0.98337 0.96589 0.96485 1.17552 0.93307 0.85726 0.95934 1.91438 1.83119 1.51693 1.86029 1.20944 0.94998 0.99297 1.02674 1.20841 0.99320 0.94642 0.96332 1.21086 0.94858 1.00918 0.96493 1.19960 0.94721 0.94583 0.95821 1.21442 0.95018 0.94538 0.93610 1.67262 1.08598 1.29911 1.23917 0.90440 0.87507 0.87817 0.87783 0.90090 0.89251 0.90320 0.89095 0.85292 0.85365 0.85610 0.89712 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 13.92 55.55 0.77 -20.85 16 2 C 0.09 2.39 5.52 -17.35 -0.10 2.30 16 3 Si 0.97 22.71 23.93 -169.99 -4.07 18.64 16 4 H -0.26 -5.63 5.01 56.52 0.28 -5.35 16 5 H -0.32 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.26 -6.54 6.64 56.52 0.38 -6.17 16 7 C -0.42 -11.49 9.68 -37.74 -0.37 -11.85 16 8 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.27 6.98 5.89 -85.00 -0.50 6.48 16 10 C -0.27 -6.32 9.83 -38.65 -0.38 -6.70 16 11 C -0.04 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.31 -6.38 8.11 -38.87 -0.32 -6.70 16 13 C 0.34 7.37 4.97 -155.32 -0.77 6.60 16 14 N -0.47 -8.79 5.08 -174.64 -0.89 -9.68 16 15 C 0.06 0.95 5.56 -3.73 -0.02 0.93 16 16 C -0.11 -1.85 4.90 -27.93 -0.14 -1.98 16 17 C -0.11 -1.92 5.54 -104.54 -0.58 -2.50 16 18 C 0.09 1.64 7.23 -39.33 -0.28 1.36 16 19 F -0.14 -2.47 16.57 2.25 0.04 -2.43 16 20 C -0.16 -2.53 10.03 -39.58 -0.40 -2.93 16 21 C -0.09 -1.45 10.04 -39.67 -0.40 -1.84 16 22 C -0.11 -1.96 9.52 -39.47 -0.38 -2.34 16 23 C -0.05 -0.89 4.92 -104.63 -0.51 -1.41 16 24 C 0.08 1.46 5.19 -5.16 -0.03 1.43 16 25 N -0.57 -13.92 3.99 -10.33 -0.04 -13.96 16 26 H 0.29 6.96 8.29 -40.82 -0.34 6.62 16 27 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 28 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.10 1.84 6.78 -52.49 -0.36 1.49 16 30 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 31 H 0.09 1.20 6.85 -51.93 -0.36 0.84 16 32 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 33 H 0.09 1.68 6.49 -51.93 -0.34 1.34 16 34 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 36 H 0.13 2.00 7.64 -52.49 -0.40 1.60 16 37 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.12 2.37 3.08 -51.93 -0.16 2.21 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -28.89 302.88 -9.44 -38.33 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.26 Total: 5.73 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -5.56 Total: -20.34 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.16 Total: -44.50 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.07 Total: 18.64 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.89 -9.44 -38.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321328607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.312 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds