Wall clock time and date at job start Fri Apr 10 2020 20:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47339 * 2 1 4 4 N 1.46499 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99771 * 275.49659 * 4 3 2 6 6 H 1.07998 * 120.00178 * 146.66699 * 5 4 3 7 7 C 1.38949 * 119.99910 * 326.67192 * 5 4 3 8 8 N 1.31409 * 120.00297 * 336.10767 * 7 5 4 9 9 Si 1.86800 * 120.00078 * 156.10111 * 7 5 4 10 10 H 1.48506 * 109.46746 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46950 * 120.00129 * 9 7 5 12 12 H 1.48503 * 109.47558 * 240.00169 * 9 7 5 13 13 C 1.34770 * 120.00256 * 95.49448 * 4 3 2 14 14 O 1.21300 * 120.00114 * 180.02562 * 13 4 3 15 15 C 1.50696 * 120.00177 * 0.02562 * 13 4 3 16 16 F 1.39906 * 109.47142 * 84.99919 * 15 13 4 17 17 F 1.39897 * 109.47055 * 325.00034 * 15 13 4 18 18 C 1.50699 * 109.47583 * 204.99891 * 15 13 4 19 19 N 1.31890 * 119.61483 * 359.97438 * 18 15 13 20 20 C 1.31854 * 121.72943 * 179.97438 * 19 18 15 21 21 C 1.38233 * 120.75804 * 0.02562 * 20 19 18 22 22 C 1.38624 * 119.16082 * 359.97438 * 21 20 19 23 23 C 1.38180 * 119.62272 * 180.02562 * 18 15 13 24 24 C 1.50700 * 120.41585 * 0.02562 * 23 18 15 25 25 H 1.09003 * 109.46868 * 300.00203 * 1 2 3 26 26 H 1.08999 * 109.47445 * 60.00253 * 1 2 3 27 27 H 1.08995 * 109.47674 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47119 * 239.99364 * 2 1 3 29 29 H 1.08999 * 109.46932 * 119.99625 * 2 1 3 30 30 H 1.08992 * 109.47143 * 59.99583 * 3 2 1 31 31 H 1.08999 * 109.46803 * 299.99705 * 3 2 1 32 32 H 0.97001 * 120.00450 * 179.97438 * 8 7 5 33 33 H 1.07997 * 119.62016 * 179.97438 * 20 19 18 34 34 H 1.08001 * 120.41496 * 180.02562 * 21 20 19 35 35 H 1.08010 * 120.78666 * 180.02562 * 22 21 20 36 36 H 1.08998 * 109.47100 * 269.98308 * 24 23 18 37 37 H 1.09000 * 109.47246 * 29.97870 * 24 23 18 38 38 H 1.08997 * 109.47392 * 149.97880 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1910 1.3285 1.1810 6 1 5.1377 0.8096 1.2079 7 6 3.6680 1.8807 2.3439 8 7 2.8129 2.8758 2.2720 9 14 4.1805 1.2083 4.0096 10 1 5.1471 0.0971 3.8187 11 1 4.8191 2.2882 4.8041 12 1 2.9834 0.7054 4.7302 13 6 4.1784 1.5544 -1.1626 14 8 5.3914 1.5539 -1.1632 15 6 3.4245 1.6801 -2.4614 16 9 3.0922 3.0215 -2.6797 17 9 2.2554 0.9145 -2.3979 18 6 4.2878 1.1858 -3.5934 19 7 5.5021 0.7381 -3.3395 20 6 6.2924 0.2955 -4.2976 21 6 5.8707 0.2863 -5.6140 22 6 4.6003 0.7494 -5.9196 23 6 3.7985 1.2080 -4.8854 24 6 2.4104 1.7229 -5.1669 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 2.4475 3.2611 3.0838 33 1 7.2808 -0.0632 -4.0512 34 1 6.5225 -0.0778 -6.3944 35 1 4.2439 0.7537 -6.9392 36 1 1.6986 0.8995 -5.1084 37 1 2.1484 2.4825 -4.4304 38 1 2.3802 2.1591 -6.1653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278171663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:10 Heat of formation + Delta-G solvation = -66.377582 kcal Electronic energy + Delta-G solvation = -25708.369832 eV Core-core repulsion = 21802.221473 eV Total energy + Delta-G solvation = -3906.148360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.83288 -46.68186 -40.13396 -38.22359 -35.35523 -33.56359 -32.65791 -32.28175 -31.24202 -28.21568 -26.59767 -25.81208 -24.52351 -22.87899 -21.81815 -20.90466 -19.68624 -17.73979 -17.25118 -16.91743 -16.66275 -15.90217 -15.48318 -15.21957 -14.58518 -14.34087 -14.15678 -13.90760 -13.65331 -13.37256 -13.17863 -13.01531 -12.96949 -12.76345 -12.60775 -12.47621 -12.14005 -12.00392 -11.58291 -11.44647 -11.20487 -11.05372 -10.81147 -10.52314 -10.26442 -10.22597 -9.74385 -9.71804 -9.35379 -8.98377 -8.90394 -8.20876 -7.48592 -6.34598 -3.97002 1.00515 1.36352 3.12780 3.25985 3.32544 3.57405 3.62035 3.85744 4.03934 4.39870 4.60351 4.72458 4.79779 4.95914 5.00840 5.09883 5.32681 5.44850 5.54256 5.60140 5.65042 5.66668 5.78208 5.85158 6.03958 6.10393 6.15111 6.20963 6.30655 6.53425 6.62942 6.68391 6.75784 7.03663 7.37751 7.59709 8.11765 8.18532 8.44552 9.09123 9.31931 9.87356 10.65868 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.005781 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.024921 B = 4842.233870 C = 5571.655864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.085 3.915 4 N -0.418 5.418 5 C -0.307 4.307 6 H 0.097 0.903 7 C 0.039 3.961 8 N -0.859 5.859 9 Si 0.919 3.081 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.422 3.578 14 O -0.511 6.511 15 C 0.336 3.664 16 F -0.180 7.180 17 F -0.180 7.180 18 C 0.072 3.928 19 N -0.394 5.394 20 C 0.085 3.915 21 C -0.155 4.155 22 C -0.090 4.090 23 C -0.102 4.102 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.056 0.944 32 H 0.269 0.731 33 H 0.160 0.840 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -4.474 -13.185 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.039 4.039 4 N -0.136 5.136 5 C -0.435 4.435 6 H 0.115 0.885 7 C -0.166 4.166 8 N -0.496 5.496 9 Si 0.745 3.255 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.204 1.204 13 C 0.204 3.796 14 O -0.389 6.389 15 C 0.295 3.705 16 F -0.161 7.161 17 F -0.161 7.161 18 C -0.068 4.068 19 N -0.101 5.101 20 C -0.074 4.074 21 C -0.175 4.175 22 C -0.116 4.116 23 C -0.104 4.104 24 C -0.184 4.184 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.975 -4.330 -12.146 13.045 hybrid contribution -0.389 -0.141 -0.251 0.484 sum -2.364 -4.471 -12.396 13.388 Atomic orbital electron populations 1.21644 0.96498 1.00495 1.01364 1.21903 0.94744 0.98724 1.01852 1.22041 0.81346 0.95886 1.04634 1.43555 1.05118 1.60545 1.04418 1.19538 1.06832 1.33975 0.83126 0.88487 1.25362 0.97111 0.93999 1.00111 1.69912 1.30768 1.19426 1.29494 0.85995 0.78663 0.79314 0.81528 1.19009 1.20677 1.20440 1.20000 0.88597 0.86858 0.84148 1.90638 1.11895 1.52263 1.84121 1.19908 0.80823 0.73776 0.95973 1.92990 1.92964 1.34526 1.95641 1.92994 1.50661 1.75406 1.97040 1.21030 0.93270 1.00665 0.91803 1.67869 1.02071 1.04540 1.35635 1.22978 0.99707 0.96302 0.88364 1.22291 0.96756 1.00040 0.98451 1.21388 0.93780 0.97375 0.99018 1.20733 0.98046 0.98374 0.93293 1.21006 0.92008 1.02079 1.03273 0.92934 0.93196 0.93576 0.92557 0.91925 0.86695 0.92537 0.92049 0.82321 0.84591 0.84524 0.90199 0.90035 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.13 -2.68 5.72 -26.73 -0.15 -2.84 16 3 C 0.08 1.97 4.51 -4.04 -0.02 1.95 16 4 N -0.42 -11.10 2.56 -114.82 -0.29 -11.40 16 5 C -0.31 -8.63 8.95 -14.93 -0.13 -8.76 16 6 H 0.10 2.84 7.70 -52.49 -0.40 2.43 16 7 C 0.04 1.04 4.98 -17.47 -0.09 0.96 16 8 N -0.86 -23.22 11.26 55.50 0.63 -22.60 16 9 Si 0.92 20.54 29.61 -169.99 -5.03 15.50 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.42 11.08 7.00 -10.99 -0.08 11.00 16 14 O -0.51 -14.67 14.23 5.54 0.08 -14.59 16 15 C 0.34 7.33 1.02 -29.04 -0.03 7.30 16 16 F -0.18 -3.88 14.85 2.25 0.03 -3.85 16 17 F -0.18 -3.58 10.99 2.25 0.02 -3.56 16 18 C 0.07 1.43 6.13 -82.59 -0.51 0.92 16 19 N -0.39 -8.10 7.44 -9.47 -0.07 -8.17 16 20 C 0.08 1.30 11.18 -17.54 -0.20 1.11 16 21 C -0.16 -1.85 10.11 -39.44 -0.40 -2.25 16 22 C -0.09 -1.09 9.86 -39.28 -0.39 -1.48 16 23 C -0.10 -1.57 5.85 -104.49 -0.61 -2.18 16 24 C -0.13 -1.61 9.00 36.01 0.32 -1.29 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.13 6.53 -51.93 -0.34 0.79 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.12 2.89 5.31 -51.93 -0.28 2.62 16 31 H 0.06 1.26 5.49 -51.93 -0.29 0.97 16 32 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.18 5.53 -51.93 -0.29 0.89 16 38 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -32.31 318.35 -6.27 -38.59 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.53 Total: 2.78 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.91 Total: 2.50 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.26 Total: -42.16 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.08 Total: -14.59 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.06 Total: -7.41 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.31 -6.27 -38.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278171663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.792 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds