Wall clock time and date at job start Fri Apr 10 2020 20:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47626 * 2 1 4 4 O 1.42909 * 109.47188 * 239.99917 * 2 1 3 5 5 C 1.50702 * 109.47297 * 120.00255 * 2 1 3 6 6 C 1.38359 * 119.93338 * 330.25048 * 5 2 1 7 7 C 1.38303 * 120.25285 * 180.30156 * 6 5 2 8 8 C 1.38026 * 120.13031 * 359.44357 * 7 6 5 9 9 C 1.39382 * 119.86863 * 0.28044 * 8 7 6 10 10 C 1.48281 * 120.12472 * 180.02562 * 9 8 7 11 11 C 1.39291 * 120.16129 * 129.99944 * 10 9 8 12 12 C 1.38013 * 119.94830 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.26502 * 0.02562 * 12 11 10 14 14 C 1.38100 * 120.32830 * 359.97438 * 13 12 11 15 15 C 1.38758 * 120.05090 * 359.72080 * 14 13 12 16 16 O 1.35662 * 120.13729 * 180.29891 * 15 14 13 17 17 C 1.34812 * 117.00203 * 354.40654 * 16 15 14 18 18 H 1.07999 * 120.00251 * 5.05713 * 17 16 15 19 19 C 1.38652 * 119.99963 * 185.06616 * 17 16 15 20 20 N 1.31550 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99641 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47200 * 89.99709 * 21 19 17 23 23 H 1.48505 * 109.46652 * 209.99585 * 21 19 17 24 24 H 1.48495 * 109.46909 * 329.99235 * 21 19 17 25 25 C 1.37980 * 119.93953 * 149.99868 * 5 2 1 26 26 H 1.09005 * 109.46808 * 300.00381 * 1 2 3 27 27 H 1.08998 * 109.47010 * 59.99601 * 1 2 3 28 28 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47404 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46726 * 300.00251 * 3 2 1 31 31 H 1.09001 * 109.46899 * 59.99784 * 3 2 1 32 32 H 0.96698 * 113.99848 * 300.00569 * 4 2 1 33 33 H 1.08001 * 119.87522 * 0.03990 * 6 5 2 34 34 H 1.08002 * 119.93660 * 179.72361 * 7 6 5 35 35 H 1.07999 * 120.07132 * 180.25501 * 8 7 6 36 36 H 1.08007 * 120.02581 * 0.02562 * 11 10 9 37 37 H 1.07990 * 119.86318 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.83041 * 179.97438 * 13 12 11 39 39 H 1.08007 * 119.97480 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00525 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.06251 * 359.95258 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7105 1.2304 6 6 1.2810 -0.6942 2.3922 7 6 1.7387 -1.3388 3.5270 8 6 2.9434 -2.0121 3.5031 9 6 3.7018 -2.0366 2.3340 10 6 4.9965 -2.7587 2.3019 11 6 5.2671 -3.6652 1.2795 12 6 6.4738 -4.3344 1.2536 13 6 7.4180 -4.1092 2.2408 14 6 7.1614 -3.2129 3.2596 15 6 5.9552 -2.5280 3.2952 16 8 5.7038 -1.6427 4.2919 17 6 6.6166 -1.5584 5.2804 18 1 7.5374 -2.1187 5.2143 19 6 6.3730 -0.7524 6.3820 20 7 5.2515 -0.0696 6.4624 21 14 7.6376 -0.6363 7.7521 22 1 8.5820 0.4721 7.4613 23 1 6.9482 -0.3740 9.0410 24 1 8.3876 -1.9147 7.8430 25 6 3.2381 -1.3803 1.1948 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7209 -1.5952 -1.2330 33 1 0.3355 -0.1727 2.4141 34 1 1.1502 -1.3191 4.4324 35 1 3.2979 -2.5185 4.3887 36 1 4.5335 -3.8436 0.5071 37 1 6.6820 -5.0372 0.4605 38 1 8.3598 -4.6370 2.2139 39 1 7.9023 -3.0412 4.0266 40 1 5.0812 0.4945 7.2330 41 1 3.8214 -1.3963 0.2860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240407409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:09 Heat of formation + Delta-G solvation = -35.157875 kcal Electronic energy + Delta-G solvation = -23718.424610 eV Core-core repulsion = 20335.566818 eV Total energy + Delta-G solvation = -3382.857793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.74058 -38.86697 -36.92907 -36.25866 -32.92038 -32.31304 -31.50892 -29.69367 -29.12777 -28.03058 -27.18934 -25.38788 -23.04038 -22.60910 -21.26547 -20.88640 -19.54135 -17.98358 -17.50956 -16.54917 -15.98246 -15.14675 -14.81325 -14.65831 -14.56267 -14.37951 -14.07227 -13.72711 -13.45850 -13.25208 -12.89508 -12.69252 -12.46133 -12.31671 -12.14877 -11.79476 -11.74062 -11.67399 -11.37230 -11.23868 -11.17278 -10.90367 -10.75740 -10.58454 -10.47129 -10.33095 -9.87686 -9.35185 -8.89009 -8.62996 -8.23955 -7.79405 -7.12513 -6.47897 -4.06325 1.61337 1.94553 2.31823 2.40923 3.10624 3.11471 3.15876 3.93223 4.23834 4.29738 4.58464 4.80436 4.96045 5.06764 5.14865 5.20554 5.35410 5.51563 5.54235 5.63983 5.65697 5.76384 5.80461 5.86027 5.91566 6.00454 6.04962 6.10868 6.15667 6.28863 6.31194 6.51624 6.58524 6.66697 6.74877 6.97742 7.01073 7.09309 7.18023 7.24580 7.34196 7.43918 7.59336 7.72403 7.78479 7.95861 8.97000 9.66286 10.68715 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.004984 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.238098 B = 5616.922195 C = 6983.298779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.173 3.827 3 C -0.134 4.134 4 O -0.557 6.557 5 C -0.130 4.130 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.074 4.074 9 C -0.011 4.011 10 C -0.135 4.135 11 C -0.060 4.060 12 C -0.215 4.215 13 C -0.070 4.070 14 C -0.234 4.234 15 C 0.164 3.836 16 O -0.164 6.164 17 C -0.395 4.395 18 H 0.091 0.909 19 C 0.043 3.957 20 N -0.855 5.855 21 Si 0.938 3.062 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.268 1.268 25 C -0.100 4.100 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.375 0.625 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 -2.348 -9.112 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.133 3.867 3 C -0.191 4.191 4 O -0.363 6.363 5 C -0.130 4.130 6 C -0.143 4.143 7 C -0.136 4.136 8 C -0.092 4.092 9 C -0.011 4.011 10 C -0.136 4.136 11 C -0.078 4.078 12 C -0.234 4.234 13 C -0.089 4.089 14 C -0.253 4.253 15 C 0.109 3.891 16 O -0.066 6.066 17 C -0.471 4.471 18 H 0.109 0.891 19 C -0.162 4.162 20 N -0.489 5.489 21 Si 0.763 3.237 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.118 4.118 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.222 0.778 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.805 -1.419 -8.992 11.366 hybrid contribution 0.594 -0.467 1.014 1.265 sum -6.211 -1.886 -7.978 10.285 Atomic orbital electron populations 1.22523 0.95650 1.02493 1.02556 1.19914 0.92038 0.92352 0.82424 1.21738 1.02483 0.92921 1.01990 1.86527 1.77439 1.28894 1.43436 1.20193 0.96143 1.00890 0.95805 1.20920 0.99594 1.00886 0.92883 1.20983 0.96754 0.98236 0.97626 1.21291 0.93123 0.97505 0.97325 1.18621 0.92788 0.96451 0.93272 1.17882 0.93649 1.03805 0.98285 1.20708 0.96343 0.94868 0.95887 1.20523 0.95694 1.05572 1.01624 1.20811 0.97918 0.96411 0.93734 1.21119 0.98853 1.02967 1.02401 1.19328 0.92096 0.88535 0.89118 1.83989 1.45460 1.48907 1.28276 1.21339 0.99165 1.29384 0.97250 0.89135 1.25251 0.97514 0.95720 0.97739 1.70044 1.23114 1.26025 1.29724 0.85752 0.79405 0.79071 0.79467 1.19899 1.20252 1.19207 1.20945 0.95317 0.97495 0.98034 0.91220 0.91959 0.92199 0.91612 0.92096 0.91055 0.77778 0.86708 0.86520 0.85796 0.86942 0.87492 0.87471 0.85412 0.92042 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.11 37.15 0.30 -1.53 16 2 C 0.17 2.26 1.23 -91.77 -0.11 2.15 16 3 C -0.13 -1.75 8.83 37.16 0.33 -1.42 16 4 O -0.56 -7.23 11.96 -35.23 -0.42 -7.65 16 5 C -0.13 -2.05 4.81 -104.67 -0.50 -2.55 16 6 C -0.12 -1.97 9.14 -39.51 -0.36 -2.33 16 7 C -0.12 -2.11 10.03 -39.64 -0.40 -2.51 16 8 C -0.07 -1.55 8.79 -39.23 -0.34 -1.89 16 9 C -0.01 -0.23 5.27 -104.90 -0.55 -0.78 16 10 C -0.13 -2.88 5.49 -104.73 -0.57 -3.46 16 11 C -0.06 -1.10 9.51 -39.27 -0.37 -1.47 16 12 C -0.22 -3.74 10.03 -39.59 -0.40 -4.14 16 13 C -0.07 -1.29 10.03 -39.56 -0.40 -1.69 16 14 C -0.23 -5.08 9.16 -39.44 -0.36 -5.44 16 15 C 0.16 3.94 6.56 -38.74 -0.25 3.68 16 16 O -0.16 -4.52 8.13 0.37 0.00 -4.51 16 17 C -0.40 -10.79 9.49 30.89 0.29 -10.49 16 18 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 19 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 20 N -0.85 -24.34 13.67 55.48 0.76 -23.59 16 21 Si 0.94 20.21 29.55 -169.99 -5.02 15.19 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 C -0.10 -1.79 8.81 -39.24 -0.35 -2.14 16 26 H 0.07 0.69 6.50 -51.93 -0.34 0.35 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.38 3.70 9.04 45.56 0.41 4.11 16 33 H 0.12 1.49 6.14 -52.49 -0.32 1.17 16 34 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 35 H 0.12 2.81 7.71 -52.49 -0.40 2.41 16 36 H 0.11 1.76 8.04 -52.48 -0.42 1.34 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.13 2.75 5.64 -52.48 -0.30 2.46 16 40 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.12 2.11 7.46 -52.49 -0.39 1.72 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -30.41 344.35 -8.20 -38.61 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -4.55 Total: 11.73 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: -4.15 Total: -34.96 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.76 Total: -23.59 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -0.42 Total: -12.17 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.41 -8.20 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.450 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds