Wall clock time and date at job start Fri Apr 10 2020 20:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47626 * 2 1 4 4 O 1.42909 * 109.47188 * 239.99917 * 2 1 3 5 5 C 1.50702 * 109.47297 * 120.00255 * 2 1 3 6 6 C 1.38359 * 119.93338 * 330.25048 * 5 2 1 7 7 C 1.38303 * 120.25285 * 180.30156 * 6 5 2 8 8 C 1.38026 * 120.13031 * 359.44357 * 7 6 5 9 9 C 1.39382 * 119.86863 * 0.28044 * 8 7 6 10 10 C 1.48281 * 120.12472 * 180.02562 * 9 8 7 11 11 C 1.39291 * 120.16129 * 129.99944 * 10 9 8 12 12 C 1.38013 * 119.94830 * 179.97438 * 11 10 9 13 13 C 1.38447 * 120.26502 * 0.02562 * 12 11 10 14 14 C 1.38100 * 120.32830 * 359.97438 * 13 12 11 15 15 C 1.38758 * 120.05090 * 359.72080 * 14 13 12 16 16 O 1.35662 * 120.13729 * 180.29891 * 15 14 13 17 17 C 1.34812 * 117.00203 * 354.40654 * 16 15 14 18 18 H 1.07999 * 120.00251 * 5.05713 * 17 16 15 19 19 C 1.38652 * 119.99963 * 185.06616 * 17 16 15 20 20 N 1.31550 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99641 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47200 * 89.99709 * 21 19 17 23 23 H 1.48505 * 109.46652 * 209.99585 * 21 19 17 24 24 H 1.48495 * 109.46909 * 329.99235 * 21 19 17 25 25 C 1.37980 * 119.93953 * 149.99868 * 5 2 1 26 26 H 1.09005 * 109.46808 * 300.00381 * 1 2 3 27 27 H 1.08998 * 109.47010 * 59.99601 * 1 2 3 28 28 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47404 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46726 * 300.00251 * 3 2 1 31 31 H 1.09001 * 109.46899 * 59.99784 * 3 2 1 32 32 H 0.96698 * 113.99848 * 300.00569 * 4 2 1 33 33 H 1.08001 * 119.87522 * 0.03990 * 6 5 2 34 34 H 1.08002 * 119.93660 * 179.72361 * 7 6 5 35 35 H 1.07999 * 120.07132 * 180.25501 * 8 7 6 36 36 H 1.08007 * 120.02581 * 0.02562 * 11 10 9 37 37 H 1.07990 * 119.86318 * 179.97438 * 12 11 10 38 38 H 1.08001 * 119.83041 * 179.97438 * 13 12 11 39 39 H 1.08007 * 119.97480 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00525 * 180.02562 * 20 19 17 41 41 H 1.07999 * 120.06251 * 359.95258 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7105 1.2304 6 6 1.2810 -0.6942 2.3922 7 6 1.7387 -1.3388 3.5270 8 6 2.9434 -2.0121 3.5031 9 6 3.7018 -2.0366 2.3340 10 6 4.9965 -2.7587 2.3019 11 6 5.2671 -3.6652 1.2795 12 6 6.4738 -4.3344 1.2536 13 6 7.4180 -4.1092 2.2408 14 6 7.1614 -3.2129 3.2596 15 6 5.9552 -2.5280 3.2952 16 8 5.7038 -1.6427 4.2919 17 6 6.6166 -1.5584 5.2804 18 1 7.5374 -2.1187 5.2143 19 6 6.3730 -0.7524 6.3820 20 7 5.2515 -0.0696 6.4624 21 14 7.6376 -0.6363 7.7521 22 1 8.5820 0.4721 7.4613 23 1 6.9482 -0.3740 9.0410 24 1 8.3876 -1.9147 7.8430 25 6 3.2381 -1.3803 1.1948 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7209 -1.5952 -1.2330 33 1 0.3355 -0.1727 2.4141 34 1 1.1502 -1.3191 4.4324 35 1 3.2979 -2.5185 4.3887 36 1 4.5335 -3.8436 0.5071 37 1 6.6820 -5.0372 0.4605 38 1 8.3598 -4.6370 2.2139 39 1 7.9023 -3.0412 4.0266 40 1 5.0812 0.4945 7.2330 41 1 3.8214 -1.3963 0.2860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:08 Heat of formation + Delta-G solvation = -53.167657 kcal Electronic energy + Delta-G solvation = -23719.205573 eV Core-core repulsion = 20335.566818 eV Total energy + Delta-G solvation = -3383.638756 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.19761 -40.34262 -38.32235 -37.79082 -34.34478 -34.04592 -32.87634 -31.02525 -30.72560 -29.48309 -28.16984 -27.33217 -24.44317 -24.03696 -22.85202 -22.31440 -20.81614 -19.80552 -18.97843 -18.06267 -17.26357 -16.60628 -16.41701 -16.13207 -15.98639 -15.66546 -15.52526 -15.31076 -15.01462 -14.73173 -14.42418 -14.20083 -13.74510 -13.55574 -13.32072 -13.18197 -13.01680 -12.94297 -12.77906 -12.64340 -12.46347 -12.41187 -12.35813 -12.15043 -11.93977 -11.57453 -11.22337 -10.90116 -10.80799 -10.13484 -9.65476 -9.34401 -8.79523 -8.45405 -6.12307 0.11850 0.51313 0.71409 0.89047 1.33173 1.41977 1.49538 2.16030 2.77016 2.91409 3.19588 3.33873 3.49318 3.65445 3.83794 4.04733 4.13355 4.19908 4.21019 4.27835 4.30503 4.49781 4.60075 4.62242 4.69371 4.76602 4.86625 4.93387 4.97099 5.05309 5.10989 5.12239 5.18800 5.22410 5.27192 5.33676 5.56858 5.60090 5.63517 5.70130 5.74747 5.86081 6.02534 6.15841 6.23162 6.86349 6.98358 7.79681 8.75842 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.014201 B = 0.004984 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.238098 B = 5616.922195 C = 6983.298779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.176 3.824 3 C -0.138 4.138 4 O -0.567 6.567 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.126 4.126 8 C -0.104 4.104 9 C -0.035 4.035 10 C -0.146 4.146 11 C -0.061 4.061 12 C -0.192 4.192 13 C -0.070 4.070 14 C -0.250 4.250 15 C 0.122 3.878 16 O -0.210 6.210 17 C -0.418 4.418 18 H 0.097 0.903 19 C -0.016 4.016 20 N -0.909 5.909 21 Si 1.013 2.987 22 H -0.265 1.265 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.103 4.103 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.389 0.611 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.229 -3.135 -11.604 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.135 3.865 3 C -0.195 4.195 4 O -0.375 6.375 5 C -0.121 4.121 6 C -0.133 4.133 7 C -0.144 4.144 8 C -0.123 4.123 9 C -0.035 4.035 10 C -0.147 4.147 11 C -0.079 4.079 12 C -0.210 4.210 13 C -0.088 4.088 14 C -0.270 4.270 15 C 0.071 3.929 16 O -0.115 6.115 17 C -0.494 4.494 18 H 0.115 0.885 19 C -0.214 4.214 20 N -0.546 5.546 21 Si 0.832 3.168 22 H -0.191 1.191 23 H -0.196 1.196 24 H -0.179 1.179 25 C -0.121 4.121 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.238 0.762 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.162 0.838 37 H 0.171 0.829 38 H 0.163 0.837 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.251 -2.257 -11.535 13.811 hybrid contribution 0.695 -0.392 1.485 1.686 sum -6.557 -2.650 -10.050 12.289 Atomic orbital electron populations 1.22480 0.92985 1.03514 1.03725 1.19970 0.93890 0.91686 0.80950 1.21793 1.01065 0.93400 1.03278 1.86505 1.77872 1.30115 1.42962 1.20623 0.94955 0.99324 0.97158 1.21286 1.00685 0.99588 0.91701 1.21206 0.95910 0.98019 0.99258 1.21141 0.95079 0.99590 0.96478 1.18755 0.92803 0.97850 0.94094 1.18339 0.93672 1.04347 0.98334 1.21150 0.97658 0.93594 0.95525 1.21112 0.94229 1.04235 1.01425 1.21237 0.99765 0.95242 0.92524 1.21275 0.98051 1.04007 1.03622 1.19938 0.93971 0.89507 0.89509 1.83973 1.46393 1.51499 1.29651 1.21792 0.99667 1.29874 0.98054 0.88539 1.26444 0.99756 0.95124 1.00099 1.70193 1.25642 1.27882 1.30895 0.84670 0.76649 0.79572 0.75861 1.19050 1.19585 1.17890 1.21019 0.96279 0.97595 0.97220 0.90383 0.90510 0.91290 0.93916 0.90160 0.90514 0.76189 0.83020 0.85328 0.89673 0.83773 0.82914 0.83697 0.86346 0.92025 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 8.11 71.98 0.58 -2.30 16 2 C 0.18 4.12 1.23 -11.54 -0.01 4.11 16 3 C -0.14 -3.33 8.83 71.98 0.64 -2.70 16 4 O -0.57 -13.14 11.96 -148.98 -1.78 -14.92 16 5 C -0.12 -3.62 4.81 -19.90 -0.10 -3.72 16 6 C -0.11 -3.47 9.14 22.31 0.20 -3.26 16 7 C -0.13 -4.65 10.03 22.23 0.22 -4.43 16 8 C -0.10 -4.68 8.79 22.49 0.20 -4.48 16 9 C -0.03 -1.49 5.27 -20.05 -0.11 -1.60 16 10 C -0.15 -6.42 5.49 -19.93 -0.11 -6.53 16 11 C -0.06 -2.14 9.51 22.47 0.21 -1.93 16 12 C -0.19 -5.99 10.03 22.27 0.22 -5.77 16 13 C -0.07 -2.42 10.03 22.29 0.22 -2.19 16 14 C -0.25 -11.13 9.16 22.36 0.20 -10.93 16 15 C 0.12 6.20 6.56 22.81 0.15 6.35 16 16 O -0.21 -12.52 8.13 -21.58 -0.18 -12.70 16 17 C -0.42 -24.39 9.49 67.92 0.64 -23.74 16 18 H 0.10 5.23 5.21 -2.91 -0.02 5.22 16 19 C -0.02 -0.89 5.49 84.83 0.47 -0.42 16 20 N -0.91 -55.25 13.67 21.61 0.30 -54.95 16 21 Si 1.01 43.16 29.55 68.60 2.03 45.19 16 22 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 25 C -0.10 -3.68 8.81 22.49 0.20 -3.49 16 26 H 0.08 1.21 6.50 -2.38 -0.02 1.19 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.39 6.49 9.04 -74.06 -0.67 5.82 16 33 H 0.15 3.44 6.14 -2.91 -0.02 3.42 16 34 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 35 H 0.08 4.36 7.71 -2.91 -0.02 4.34 16 36 H 0.14 4.06 8.04 -2.91 -0.02 4.04 16 37 H 0.15 3.48 8.06 -2.92 -0.02 3.45 16 38 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 40 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.13 4.32 7.46 -2.91 -0.02 4.29 16 Total: -1.00 -72.71 344.35 4.59 -68.12 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.38 Total: 36.30 kcal Atomic # 6 Polarization: -70.87 SS G_CDS: 3.84 Total: -67.03 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.30 Total: -54.95 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.96 Total: -27.62 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.71 4.59 -68.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.949 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds