Wall clock time and date at job start Fri Apr 10 2020 20:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46953 * 2 1 4 4 C 1.52999 * 109.47530 * 239.99836 * 2 1 3 5 5 N 1.46493 * 109.47443 * 185.00091 * 4 2 1 6 6 C 1.36938 * 120.00447 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99492 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99893 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00017 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47400 * 90.00011 * 10 8 6 12 12 H 1.48504 * 109.47032 * 209.99939 * 10 8 6 13 13 H 1.48492 * 109.47057 * 329.99877 * 10 8 6 14 14 N 1.46497 * 109.46979 * 119.99592 * 2 1 3 15 15 C 1.46502 * 119.99972 * 60.00567 * 14 2 1 16 16 C 1.34779 * 120.00251 * 239.99995 * 14 2 1 17 17 O 1.21565 * 119.99850 * 5.22755 * 16 14 2 18 18 C 1.47695 * 119.99765 * 185.22450 * 16 14 2 19 19 C 1.39651 * 120.15893 * 22.25707 * 18 16 14 20 20 C 1.38070 * 119.85022 * 179.74139 * 19 18 16 21 21 F 1.35105 * 119.91360 * 180.28086 * 20 19 18 22 22 C 1.38650 * 120.16968 * 0.53981 * 20 19 18 23 23 C 1.38185 * 120.31240 * 359.71460 * 22 20 19 24 24 C 1.38313 * 120.14825 * 0.02562 * 23 22 20 25 25 F 1.35095 * 120.08835 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47307 * 300.00293 * 1 2 3 28 28 H 1.09006 * 109.46938 * 60.00288 * 1 2 3 29 29 H 1.08999 * 109.47127 * 305.00033 * 4 2 1 30 30 H 1.09006 * 109.46773 * 64.99956 * 4 2 1 31 31 H 0.97000 * 120.00290 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99508 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47385 * 84.04344 * 15 14 2 34 34 H 1.09006 * 109.46639 * 324.04291 * 15 14 2 35 35 H 1.09000 * 109.47532 * 204.04759 * 15 14 2 36 36 H 1.08000 * 120.07616 * 359.97438 * 19 18 16 37 37 H 1.08001 * 119.84783 * 179.69813 * 22 20 19 38 38 H 1.08004 * 119.92820 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.1840 -1.4379 -2.2071 7 1 3.6470 -1.8431 -3.0519 8 6 5.5675 -1.5371 -2.1517 9 7 6.2247 -2.1253 -3.1286 10 14 6.4963 -0.8356 -0.6907 11 1 6.6280 -1.8777 0.3590 12 1 7.8471 -0.3985 -1.1264 13 1 5.7525 0.3272 -0.1432 14 7 2.0183 -0.6905 1.1962 15 6 1.6644 -2.0931 1.4281 16 6 2.7931 -0.0355 2.0834 17 8 3.0088 1.1524 1.9414 18 6 3.3802 -0.7610 3.2281 19 6 3.5433 -2.1468 3.1714 20 6 4.0977 -2.8179 4.2431 21 9 4.2614 -4.1579 4.1873 22 6 4.4820 -2.1210 5.3784 23 6 4.3189 -0.7504 5.4440 24 6 3.7698 -0.0643 4.3759 25 9 3.6104 1.2756 4.4416 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.6055 -1.7198 -1.2951 30 1 1.7517 -0.1583 -2.1369 31 1 3.9825 -0.4622 -0.4319 32 1 7.1915 -2.1942 -3.0900 33 1 2.3553 -2.7369 0.8838 34 1 0.6477 -2.2738 1.0789 35 1 1.7268 -2.3122 2.4940 36 1 3.2399 -2.6919 2.2898 37 1 4.9107 -2.6519 6.2156 38 1 4.6208 -0.2137 6.3313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753696754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:12 Heat of formation + Delta-G solvation = -53.892815 kcal Electronic energy + Delta-G solvation = -24973.733638 eV Core-core repulsion = 21068.126659 eV Total energy + Delta-G solvation = -3905.606980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.12323 -49.01506 -40.49920 -38.43139 -36.61690 -34.39003 -32.81372 -31.16997 -30.29931 -30.24582 -27.24837 -25.99396 -24.57535 -23.18184 -22.19726 -21.22724 -19.56967 -18.00089 -17.69535 -17.63353 -17.33054 -16.56250 -16.09587 -15.85514 -15.51260 -15.18768 -14.69436 -14.55685 -14.55385 -14.08868 -13.91063 -13.44740 -13.01725 -12.91744 -12.78455 -12.61475 -12.45897 -12.41327 -12.06355 -11.98195 -11.87075 -11.23894 -10.97051 -10.85069 -10.58021 -10.13644 -9.85782 -9.60686 -9.47851 -8.91926 -8.85699 -8.51560 -7.24851 -5.78518 -3.13640 0.34713 0.68323 2.58557 2.93019 3.29676 3.36660 3.45607 3.48748 3.85848 3.88830 4.16463 4.37058 4.58404 4.59476 4.75737 4.93496 5.07426 5.21732 5.27168 5.43162 5.49374 5.51423 5.52622 5.57162 5.65118 5.69512 5.74644 5.77974 5.89289 5.98135 6.18506 6.30114 6.42124 6.56215 6.75197 7.37854 7.97024 8.15948 8.40774 9.19783 9.92825 10.12540 11.39653 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.012192 B = 0.006624 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.963927 B = 4226.343747 C = 5043.566601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.122 3.878 3 H 0.103 0.897 4 C 0.148 3.852 5 N -0.753 5.753 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.009 3.991 9 N -0.932 5.932 10 Si 0.871 3.129 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.274 1.274 14 N -0.590 5.590 15 C 0.056 3.944 16 C 0.557 3.443 17 O -0.521 6.521 18 C -0.140 4.140 19 C -0.112 4.112 20 C 0.081 3.919 21 F -0.130 7.130 22 C -0.102 4.102 23 C -0.138 4.138 24 C 0.146 3.854 25 F -0.113 7.113 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.039 0.961 31 H 0.362 0.638 32 H 0.259 0.741 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.176 0.824 37 H 0.150 0.850 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.303 -0.911 18.548 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.121 0.879 4 C 0.020 3.980 5 N -0.399 5.399 6 C -0.374 4.374 7 H 0.109 0.891 8 C -0.187 4.187 9 N -0.580 5.580 10 Si 0.701 3.299 11 H -0.210 1.210 12 H -0.215 1.215 13 H -0.199 1.199 14 N -0.322 5.322 15 C -0.086 4.086 16 C 0.344 3.656 17 O -0.398 6.398 18 C -0.144 4.144 19 C -0.130 4.130 20 C 0.061 3.939 21 F -0.109 7.109 22 C -0.121 4.121 23 C -0.157 4.157 24 C 0.125 3.875 25 F -0.091 7.091 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.195 0.805 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.193 0.807 37 H 0.167 0.833 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.161 -0.386 18.220 20.865 hybrid contribution 0.944 0.301 0.929 1.358 sum -9.217 -0.085 19.149 21.252 Atomic orbital electron populations 1.22047 0.94526 1.02333 1.02450 1.21547 0.93975 0.98530 0.83979 0.87897 1.21001 0.85739 0.97524 0.93725 1.42665 1.01262 1.71231 1.24712 1.19033 0.89846 1.29210 0.99264 0.89110 1.24613 0.96146 1.00490 0.97442 1.69695 1.07328 1.48519 1.32457 0.86729 0.80136 0.79519 0.83555 1.20996 1.21462 1.19945 1.47597 1.49872 1.12420 1.22358 1.22502 1.02053 0.82183 1.01877 1.17893 0.79067 0.86611 0.82021 1.90833 1.59853 1.14341 1.74724 1.19926 1.05435 0.93613 0.95414 1.22279 0.97247 0.93438 1.00059 1.17516 1.02420 0.78102 0.95821 1.91552 1.93463 1.29117 1.96725 1.21175 0.99382 0.93884 0.97706 1.20961 1.01724 0.94079 0.98902 1.17676 0.97988 0.78054 0.93748 1.91599 1.92595 1.28595 1.96321 0.92087 0.92431 0.90978 0.95103 0.94286 0.80532 0.93047 0.90616 0.90561 0.90036 0.80708 0.83252 0.83002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.16 37.16 0.34 -1.47 16 2 C 0.12 1.94 2.80 -67.93 -0.19 1.75 16 3 H 0.10 1.87 6.91 -51.93 -0.36 1.51 16 4 C 0.15 2.79 5.56 -4.05 -0.02 2.77 16 5 N -0.75 -18.19 5.24 -59.91 -0.31 -18.50 16 6 C -0.24 -6.94 10.47 -15.06 -0.16 -7.10 16 7 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 8 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 9 N -0.93 -29.58 13.97 55.49 0.78 -28.80 16 10 Si 0.87 23.17 27.74 -169.99 -4.71 18.46 16 11 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 13 H -0.27 -7.31 6.52 56.52 0.37 -6.94 16 14 N -0.59 -9.18 2.24 -175.10 -0.39 -9.58 16 15 C 0.06 0.67 7.86 59.85 0.47 1.14 16 16 C 0.56 9.85 7.18 -12.40 -0.09 9.76 16 17 O -0.52 -11.00 15.00 5.31 0.08 -10.92 16 18 C -0.14 -2.10 5.56 -104.92 -0.58 -2.68 16 19 C -0.11 -1.46 7.53 -39.12 -0.29 -1.75 16 20 C 0.08 0.94 7.29 -39.49 -0.29 0.65 16 21 F -0.13 -1.56 17.26 2.25 0.04 -1.52 16 22 C -0.10 -0.96 10.01 -39.45 -0.40 -1.35 16 23 C -0.14 -1.37 10.01 -39.57 -0.40 -1.77 16 24 C 0.15 2.01 7.25 -38.96 -0.28 1.73 16 25 F -0.11 -1.77 15.80 2.25 0.04 -1.73 16 26 H 0.06 0.62 6.70 -51.93 -0.35 0.27 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.56 7.84 -51.93 -0.41 0.15 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.36 9.03 4.93 -40.82 -0.20 8.83 16 32 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 33 H 0.08 1.00 7.19 -51.93 -0.37 0.62 16 34 H 0.08 0.74 6.46 -51.93 -0.34 0.40 16 35 H 0.08 0.81 4.97 -51.93 -0.26 0.55 16 36 H 0.18 2.21 4.21 -52.49 -0.22 1.99 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 320.28 15.07 4.83 4.83 Total: -1.00 -35.08 320.28 -5.86 -40.94 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.21 Total: 4.98 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.98 Total: 1.85 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.07 Total: -56.88 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.07 Total: -3.25 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.08 -5.86 -40.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753696754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.955 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds