Wall clock time and date at job start Fri Apr 10 2020 20:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47774 * 2 1 4 4 C 1.53003 * 109.47302 * 239.99373 * 2 1 3 5 5 N 1.46502 * 109.47240 * 185.00213 * 4 2 1 6 6 C 1.46501 * 120.00158 * 270.00265 * 5 4 2 7 7 C 1.36931 * 120.00049 * 89.99957 * 5 4 2 8 8 H 1.08000 * 120.00117 * 342.69887 * 7 5 4 9 9 C 1.38807 * 120.00409 * 162.96762 * 7 5 4 10 10 N 1.31624 * 119.99941 * 345.51115 * 9 7 5 11 11 Si 1.86804 * 120.00458 * 165.51342 * 9 7 5 12 12 H 1.48499 * 109.47119 * 89.99891 * 11 9 7 13 13 H 1.48500 * 109.46797 * 210.00106 * 11 9 7 14 14 H 1.48501 * 109.46780 * 329.99829 * 11 9 7 15 15 N 1.46507 * 109.46832 * 119.99568 * 2 1 3 16 16 C 1.34773 * 119.99879 * 274.99862 * 15 2 1 17 17 O 1.21565 * 120.00325 * 0.02562 * 16 15 2 18 18 C 1.47734 * 119.99840 * 180.02562 * 16 15 2 19 19 C 1.39652 * 120.10783 * 359.72064 * 18 16 15 20 20 C 1.37844 * 119.92526 * 179.69761 * 19 18 16 21 21 C 1.38617 * 120.14674 * 0.58539 * 20 19 18 22 22 F 1.35091 * 119.89148 * 179.69896 * 21 20 19 23 23 C 1.38834 * 120.21440 * 359.71525 * 21 20 19 24 24 F 1.35098 * 119.96058 * 180.02562 * 23 21 20 25 25 C 1.38056 * 120.07807 * 359.97438 * 23 21 20 26 26 H 1.08998 * 109.47320 * 300.00975 * 1 2 3 27 27 H 1.09000 * 109.47013 * 60.00633 * 1 2 3 28 28 H 1.08997 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46840 * 65.00327 * 4 2 1 30 30 H 1.09000 * 109.46835 * 305.00385 * 4 2 1 31 31 H 1.08998 * 109.46971 * 265.05415 * 6 5 4 32 32 H 1.09001 * 109.47035 * 25.04694 * 6 5 4 33 33 H 1.08999 * 109.47055 * 145.05276 * 6 5 4 34 34 H 0.96994 * 120.00731 * 179.97438 * 10 9 7 35 35 H 0.96998 * 119.99668 * 94.99991 * 15 2 1 36 36 H 1.08007 * 120.03700 * 359.97438 * 19 18 16 37 37 H 1.07999 * 119.93275 * 180.27852 * 20 19 18 38 38 H 1.07995 * 120.07687 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5001 -0.8266 -1.1905 6 6 4.3344 0.2338 -1.7612 7 6 4.0849 -1.9159 -0.6021 8 1 3.5078 -2.5497 0.0550 9 6 5.4211 -2.2026 -0.8456 10 7 6.0484 -1.6172 -1.8437 11 14 6.3289 -3.4194 0.2429 12 1 6.1900 -4.7865 -0.3200 13 1 7.7666 -3.0525 0.3033 14 1 5.7516 -3.3862 1.6107 15 7 2.0182 -0.6906 1.1963 16 6 2.1469 -0.0181 2.3572 17 8 1.8574 1.1613 2.4118 18 6 2.6399 -0.7143 3.5633 19 6 2.9676 -2.0706 3.5046 20 6 3.4330 -2.7150 4.6307 21 6 3.5651 -2.0227 5.8244 22 9 4.0160 -2.6608 6.9264 23 6 3.2351 -0.6758 5.8911 24 9 3.3663 -0.0060 7.0570 25 6 2.7741 -0.0199 4.7672 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7517 -0.1585 -2.1370 30 1 1.6053 -1.7199 -1.2950 31 1 4.6154 -0.0336 -2.7798 32 1 3.7755 1.1696 -1.7723 33 1 5.2330 0.3544 -1.1561 34 1 6.9822 -1.8172 -2.0138 35 1 2.2489 -1.6317 1.1528 36 1 2.8606 -2.6129 2.5767 37 1 3.6908 -3.7627 4.5843 38 1 2.5178 1.0280 4.8190 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313561.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:28 Heat of formation + Delta-G solvation = -74.883412 kcal Electronic energy + Delta-G solvation = -24406.242707 eV Core-core repulsion = 20499.725506 eV Total energy + Delta-G solvation = -3906.517200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.60564 -48.67530 -40.05450 -38.14695 -36.42610 -34.19328 -31.93592 -31.14644 -30.74661 -29.55876 -26.26582 -25.71175 -24.28423 -23.23083 -21.94981 -20.72950 -19.99815 -18.46674 -17.67212 -17.18026 -16.75297 -16.44413 -16.07719 -15.64060 -15.14828 -15.08572 -14.60922 -14.56878 -14.20154 -14.02186 -13.83002 -13.15925 -13.09577 -13.00339 -12.69292 -12.35757 -12.10125 -11.93281 -11.69038 -11.44797 -11.14139 -10.95140 -10.89643 -10.48194 -10.36798 -10.11840 -9.95765 -9.67150 -9.27587 -8.92920 -8.63388 -8.54825 -6.90097 -5.82582 -3.24808 0.44764 0.85134 2.73393 3.27934 3.31537 3.36880 3.37484 3.63609 3.71178 4.19103 4.37823 4.40570 4.72656 4.77546 4.94905 5.23165 5.39243 5.46149 5.56747 5.62679 5.66483 5.71910 5.84357 5.88129 6.00104 6.06358 6.12205 6.36971 6.39155 6.51980 6.69819 6.75035 6.96609 7.37042 7.54640 7.73380 7.92939 8.25617 8.54551 9.11517 9.76415 10.24490 11.22207 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.005793 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.557080 B = 4832.464908 C = 6388.419220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.165 3.835 7 C -0.253 4.253 8 H 0.065 0.935 9 C 0.003 3.997 10 N -0.903 5.903 11 Si 0.896 3.104 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.278 1.278 15 N -0.685 5.685 16 C 0.557 3.443 17 O -0.548 6.548 18 C -0.105 4.105 19 C -0.060 4.060 20 C -0.131 4.131 21 C 0.085 3.915 22 F -0.127 7.127 23 C 0.057 3.943 24 F -0.128 7.128 25 C -0.071 4.071 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.027 0.973 32 H -0.004 1.004 33 H 0.048 0.952 34 H 0.253 0.747 35 H 0.403 0.597 36 H 0.148 0.852 37 H 0.152 0.848 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.444 -1.096 9.778 12.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.324 5.324 6 C 0.020 3.980 7 C -0.382 4.382 8 H 0.083 0.917 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.726 3.274 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.203 1.203 15 N -0.335 5.335 16 C 0.343 3.657 17 O -0.428 6.428 18 C -0.108 4.108 19 C -0.079 4.079 20 C -0.149 4.149 21 C 0.064 3.936 22 F -0.106 7.106 23 C 0.037 3.963 24 F -0.106 7.106 25 C -0.091 4.091 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.240 0.760 36 H 0.166 0.834 37 H 0.170 0.830 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.419 -0.282 9.775 12.904 hybrid contribution 1.026 -1.155 0.970 1.824 sum -7.393 -1.437 10.745 13.121 Atomic orbital electron populations 1.22126 0.96247 1.01569 1.01854 1.21977 0.92375 0.98472 0.86307 0.90163 1.21059 0.86046 0.98313 0.93332 1.43880 0.98895 1.21299 1.68284 1.20807 0.93054 0.86019 0.98089 1.18955 0.94030 1.04184 1.21024 0.91739 1.24897 0.98089 0.99094 0.97473 1.70091 1.10823 1.45525 1.28367 0.86403 0.79753 0.80892 0.80384 1.21416 1.21558 1.20344 1.45865 1.64574 1.14394 1.08674 1.17896 0.78208 0.86451 0.83122 1.90739 1.51471 1.15342 1.85238 1.20003 1.02448 0.94018 0.94367 1.21393 0.94487 0.93410 0.98598 1.21044 1.01657 1.01735 0.90499 1.17901 1.01504 0.89544 0.84626 1.91530 1.86458 1.81455 1.51126 1.17465 1.06239 0.89173 0.83415 1.91534 1.93904 1.79886 1.45311 1.21138 0.96602 1.01747 0.89570 0.92781 0.91897 0.92785 0.92741 0.92954 0.95502 0.98548 0.93353 0.93642 0.75962 0.83420 0.83024 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 2 C 0.12 1.91 2.88 -67.93 -0.20 1.72 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 4 C 0.14 2.54 5.30 -4.04 -0.02 2.51 16 5 N -0.60 -13.68 2.82 -181.12 -0.51 -14.19 16 6 C 0.16 3.91 8.97 59.85 0.54 4.45 16 7 C -0.25 -6.10 8.81 -15.06 -0.13 -6.23 16 8 H 0.06 1.42 6.40 -52.49 -0.34 1.08 16 9 C 0.00 0.08 5.09 -17.43 -0.09 -0.01 16 10 N -0.90 -25.07 10.45 55.49 0.58 -24.49 16 11 Si 0.90 20.16 29.58 -169.99 -5.03 15.13 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 N -0.68 -11.25 4.44 -54.78 -0.24 -11.49 16 16 C 0.56 9.52 7.73 -12.38 -0.10 9.42 16 17 O -0.55 -10.80 16.01 5.31 0.08 -10.71 16 18 C -0.10 -1.54 5.87 -104.97 -0.62 -2.15 16 19 C -0.06 -0.77 9.53 -39.20 -0.37 -1.15 16 20 C -0.13 -1.55 10.01 -39.59 -0.40 -1.95 16 21 C 0.08 1.10 7.31 -39.22 -0.29 0.81 16 22 F -0.13 -1.68 17.17 2.25 0.04 -1.64 16 23 C 0.06 0.77 7.30 -39.43 -0.29 0.48 16 24 F -0.13 -1.76 17.17 2.25 0.04 -1.72 16 25 C -0.07 -0.98 9.57 -39.13 -0.37 -1.36 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 31 H 0.03 0.68 7.51 -51.93 -0.39 0.29 16 32 H 0.00 -0.09 8.03 -51.93 -0.42 -0.50 16 33 H 0.05 1.26 6.95 -51.93 -0.36 0.90 16 34 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.40 6.29 4.61 -40.82 -0.19 6.10 16 36 H 0.15 1.76 6.40 -52.48 -0.34 1.42 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.16 2.12 7.65 -52.49 -0.40 1.72 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -29.17 328.85 -6.55 -35.72 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.48 Total: 3.67 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -1.98 Total: 4.78 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.17 Total: -50.18 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.71 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.17 -6.55 -35.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313561.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.161 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds