Wall clock time and date at job start Fri Apr 10 2020 20:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47154 * 2 1 4 4 C 1.52991 * 109.47153 * 120.00391 * 2 1 3 5 5 N 1.46502 * 109.47228 * 174.99984 * 4 2 1 6 6 C 1.46501 * 119.99778 * 269.99630 * 5 4 2 7 7 C 1.36933 * 120.00136 * 89.99807 * 5 4 2 8 8 H 1.08003 * 119.99995 * 23.67414 * 7 5 4 9 9 C 1.38814 * 120.00205 * 203.67216 * 7 5 4 10 10 N 1.31618 * 119.99750 * 11.22160 * 9 7 5 11 11 Si 1.86794 * 120.00316 * 191.22350 * 9 7 5 12 12 H 1.48508 * 109.47301 * 89.99748 * 11 9 7 13 13 H 1.48495 * 109.47508 * 209.99643 * 11 9 7 14 14 H 1.48495 * 109.47028 * 330.00123 * 11 9 7 15 15 N 1.46506 * 109.46971 * 240.00358 * 2 1 3 16 16 C 1.34771 * 120.00088 * 84.99679 * 15 2 1 17 17 O 1.21570 * 120.00386 * 0.02562 * 16 15 2 18 18 C 1.47730 * 119.99651 * 179.97438 * 16 15 2 19 19 C 1.39655 * 120.10659 * 180.02562 * 18 16 15 20 20 C 1.37851 * 119.92437 * 180.26020 * 19 18 16 21 21 C 1.38609 * 120.14693 * 359.44424 * 20 19 18 22 22 F 1.35100 * 119.88892 * 180.26075 * 21 20 19 23 23 C 1.38837 * 120.21940 * 0.55802 * 21 20 19 24 24 F 1.35097 * 119.96409 * 179.74629 * 23 21 20 25 25 C 1.38056 * 120.06919 * 359.72267 * 23 21 20 26 26 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47176 * 300.00268 * 1 2 3 28 28 H 1.08996 * 109.46993 * 59.99731 * 1 2 3 29 29 H 1.09003 * 109.47339 * 294.99679 * 4 2 1 30 30 H 1.09001 * 109.47221 * 54.99716 * 4 2 1 31 31 H 1.08999 * 109.47057 * 94.62203 * 6 5 4 32 32 H 1.09006 * 109.47206 * 214.62285 * 6 5 4 33 33 H 1.08999 * 109.47178 * 334.62170 * 6 5 4 34 34 H 0.96997 * 120.00109 * 180.02562 * 10 9 7 35 35 H 0.97005 * 119.99846 * 264.99991 * 15 2 1 36 36 H 1.07997 * 120.03558 * 359.97438 * 19 18 16 37 37 H 1.08004 * 119.92318 * 179.70384 * 20 19 18 38 38 H 1.08002 * 120.06839 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8264 1.1904 6 6 4.1258 -1.9920 0.5611 7 6 4.2799 0.1647 1.7239 8 1 3.8837 0.8063 2.4971 9 6 5.5796 0.3449 1.2709 10 7 5.9915 -0.2794 0.1879 11 14 6.7440 1.4732 2.1984 12 1 7.4755 0.6917 3.2278 13 1 7.7157 2.0712 1.2480 14 1 5.9667 2.5536 2.8569 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0182 -2.3572 17 8 1.8583 1.1615 -2.4117 18 6 2.6399 -0.7145 -3.5632 19 6 2.7746 -0.0199 -4.7673 20 6 3.2298 -0.6746 -5.8917 21 6 3.5651 -2.0180 -5.8272 22 9 4.0157 -2.6532 -6.9311 23 6 3.4335 -2.7145 -4.6333 24 9 3.7569 -4.0250 -4.5775 25 6 2.9730 -2.0691 -3.5031 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.7517 -0.1584 2.1369 30 1 1.6053 -1.7198 1.2950 31 1 4.3546 -1.7637 -0.4799 32 1 5.0463 -2.2399 1.0896 33 1 3.4419 -2.8397 0.6053 34 1 6.8998 -0.1539 -0.1284 35 1 2.2490 -1.6318 -1.1528 36 1 2.5180 1.0279 -4.8185 37 1 3.3294 -0.1386 -6.8240 38 1 2.8711 -2.6108 -2.5744 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754313562.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:31 Heat of formation + Delta-G solvation = -76.212023 kcal Electronic energy + Delta-G solvation = -24475.938342 eV Core-core repulsion = 20569.363529 eV Total energy + Delta-G solvation = -3906.574813 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.55784 -48.62481 -39.98325 -38.08684 -36.34625 -34.12329 -32.04065 -30.88372 -30.59311 -29.69798 -26.23612 -25.65832 -24.23257 -23.24540 -21.82147 -20.60570 -20.04002 -18.39388 -17.46817 -17.21321 -16.75814 -16.39527 -16.27318 -15.42236 -15.03793 -14.92191 -14.56861 -14.55363 -14.31276 -13.78624 -13.71491 -13.37922 -13.06904 -12.92901 -12.49162 -12.22750 -12.15269 -11.86340 -11.52121 -11.48020 -11.15073 -10.87392 -10.81992 -10.58486 -10.26168 -9.99531 -9.89650 -9.58812 -9.25887 -8.85438 -8.64037 -8.44138 -6.79267 -5.75922 -3.22746 0.50341 0.88656 2.80028 3.37408 3.44025 3.45248 3.48616 3.63388 3.81178 4.19381 4.39321 4.48238 4.68082 4.89339 5.05292 5.30045 5.44561 5.51439 5.58089 5.65405 5.67981 5.78744 5.88800 5.94217 6.04948 6.09857 6.19015 6.42576 6.47987 6.55749 6.57641 6.81919 7.05503 7.26158 7.59939 7.77830 7.95764 8.35794 8.62358 9.19424 9.81510 10.29472 11.29161 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.014240 B = 0.004948 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.883821 B = 5657.015885 C = 6382.866054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.089 0.911 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.159 3.841 7 C -0.258 4.258 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.689 5.689 16 C 0.562 3.438 17 O -0.541 6.541 18 C -0.100 4.100 19 C -0.044 4.044 20 C -0.134 4.134 21 C 0.083 3.917 22 F -0.128 7.128 23 C 0.063 3.937 24 F -0.126 7.126 25 C -0.088 4.088 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.031 0.969 32 H 0.044 0.956 33 H -0.006 1.006 34 H 0.252 0.748 35 H 0.394 0.606 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 -4.591 -9.257 13.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.107 0.893 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.014 3.986 7 C -0.387 4.387 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.735 3.265 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.338 5.338 16 C 0.348 3.652 17 O -0.420 6.420 18 C -0.103 4.103 19 C -0.063 4.063 20 C -0.153 4.153 21 C 0.062 3.938 22 F -0.106 7.106 23 C 0.043 3.957 24 F -0.105 7.105 25 C -0.108 4.108 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.013 0.987 34 H 0.062 0.938 35 H 0.230 0.770 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.788 -3.844 -9.351 13.396 hybrid contribution 1.206 -0.232 0.181 1.241 sum -7.582 -4.076 -9.170 12.578 Atomic orbital electron populations 1.22156 0.96628 1.01205 1.01857 1.21954 0.91805 0.99304 0.86066 0.89321 1.21216 0.85830 0.97268 0.94330 1.43884 0.99032 1.20865 1.68145 1.20879 0.94689 0.85066 0.97919 1.19170 0.94625 1.10631 1.14293 0.91385 1.25027 0.98897 0.99022 0.96305 1.70022 1.17234 1.45598 1.21983 0.86260 0.80939 0.80450 0.78897 1.21556 1.21801 1.20486 1.45740 1.65180 1.13699 1.09181 1.17823 0.78016 0.86424 0.82976 1.90744 1.51083 1.15090 1.85100 1.20051 1.01906 0.92927 0.95451 1.21214 0.94148 1.01071 0.89881 1.21032 1.01661 0.91763 1.00849 1.17891 1.01812 0.91746 0.82320 1.91529 1.86533 1.81958 1.50630 1.17443 1.04952 0.79433 0.93858 1.91544 1.90521 1.31522 1.96911 1.21267 0.97436 0.94522 0.97528 0.93126 0.91902 0.92872 0.92083 0.93968 0.95051 0.93735 0.98706 0.93813 0.77017 0.82931 0.83141 0.83286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.90 16 2 C 0.12 2.06 2.88 -67.93 -0.20 1.87 16 3 H 0.09 1.92 7.58 -51.93 -0.39 1.53 16 4 C 0.14 2.62 5.33 -4.05 -0.02 2.60 16 5 N -0.60 -13.87 2.78 -181.12 -0.50 -14.38 16 6 C 0.16 3.57 7.60 59.85 0.46 4.03 16 7 C -0.26 -6.81 9.66 -15.06 -0.15 -6.96 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -25.53 10.66 55.49 0.59 -24.94 16 11 Si 0.90 21.79 29.57 -169.99 -5.03 16.76 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 N -0.69 -11.94 4.36 -54.79 -0.24 -12.18 16 16 C 0.56 10.21 7.73 -12.38 -0.10 10.11 16 17 O -0.54 -11.38 16.00 5.30 0.08 -11.29 16 18 C -0.10 -1.51 5.87 -104.97 -0.62 -2.13 16 19 C -0.04 -0.58 9.59 -39.19 -0.38 -0.95 16 20 C -0.13 -1.51 10.01 -39.59 -0.40 -1.91 16 21 C 0.08 1.06 7.31 -39.22 -0.29 0.77 16 22 F -0.13 -1.67 17.17 2.25 0.04 -1.63 16 23 C 0.06 0.87 7.30 -39.43 -0.29 0.58 16 24 F -0.13 -1.80 17.18 2.25 0.04 -1.76 16 25 C -0.09 -1.22 9.51 -39.13 -0.37 -1.59 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 30 H 0.04 0.68 7.86 -51.93 -0.41 0.28 16 31 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 32 H 0.04 1.11 7.30 -51.93 -0.38 0.74 16 33 H -0.01 -0.10 7.84 -51.93 -0.41 -0.51 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.39 6.24 5.20 -40.82 -0.21 6.03 16 36 H 0.15 1.90 7.64 -52.49 -0.40 1.49 16 37 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.15 1.89 6.40 -52.49 -0.34 1.56 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -30.68 329.86 -6.67 -37.35 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.55 Total: 2.49 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -2.08 Total: 4.60 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.15 Total: -51.50 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.68 -6.67 -37.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754313562.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.861 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds