Wall clock time and date at job start Fri Apr 10 2020 20:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99760 * 2 1 4 4 C 1.52999 * 109.46991 * 269.99962 * 3 2 1 5 5 C 1.53003 * 109.46663 * 180.02562 * 4 3 2 6 6 N 1.46499 * 109.46737 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99666 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00339 * 359.97438 * 7 6 5 9 9 C 1.38815 * 119.99776 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00062 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 119.99974 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.47102 * 90.00809 * 11 9 7 13 13 H 1.48501 * 109.47488 * 210.00572 * 11 9 7 14 14 H 1.48497 * 109.47448 * 330.00539 * 11 9 7 15 15 C 1.34779 * 119.99773 * 179.97438 * 2 1 3 16 16 O 1.21573 * 119.99753 * 184.86929 * 15 2 1 17 17 C 1.47697 * 120.00248 * 4.60291 * 15 2 1 18 18 C 1.39658 * 120.15138 * 311.74657 * 17 15 2 19 19 C 1.38065 * 119.84797 * 179.74693 * 18 17 15 20 20 F 1.35102 * 119.91997 * 180.25733 * 19 18 17 21 21 C 1.38655 * 120.16669 * 0.50748 * 19 18 17 22 22 C 1.38190 * 120.31625 * 359.76725 * 21 19 18 23 23 C 1.38308 * 120.14062 * 359.97438 * 22 21 19 24 24 F 1.35102 * 120.08423 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.47079 * 264.89990 * 1 2 3 26 26 H 1.08991 * 109.47481 * 24.90209 * 1 2 3 27 27 H 1.09005 * 109.47106 * 144.90567 * 1 2 3 28 28 H 1.09001 * 109.47066 * 30.00541 * 3 2 1 29 29 H 1.08998 * 109.46741 * 149.99991 * 3 2 1 30 30 H 1.09002 * 109.46993 * 299.99927 * 4 3 2 31 31 H 1.08996 * 109.46849 * 60.00529 * 4 3 2 32 32 H 1.08995 * 109.47284 * 299.99987 * 5 4 3 33 33 H 1.08998 * 109.47078 * 60.00024 * 5 4 3 34 34 H 0.96993 * 120.00263 * 359.97438 * 6 5 4 35 35 H 0.97000 * 119.99900 * 179.97438 * 10 9 7 36 36 H 1.07999 * 120.07704 * 359.97438 * 18 17 15 37 37 H 1.08008 * 119.84350 * 179.74615 * 21 19 18 38 38 H 1.08001 * 119.92716 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2179 3.0351 -1.4424 6 7 3.4616 3.4584 -2.8236 7 6 4.1355 4.6239 -3.0738 8 1 4.4871 5.2313 -2.2530 9 6 4.3659 5.0252 -4.3826 10 7 5.0132 6.1457 -4.6231 11 14 3.7572 3.9750 -5.8024 12 1 2.3838 4.3974 -6.1773 13 1 4.6625 4.1445 -6.9673 14 1 3.7414 2.5481 -5.3915 15 6 2.1389 -1.1673 0.0005 16 8 3.3513 -1.1691 0.0899 17 6 1.4040 -2.4443 -0.1016 18 6 0.2971 -2.6840 0.7156 19 6 -0.3885 -3.8778 0.6113 20 9 -1.4626 -4.1090 1.3975 21 6 0.0257 -4.8423 -0.2946 22 6 1.1235 -4.6147 -1.1026 23 6 1.8165 -3.4212 -1.0126 24 9 2.8899 -3.2001 -1.8026 25 1 -0.3633 -0.0914 1.0236 26 1 -0.3634 0.9320 -0.4327 27 1 -0.3633 -0.8409 -0.5909 28 1 1.6084 2.0283 0.5139 29 1 3.1498 1.1384 0.5138 30 1 3.0416 0.9507 -1.9563 31 1 1.5000 1.8407 -1.9562 32 1 2.6292 3.7949 -0.9285 33 1 4.1703 2.9044 -0.9287 34 1 3.1462 2.9127 -3.5609 35 1 5.1745 6.4259 -5.5376 36 1 -0.0242 -1.9356 1.4250 37 1 -0.5120 -5.7761 -0.3690 38 1 1.4409 -5.3705 -1.8058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754375595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:33 Heat of formation + Delta-G solvation = -77.285003 kcal Electronic energy + Delta-G solvation = -23417.230599 eV Core-core repulsion = 19510.609258 eV Total energy + Delta-G solvation = -3906.621341 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.123 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.45318 -49.28952 -40.57708 -38.63939 -36.38241 -35.07140 -32.79140 -31.75269 -30.57368 -30.13072 -27.27355 -26.06894 -24.23784 -23.32916 -22.29868 -21.08768 -20.10144 -18.15835 -18.03725 -17.73088 -17.51527 -16.87756 -16.38827 -16.11142 -15.76798 -15.42233 -14.87832 -14.79042 -14.63408 -14.47927 -14.09011 -13.77035 -13.48778 -13.23483 -13.00689 -12.83318 -12.78588 -12.41135 -12.18617 -12.04095 -11.87940 -11.22084 -10.92031 -10.85389 -10.53337 -10.22334 -10.09890 -9.80004 -9.57155 -9.13632 -8.88217 -8.86990 -7.20710 -5.74359 -3.09743 0.13246 0.38990 2.24868 2.59076 2.90431 3.39699 3.43453 3.47211 3.55698 3.60864 3.86746 4.10173 4.28651 4.48529 4.61902 4.77409 4.90202 4.98183 5.10435 5.18242 5.24862 5.32346 5.34698 5.39740 5.45674 5.52793 5.57102 5.74296 5.88875 5.99383 6.12160 6.21640 6.33567 6.74200 6.76454 7.04901 7.83032 8.02043 8.44884 9.23880 9.96452 10.16437 11.44158 Molecular weight = 298.12amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.003075 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.926932 B = 9102.886596 C = 9570.214318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.606 5.606 3 C 0.118 3.882 4 C -0.145 4.145 5 C 0.161 3.839 6 N -0.757 5.757 7 C -0.244 4.244 8 H 0.091 0.909 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.885 3.115 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.557 3.443 16 O -0.511 6.511 17 C -0.133 4.133 18 C -0.098 4.098 19 C 0.084 3.916 20 F -0.131 7.131 21 C -0.105 4.105 22 C -0.129 4.129 23 C 0.141 3.859 24 F -0.115 7.115 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.945 -24.309 12.230 31.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.339 5.339 3 C -0.004 4.004 4 C -0.184 4.184 5 C 0.033 3.967 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.715 3.285 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.344 3.656 16 O -0.386 6.386 17 C -0.137 4.137 18 C -0.117 4.117 19 C 0.065 3.935 20 F -0.110 7.110 21 C -0.124 4.124 22 C -0.148 4.148 23 C 0.121 3.879 24 F -0.093 7.093 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.193 0.807 35 H 0.069 0.931 36 H 0.171 0.829 37 H 0.169 0.831 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.158 -24.058 12.327 30.993 hybrid contribution -0.510 -0.665 -1.177 1.445 sum -15.668 -24.724 11.150 31.322 Atomic orbital electron populations 1.22045 0.79357 1.04084 1.01738 1.47789 1.07176 1.06050 1.72865 1.21574 0.97910 0.82906 0.98006 1.22134 1.01140 0.99158 0.95942 1.20511 0.96655 0.91789 0.87734 1.42704 1.69667 1.26281 1.01592 1.19079 1.27799 0.96844 0.93635 0.89154 1.24675 1.00457 0.97198 0.96913 1.69702 1.46121 1.23022 1.19464 0.86531 0.78426 0.80341 0.83185 1.21086 1.21654 1.20344 1.17944 0.87050 0.83141 0.77500 1.90876 1.13021 1.86776 1.47972 1.19858 0.98086 0.96156 0.99592 1.21269 0.93701 0.97072 0.99680 1.17455 0.87291 0.95120 0.93675 1.91551 1.52375 1.94728 1.72334 1.21176 0.96852 0.99628 0.94723 1.21020 0.95872 0.96430 1.01473 1.17662 0.85727 0.93733 0.90804 1.91625 1.51842 1.94746 1.71126 0.92150 0.89942 0.91060 0.89787 0.89172 0.91607 0.91887 0.95419 0.95297 0.80704 0.93066 0.82872 0.83134 0.82805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.05 59.85 0.54 1.06 16 2 N -0.61 -6.89 2.87 -182.75 -0.53 -7.42 16 3 C 0.12 1.50 5.42 -4.04 -0.02 1.48 16 4 C -0.14 -2.30 5.65 -26.73 -0.15 -2.45 16 5 C 0.16 3.19 6.26 -4.04 -0.03 3.16 16 6 N -0.76 -18.84 5.41 -59.91 -0.32 -19.16 16 7 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -30.03 13.97 55.49 0.78 -29.26 16 11 Si 0.88 22.75 27.74 -169.99 -4.71 18.04 16 12 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.28 -6.81 6.52 56.52 0.37 -6.44 16 15 C 0.56 7.50 7.02 -12.40 -0.09 7.41 16 16 O -0.51 -9.03 16.17 5.30 0.09 -8.94 16 17 C -0.13 -1.38 4.92 -104.92 -0.52 -1.90 16 18 C -0.10 -0.74 7.74 -39.11 -0.30 -1.04 16 19 C 0.08 0.58 7.29 -39.49 -0.29 0.29 16 20 F -0.13 -0.96 17.26 2.25 0.04 -0.92 16 21 C -0.10 -0.59 10.01 -39.45 -0.39 -0.98 16 22 C -0.13 -0.88 10.01 -39.57 -0.40 -1.27 16 23 C 0.14 1.47 7.25 -38.97 -0.28 1.18 16 24 F -0.12 -1.54 16.48 2.25 0.04 -1.50 16 25 H 0.06 0.31 7.04 -51.93 -0.37 -0.05 16 26 H 0.08 0.55 8.03 -51.93 -0.42 0.14 16 27 H 0.07 0.47 6.25 -51.93 -0.32 0.15 16 28 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.09 1.27 7.36 -51.93 -0.38 0.89 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.36 8.79 5.53 -40.82 -0.23 8.56 16 35 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 36 H 0.15 0.89 6.23 -52.49 -0.33 0.57 16 37 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -35.99 330.79 -6.41 -42.40 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.59 Total: 2.16 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.18 Total: -0.38 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.07 Total: -55.84 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.99 -6.41 -42.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754375595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.888 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds