Wall clock time and date at job start Fri Apr 10 2020 20:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48501 * 109.47296 * 269.99927 * 3 2 1 5 5 H 1.48501 * 109.47418 * 29.99823 * 3 2 1 6 6 H 1.48498 * 109.47091 * 149.99884 * 3 2 1 7 7 C 1.37874 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99350 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00094 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00115 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.35059 * 125.75390 * 85.02524 * 15 14 13 17 17 C 1.40439 * 107.68866 * 179.97438 * 16 15 14 18 18 C 1.36245 * 107.33422 * 0.02562 * 17 16 15 19 19 C 1.47854 * 126.06038 * 180.02562 * 18 17 16 20 20 C 1.39568 * 120.14507 * 179.70034 * 19 18 17 21 21 C 1.37967 * 119.85338 * 179.69972 * 20 19 18 22 22 C 1.38350 * 120.14322 * 0.59290 * 21 20 19 23 23 C 1.38364 * 120.29299 * 359.68348 * 22 21 20 24 24 C 1.37966 * 120.14149 * 0.02562 * 23 22 21 25 25 N 1.36308 * 125.75743 * 264.71756 * 15 14 13 26 26 H 0.97000 * 125.69652 * 359.97438 * 25 15 14 27 27 H 0.96998 * 120.00187 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47002 * 60.00609 * 9 7 2 29 29 H 1.08992 * 109.47459 * 299.99647 * 9 7 2 30 30 H 0.97003 * 120.00244 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 32 32 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 33 33 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 34 34 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 35 35 H 1.08003 * 126.16091 * 0.03327 * 16 15 14 36 36 H 1.08000 * 126.33725 * 179.97438 * 17 16 15 37 37 H 1.07994 * 120.06884 * 359.97158 * 20 19 18 38 38 H 1.07996 * 119.92487 * 180.29373 * 21 20 19 39 39 H 1.07994 * 119.85816 * 179.70027 * 22 21 20 40 40 H 1.07993 * 119.92961 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.07384 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5614 -5.1049 -0.0009 13 6 2.7331 -6.0288 0.0006 14 6 1.9682 -7.3538 -0.0008 15 6 2.9475 -8.4992 -0.0009 16 6 3.5318 -9.0380 1.0911 17 6 4.3706 -10.0774 0.6572 18 6 4.2707 -10.1399 -0.7001 19 6 4.9817 -11.0899 -1.5823 20 6 4.7818 -11.0481 -2.9630 21 6 5.4531 -11.9333 -3.7811 22 6 6.3134 -12.8689 -3.2346 23 6 6.5116 -12.9193 -1.8662 24 6 5.8511 -12.0360 -1.0375 25 7 3.3885 -9.1701 -1.1024 26 1 3.1241 -8.9902 -2.0182 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8898 29 1 0.6241 -2.5567 0.8902 30 1 3.1568 -3.4354 0.0009 31 1 3.3591 -5.9711 0.8911 32 1 3.3605 -5.9708 -0.8888 33 1 1.3425 -7.4112 -0.8915 34 1 1.3406 -7.4119 0.8885 35 1 3.3805 -8.7263 2.1141 36 1 4.9825 -10.7097 1.2835 37 1 4.1066 -10.3217 -3.3903 38 1 5.3029 -11.8989 -4.8500 39 1 6.8328 -13.5627 -3.8789 40 1 7.1848 -13.6517 -1.4459 41 1 6.0069 -12.0761 0.0305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340459708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:08 Heat of formation + Delta-G solvation = 9.234775 kcal Electronic energy + Delta-G solvation = -21710.666544 eV Core-core repulsion = 18362.026512 eV Total energy + Delta-G solvation = -3348.640032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40841 -39.12135 -38.77201 -34.32423 -33.63324 -32.33950 -31.69336 -31.65907 -30.73866 -28.23287 -26.85892 -24.42466 -23.04353 -22.60877 -21.89978 -20.50761 -19.94133 -19.58894 -18.03677 -17.11597 -16.34456 -15.67816 -15.42343 -15.20410 -15.04759 -14.86944 -14.59960 -14.10604 -13.96224 -13.72514 -13.48251 -13.20149 -13.02038 -12.70644 -12.63960 -12.07514 -12.00736 -11.80657 -11.59334 -11.55282 -11.31914 -10.98189 -10.95935 -10.85763 -10.32794 -9.68344 -9.41202 -9.30198 -9.09360 -8.98120 -8.74992 -7.89875 -7.65435 -6.18015 -4.25030 0.68586 1.06376 2.26144 2.87212 3.04152 3.23157 3.29424 3.31919 3.35843 3.64164 4.09168 4.36007 4.43668 4.52284 4.61547 4.78815 4.92616 5.08672 5.10100 5.15509 5.18050 5.18576 5.32693 5.46470 5.56292 5.57346 5.69370 5.81350 5.89281 5.95824 6.05859 6.16085 6.17664 6.19755 6.36253 6.62402 6.89011 7.00202 7.29049 7.40439 7.42731 7.50170 7.65044 7.95758 8.61273 8.76246 9.08535 9.41718 10.92155 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.002093 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.505944 B =13377.560932 C =13727.706319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.713 5.713 11 C 0.496 3.504 12 O -0.559 6.559 13 C -0.135 4.135 14 C -0.037 4.037 15 C 0.045 3.955 16 C -0.197 4.197 17 C -0.166 4.166 18 C 0.035 3.965 19 C -0.004 4.004 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.129 4.129 23 C -0.112 4.112 24 C -0.108 4.108 25 N -0.549 5.549 26 H 0.412 0.588 27 H 0.266 0.734 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.391 0.609 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.185 -24.956 -3.851 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.361 5.361 11 C 0.281 3.719 12 O -0.439 6.439 13 C -0.176 4.176 14 C -0.076 4.076 15 C -0.069 4.069 16 C -0.221 4.221 17 C -0.191 4.191 18 C -0.075 4.075 19 C -0.005 4.005 20 C -0.146 4.146 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.127 4.127 25 N -0.144 5.144 26 H 0.249 0.751 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.223 0.777 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.099 -24.913 -3.989 27.982 hybrid contribution 0.797 1.172 -0.493 1.501 sum 12.896 -23.741 -4.482 27.387 Atomic orbital electron populations 1.69976 1.06104 1.27310 1.48894 1.24963 0.94934 0.99488 0.94702 0.86407 0.79629 0.82614 0.78213 1.20476 1.20983 1.19734 1.21234 0.93274 0.90488 1.53209 0.91896 1.19106 0.88350 0.82044 0.97719 1.46491 1.11147 1.06259 1.72193 1.20480 0.89455 0.84502 0.77443 1.90662 1.16999 1.85009 1.51236 1.21656 0.98589 0.93084 1.04261 1.19899 0.94394 0.88259 1.05010 1.20572 1.01959 0.98294 0.86109 1.20671 1.02944 1.00448 0.98065 1.20891 1.04010 1.01819 0.92397 1.18622 0.99759 0.95843 0.93315 1.18120 0.96106 0.94388 0.91857 1.21104 1.00780 1.00014 0.92722 1.21037 0.96703 0.95425 0.99743 1.21198 0.99146 0.99112 0.95313 1.21087 0.99453 0.98833 0.93626 1.21101 0.96478 0.94905 1.00206 1.42002 1.35800 1.27672 1.08904 0.75100 0.92442 0.95601 0.95496 0.77656 0.88839 0.89724 0.90518 0.88603 0.84296 0.84577 0.86654 0.85925 0.86061 0.85740 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 10 N -0.71 -14.82 5.55 -61.47 -0.34 -15.16 16 11 C 0.50 9.56 7.83 -10.99 -0.09 9.47 16 12 O -0.56 -13.04 15.98 5.55 0.09 -12.95 16 13 C -0.14 -1.82 5.68 -27.89 -0.16 -1.97 16 14 C -0.04 -0.47 5.04 -27.88 -0.14 -0.61 16 15 C 0.04 0.52 6.41 -81.73 -0.52 0.00 16 16 C -0.20 -2.28 10.73 -39.88 -0.43 -2.71 16 17 C -0.17 -1.82 10.23 -39.47 -0.40 -2.22 16 18 C 0.04 0.39 6.92 -82.27 -0.57 -0.18 16 19 C 0.00 -0.04 5.87 -104.97 -0.62 -0.65 16 20 C -0.13 -1.12 9.71 -39.19 -0.38 -1.50 16 21 C -0.11 -0.85 10.03 -39.64 -0.40 -1.25 16 22 C -0.13 -0.92 10.04 -39.49 -0.40 -1.32 16 23 C -0.11 -0.82 10.03 -39.63 -0.40 -1.21 16 24 C -0.11 -0.92 9.56 -39.19 -0.37 -1.29 16 25 N -0.55 -5.75 5.99 -5.76 -0.03 -5.78 16 26 H 0.41 3.48 8.08 -40.82 -0.33 3.15 16 27 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 34 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 36 H 0.14 1.21 7.26 -52.49 -0.38 0.83 16 37 H 0.12 0.85 7.18 -52.49 -0.38 0.47 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.90 7.00 -52.49 -0.37 0.53 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -33.18 354.65 -10.10 -43.28 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.55 Total: 7.13 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -5.32 Total: -12.33 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.36 Total: -46.29 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.18 -10.10 -43.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340459708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.516 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds