Wall clock time and date at job start Fri Apr 10 2020 20:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48501 * 109.47296 * 269.99927 * 3 2 1 5 5 H 1.48501 * 109.47418 * 29.99823 * 3 2 1 6 6 H 1.48498 * 109.47091 * 149.99884 * 3 2 1 7 7 C 1.37874 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99350 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00094 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00115 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99593 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.47466 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 C 1.35059 * 125.75390 * 85.02524 * 15 14 13 17 17 C 1.40439 * 107.68866 * 179.97438 * 16 15 14 18 18 C 1.36245 * 107.33422 * 0.02562 * 17 16 15 19 19 C 1.47854 * 126.06038 * 180.02562 * 18 17 16 20 20 C 1.39568 * 120.14507 * 179.70034 * 19 18 17 21 21 C 1.37967 * 119.85338 * 179.69972 * 20 19 18 22 22 C 1.38350 * 120.14322 * 0.59290 * 21 20 19 23 23 C 1.38364 * 120.29299 * 359.68348 * 22 21 20 24 24 C 1.37966 * 120.14149 * 0.02562 * 23 22 21 25 25 N 1.36308 * 125.75743 * 264.71756 * 15 14 13 26 26 H 0.97000 * 125.69652 * 359.97438 * 25 15 14 27 27 H 0.96998 * 120.00187 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47002 * 60.00609 * 9 7 2 29 29 H 1.08992 * 109.47459 * 299.99647 * 9 7 2 30 30 H 0.97003 * 120.00244 * 0.02562 * 10 9 7 31 31 H 1.09002 * 109.47120 * 59.99760 * 13 11 10 32 32 H 1.08998 * 109.46862 * 300.00562 * 13 11 10 33 33 H 1.09002 * 109.47153 * 59.99773 * 14 13 11 34 34 H 1.09001 * 109.46832 * 299.99964 * 14 13 11 35 35 H 1.08003 * 126.16091 * 0.03327 * 16 15 14 36 36 H 1.08000 * 126.33725 * 179.97438 * 17 16 15 37 37 H 1.07994 * 120.06884 * 359.97158 * 20 19 18 38 38 H 1.07996 * 119.92487 * 180.29373 * 21 20 19 39 39 H 1.07994 * 119.85816 * 179.70027 * 22 21 20 40 40 H 1.07993 * 119.92961 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.07384 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5614 -5.1049 -0.0009 13 6 2.7331 -6.0288 0.0006 14 6 1.9682 -7.3538 -0.0008 15 6 2.9475 -8.4992 -0.0009 16 6 3.5318 -9.0380 1.0911 17 6 4.3706 -10.0774 0.6572 18 6 4.2707 -10.1399 -0.7001 19 6 4.9817 -11.0899 -1.5823 20 6 4.7818 -11.0481 -2.9630 21 6 5.4531 -11.9333 -3.7811 22 6 6.3134 -12.8689 -3.2346 23 6 6.5116 -12.9193 -1.8662 24 6 5.8511 -12.0360 -1.0375 25 7 3.3885 -9.1701 -1.1024 26 1 3.1241 -8.9902 -2.0182 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5570 -0.8898 29 1 0.6241 -2.5567 0.8902 30 1 3.1568 -3.4354 0.0009 31 1 3.3591 -5.9711 0.8911 32 1 3.3605 -5.9708 -0.8888 33 1 1.3425 -7.4112 -0.8915 34 1 1.3406 -7.4119 0.8885 35 1 3.3805 -8.7263 2.1141 36 1 4.9825 -10.7097 1.2835 37 1 4.1066 -10.3217 -3.3903 38 1 5.3029 -11.8989 -4.8500 39 1 6.8328 -13.5627 -3.8789 40 1 7.1848 -13.6517 -1.4459 41 1 6.0069 -12.0761 0.0305 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340459708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:07 Heat of formation + Delta-G solvation = -10.963953 kcal Electronic energy + Delta-G solvation = -21711.542426 eV Core-core repulsion = 18362.026512 eV Total energy + Delta-G solvation = -3349.515915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22098 -40.50757 -39.63040 -36.20266 -34.75513 -34.32353 -32.45376 -32.36896 -31.42637 -29.78943 -28.23081 -25.68502 -24.16749 -23.64389 -22.89505 -21.35129 -21.25927 -20.69183 -19.02112 -18.65219 -17.51291 -17.06940 -16.82414 -16.67239 -16.10606 -15.85028 -15.61717 -15.29823 -14.88359 -14.69119 -14.57330 -14.22274 -14.07912 -13.94743 -13.69723 -13.58677 -13.39532 -13.11808 -12.83143 -12.74889 -12.69611 -12.23216 -12.14666 -11.98777 -11.87720 -11.49297 -10.81077 -10.80065 -10.31964 -9.87462 -9.82912 -9.81310 -8.44797 -8.29885 -6.46576 0.03751 0.49110 1.42517 1.44911 1.45700 1.56309 1.77579 2.06546 2.23188 2.34171 2.66010 3.01879 3.04767 3.75190 3.79066 3.96828 4.03854 4.08872 4.09684 4.29847 4.36936 4.50276 4.55492 4.59738 4.64118 4.71078 4.90900 4.98423 5.11343 5.12706 5.14593 5.23595 5.23948 5.33814 5.48792 5.54520 5.61948 5.62916 5.69193 5.84662 6.06098 6.08108 6.17276 6.64073 6.64790 6.90912 7.22830 7.49804 8.82116 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.028319 B = 0.002093 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.505944 B =13377.560932 C =13727.706319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.264 3.736 10 N -0.709 5.709 11 C 0.494 3.506 12 O -0.604 6.604 13 C -0.116 4.116 14 C -0.029 4.029 15 C 0.032 3.968 16 C -0.204 4.204 17 C -0.182 4.182 18 C 0.037 3.963 19 C -0.029 4.029 20 C -0.139 4.139 21 C -0.121 4.121 22 C -0.130 4.130 23 C -0.117 4.117 24 C -0.117 4.117 25 N -0.546 5.546 26 H 0.419 0.581 27 H 0.269 0.731 28 H -0.013 1.013 29 H -0.012 1.012 30 H 0.409 0.591 31 H 0.117 0.883 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.210 -25.821 -4.366 30.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.141 3.859 10 N -0.359 5.359 11 C 0.282 3.718 12 O -0.486 6.486 13 C -0.156 4.156 14 C -0.067 4.067 15 C -0.082 4.082 16 C -0.229 4.229 17 C -0.207 4.207 18 C -0.074 4.074 19 C -0.029 4.029 20 C -0.158 4.158 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.135 4.135 24 C -0.135 4.135 25 N -0.142 5.142 26 H 0.258 0.742 27 H 0.077 0.923 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.244 0.756 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.164 0.836 36 H 0.170 0.830 37 H 0.140 0.860 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.168 -25.807 -4.511 30.272 hybrid contribution -0.143 1.287 -0.383 1.350 sum 15.025 -24.520 -4.893 29.171 Atomic orbital electron populations 1.70138 1.08246 1.28557 1.49976 1.26082 0.95808 1.03953 0.93892 0.85151 0.78487 0.76955 0.78588 1.19607 1.20952 1.17937 1.21633 0.94314 0.90651 1.52849 0.89841 1.18544 0.88770 0.84461 0.94085 1.46252 1.11202 1.05723 1.72728 1.21523 0.89858 0.85066 0.75337 1.90643 1.19558 1.85619 1.52807 1.21604 0.97193 0.90326 1.06519 1.19726 0.94401 0.88410 1.04197 1.20310 1.02519 0.98626 0.86703 1.20892 1.02917 1.00610 0.98452 1.21146 1.04544 1.02202 0.92782 1.18921 0.99216 0.95602 0.93692 1.18258 0.97260 0.95160 0.92261 1.21312 1.01203 1.00608 0.92668 1.21336 0.96568 0.95234 1.00699 1.21572 0.98557 0.98973 0.95722 1.21417 0.99417 0.98877 0.93767 1.21339 0.96295 0.94832 1.01058 1.42006 1.35615 1.27460 1.09129 0.74229 0.92255 0.99499 0.99421 0.75569 0.86443 0.87223 0.91273 0.89707 0.83584 0.83022 0.86015 0.84154 0.83757 0.83441 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.56 -30.33 9.28 25.60 0.24 -30.10 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.26 14.54 5.43 85.63 0.46 15.01 16 10 N -0.71 -29.69 5.55 -466.79 -2.59 -32.28 16 11 C 0.49 19.18 7.83 87.66 0.69 19.86 16 12 O -0.60 -29.24 15.98 -3.05 -0.05 -29.29 16 13 C -0.12 -2.96 5.68 29.85 0.17 -2.79 16 14 C -0.03 -0.71 5.04 29.85 0.15 -0.56 16 15 C 0.03 0.72 6.41 41.13 0.26 0.99 16 16 C -0.20 -4.50 10.73 22.07 0.24 -4.27 16 17 C -0.18 -3.76 10.23 22.34 0.23 -3.54 16 18 C 0.04 0.77 6.92 40.40 0.28 1.05 16 19 C -0.03 -0.52 5.87 -20.09 -0.12 -0.64 16 20 C -0.14 -2.27 9.71 22.53 0.22 -2.05 16 21 C -0.12 -1.61 10.03 22.23 0.22 -1.39 16 22 C -0.13 -1.53 10.04 22.33 0.22 -1.31 16 23 C -0.12 -1.43 10.03 22.24 0.22 -1.21 16 24 C -0.12 -1.79 9.56 22.53 0.22 -1.58 16 25 N -0.55 -10.93 5.99 -172.15 -1.03 -11.96 16 26 H 0.42 6.74 8.08 -92.71 -0.75 5.99 16 27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 28 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.41 14.06 8.32 -92.71 -0.77 13.29 16 31 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 34 H 0.08 2.29 8.10 -2.39 -0.02 2.27 16 35 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 36 H 0.15 2.49 7.26 -2.91 -0.02 2.47 16 37 H 0.12 1.68 7.18 -2.91 -0.02 1.66 16 38 H 0.14 1.28 8.06 -2.91 -0.02 1.25 16 39 H 0.14 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.14 1.71 7.00 -2.91 -0.02 1.69 16 Total: -1.00 -73.95 354.65 2.34 -71.61 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.46 Total: 25.46 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.17 Total: -11.93 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.34 Total: -100.22 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.05 Total: -29.29 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.95 2.34 -71.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340459708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.647 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds