Wall clock time and date at job start Fri Apr 10 2020 20:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48496 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47019 * 300.00347 * 3 2 1 6 6 H 1.48496 * 109.46733 * 60.00394 * 3 2 1 7 7 C 1.37883 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46892 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46731 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46625 * 180.02562 * 11 10 9 13 13 C 1.39947 * 119.99867 * 180.02562 * 12 11 10 14 14 C 1.38968 * 120.50486 * 359.96809 * 13 12 11 15 15 C 1.38761 * 118.42058 * 180.02562 * 14 13 12 16 16 C 1.38070 * 119.34913 * 0.02562 * 15 14 13 17 17 N 1.32003 * 120.97872 * 359.74578 * 16 15 14 18 18 C 1.32152 * 121.72153 * 0.52373 * 17 16 15 19 19 O 1.35765 * 119.72756 * 179.75351 * 18 17 16 20 20 C 1.35882 * 118.00205 * 5.63297 * 19 18 17 21 21 C 1.38760 * 120.05812 * 70.52373 * 20 19 18 22 22 C 1.38139 * 119.94045 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05753 * 359.97438 * 22 21 20 24 24 C 1.38269 * 120.11968 * 0.29889 * 23 22 21 25 25 C 1.38139 * 120.05733 * 359.44976 * 24 23 22 26 26 H 0.96993 * 119.99670 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46842 * 60.00325 * 9 7 2 28 28 H 1.09008 * 109.46962 * 300.00341 * 9 7 2 29 29 H 1.08999 * 109.47351 * 60.00344 * 10 9 7 30 30 H 1.09001 * 109.47540 * 300.00101 * 10 9 7 31 31 H 1.08996 * 109.47135 * 60.00574 * 11 10 9 32 32 H 1.09000 * 109.46948 * 299.99429 * 11 10 9 33 33 H 0.96996 * 120.00561 * 359.97438 * 12 11 10 34 34 H 1.07995 * 120.79493 * 0.02562 * 14 13 12 35 35 H 1.08000 * 120.32274 * 180.02562 * 15 14 13 36 36 H 1.07997 * 119.50771 * 179.97438 * 16 15 14 37 37 H 1.07996 * 120.02959 * 359.95264 * 21 20 19 38 38 H 1.07994 * 119.96845 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.93894 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.97468 * 179.73113 * 24 23 22 41 41 H 1.07998 * 120.03379 * 180.25644 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1006 0.0007 13 6 1.9658 -7.4201 0.0008 14 6 0.6018 -7.6861 0.0010 15 6 0.1871 -9.0103 0.0017 16 6 1.1334 -10.0157 0.0027 17 7 2.4232 -9.7348 -0.0020 18 6 2.8630 -8.4886 0.0024 19 8 4.1988 -8.2461 0.0024 20 6 5.0397 -9.3064 -0.1201 21 6 5.1347 -9.9822 -1.3283 22 6 5.9907 -11.0595 -1.4502 23 6 6.7529 -11.4641 -0.3699 24 6 6.6560 -10.7960 0.8367 25 6 5.8054 -9.7149 0.9626 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8895 30 1 2.8720 -3.6044 -0.8905 31 1 0.8533 -5.0451 -0.8897 32 1 0.8539 -5.0446 0.8904 33 1 3.3859 -5.9234 0.0003 34 1 -0.1185 -6.8813 0.0007 35 1 -0.8655 -9.2521 0.0014 36 1 0.8136 -11.0472 0.0036 37 1 4.5396 -9.6665 -2.1724 38 1 6.0653 -11.5855 -2.3904 39 1 7.4219 -12.3064 -0.4675 40 1 7.2493 -11.1168 1.6803 41 1 5.7331 -9.1907 1.9041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:38 Heat of formation + Delta-G solvation = 23.783243 kcal Electronic energy + Delta-G solvation = -22381.109044 eV Core-core repulsion = 19033.099880 eV Total energy + Delta-G solvation = -3348.009163 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06445 -39.42492 -37.51749 -36.51650 -33.78723 -31.96033 -31.52699 -31.13851 -30.16856 -28.84237 -26.37589 -24.45502 -23.31059 -22.84816 -22.27618 -21.58447 -20.42875 -18.90327 -17.68636 -16.72733 -16.54700 -16.21624 -16.17445 -15.47743 -14.96095 -14.86316 -14.53230 -14.23363 -14.15069 -13.87994 -13.63340 -13.25345 -12.75333 -12.45651 -12.29033 -12.24683 -12.13373 -11.82421 -11.76443 -11.05139 -11.00884 -10.75300 -10.57879 -10.48988 -9.81279 -9.74762 -9.45927 -9.26988 -9.15376 -9.14496 -8.79742 -8.41136 -7.22981 -6.06007 -4.08570 0.95706 1.18331 1.28735 1.42964 2.91793 3.27942 3.35600 3.39500 3.52874 3.71349 3.86230 4.41809 4.46680 4.71465 4.72221 4.83487 4.89707 5.05899 5.13939 5.18844 5.30321 5.33922 5.42496 5.56414 5.63519 5.66393 5.78402 5.91221 6.03977 6.15168 6.20622 6.26326 6.28193 6.40284 6.53699 6.54609 6.69172 6.93594 7.22639 7.50727 7.58320 7.70298 7.83261 7.92812 7.96985 8.34726 8.98125 9.56024 11.05398 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.002708 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.539341 B =10337.727258 C =11502.631023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.120 3.880 12 N -0.730 5.730 13 C 0.179 3.821 14 C -0.142 4.142 15 C -0.145 4.145 16 C 0.056 3.944 17 N -0.489 5.489 18 C 0.237 3.763 19 O -0.256 6.256 20 C 0.111 3.889 21 C -0.119 4.119 22 C -0.107 4.107 23 C -0.125 4.125 24 C -0.108 4.108 25 C -0.121 4.121 26 H 0.261 0.739 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.406 0.594 34 H 0.143 0.857 35 H 0.135 0.865 36 H 0.152 0.848 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.136 -24.176 -0.427 25.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.358 5.358 13 C 0.071 3.929 14 C -0.172 4.172 15 C -0.165 4.165 16 C -0.101 4.101 17 N -0.210 5.210 18 C 0.053 3.947 19 O -0.163 6.163 20 C 0.068 3.932 21 C -0.137 4.137 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.126 4.126 25 C -0.139 4.139 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.241 0.759 34 H 0.161 0.839 35 H 0.153 0.847 36 H 0.170 0.830 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.557 -24.316 -0.415 25.467 hybrid contribution 0.074 1.573 -0.029 1.575 sum 7.631 -22.744 -0.444 23.994 Atomic orbital electron populations 1.69965 1.06059 1.26612 1.50763 1.25026 0.94869 0.99339 0.95228 0.86523 0.80119 0.83684 0.77620 1.19719 1.20972 1.20967 1.21246 0.93091 0.90915 1.50721 0.92581 1.19032 0.93809 0.90948 0.97499 1.21852 0.99796 0.93063 1.01116 1.21685 0.92163 0.85787 1.00725 1.44985 1.09639 1.01303 1.79907 1.17950 0.91918 0.84701 0.98365 1.21014 0.92774 0.97865 1.05596 1.21799 1.00980 0.92563 1.01204 1.21986 0.86357 0.99543 1.02206 1.67122 1.19301 1.19163 1.15409 1.19281 0.82953 0.88819 1.03611 1.84488 1.12331 1.31520 1.87952 1.18508 0.92198 0.89101 0.93362 1.21323 0.99381 0.95889 0.97125 1.20987 0.96122 0.96399 0.99035 1.21169 0.99725 1.00232 0.93227 1.20984 0.98524 0.95182 0.97911 1.21156 0.98297 0.96803 0.97646 0.92978 0.96329 0.96332 0.92651 0.92656 0.92359 0.92347 0.75883 0.83923 0.84749 0.83035 0.85905 0.85693 0.85849 0.85504 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.49 16 11 C 0.12 1.95 4.95 -4.04 -0.02 1.93 16 12 N -0.73 -10.98 5.73 -58.37 -0.33 -11.32 16 13 C 0.18 2.62 6.69 -83.40 -0.56 2.06 16 14 C -0.14 -1.83 9.42 -39.12 -0.37 -2.20 16 15 C -0.14 -1.58 10.10 -39.45 -0.40 -1.98 16 16 C 0.06 0.65 11.17 -17.54 -0.20 0.45 16 17 N -0.49 -6.85 9.03 -13.16 -0.12 -6.97 16 18 C 0.24 3.50 7.35 -16.93 -0.12 3.38 16 19 O -0.26 -3.77 9.24 -3.14 -0.03 -3.80 16 20 C 0.11 1.46 5.24 -39.20 -0.21 1.25 16 21 C -0.12 -1.41 9.43 -39.42 -0.37 -1.78 16 22 C -0.11 -1.03 10.04 -39.61 -0.40 -1.43 16 23 C -0.13 -1.10 10.04 -39.56 -0.40 -1.49 16 24 C -0.11 -1.00 10.04 -39.61 -0.40 -1.40 16 25 C -0.12 -1.38 9.99 -39.42 -0.39 -1.78 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 32 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 33 H 0.41 6.01 7.86 -40.82 -0.32 5.69 16 34 H 0.14 1.72 6.88 -52.49 -0.36 1.36 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 353.17 15.07 5.32 5.32 Total: -1.00 -31.12 353.17 -9.67 -40.79 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.70 Total: 3.60 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -4.52 Total: -18.29 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.28 Total: -44.04 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.03 Total: -3.80 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.12 -9.67 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.568 kcal (2) G-P(sol) polarization free energy of solvation -31.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds