Wall clock time and date at job start Fri Apr 10 2020 20:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48496 * 109.47234 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47019 * 300.00347 * 3 2 1 6 6 H 1.48496 * 109.46733 * 60.00394 * 3 2 1 7 7 C 1.37883 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99952 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46892 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46731 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46625 * 180.02562 * 11 10 9 13 13 C 1.39947 * 119.99867 * 180.02562 * 12 11 10 14 14 C 1.38968 * 120.50486 * 359.96809 * 13 12 11 15 15 C 1.38761 * 118.42058 * 180.02562 * 14 13 12 16 16 C 1.38070 * 119.34913 * 0.02562 * 15 14 13 17 17 N 1.32003 * 120.97872 * 359.74578 * 16 15 14 18 18 C 1.32152 * 121.72153 * 0.52373 * 17 16 15 19 19 O 1.35765 * 119.72756 * 179.75351 * 18 17 16 20 20 C 1.35882 * 118.00205 * 5.63297 * 19 18 17 21 21 C 1.38760 * 120.05812 * 70.52373 * 20 19 18 22 22 C 1.38139 * 119.94045 * 179.97438 * 21 20 19 23 23 C 1.38266 * 120.05753 * 359.97438 * 22 21 20 24 24 C 1.38269 * 120.11968 * 0.29889 * 23 22 21 25 25 C 1.38139 * 120.05733 * 359.44976 * 24 23 22 26 26 H 0.96993 * 119.99670 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.46842 * 60.00325 * 9 7 2 28 28 H 1.09008 * 109.46962 * 300.00341 * 9 7 2 29 29 H 1.08999 * 109.47351 * 60.00344 * 10 9 7 30 30 H 1.09001 * 109.47540 * 300.00101 * 10 9 7 31 31 H 1.08996 * 109.47135 * 60.00574 * 11 10 9 32 32 H 1.09000 * 109.46948 * 299.99429 * 11 10 9 33 33 H 0.96996 * 120.00561 * 359.97438 * 12 11 10 34 34 H 1.07995 * 120.79493 * 0.02562 * 14 13 12 35 35 H 1.08000 * 120.32274 * 180.02562 * 15 14 13 36 36 H 1.07997 * 119.50771 * 179.97438 * 16 15 14 37 37 H 1.07996 * 120.02959 * 359.95264 * 21 20 19 38 38 H 1.07994 * 119.96845 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.93894 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.97468 * 179.73113 * 24 23 22 41 41 H 1.07998 * 120.03379 * 180.25644 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 7 2.4322 -6.1006 0.0007 13 6 1.9658 -7.4201 0.0008 14 6 0.6018 -7.6861 0.0010 15 6 0.1871 -9.0103 0.0017 16 6 1.1334 -10.0157 0.0027 17 7 2.4232 -9.7348 -0.0020 18 6 2.8630 -8.4886 0.0024 19 8 4.1988 -8.2461 0.0024 20 6 5.0397 -9.3064 -0.1201 21 6 5.1347 -9.9822 -1.3283 22 6 5.9907 -11.0595 -1.4502 23 6 6.7529 -11.4641 -0.3699 24 6 6.6560 -10.7960 0.8367 25 6 5.8054 -9.7149 0.9626 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8897 29 1 2.8719 -3.6044 0.8895 30 1 2.8720 -3.6044 -0.8905 31 1 0.8533 -5.0451 -0.8897 32 1 0.8539 -5.0446 0.8904 33 1 3.3859 -5.9234 0.0003 34 1 -0.1185 -6.8813 0.0007 35 1 -0.8655 -9.2521 0.0014 36 1 0.8136 -11.0472 0.0036 37 1 4.5396 -9.6665 -2.1724 38 1 6.0653 -11.5855 -2.3904 39 1 7.4219 -12.3064 -0.4675 40 1 7.2493 -11.1168 1.6803 41 1 5.7331 -9.1907 1.9041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:37 Heat of formation + Delta-G solvation = 5.509878 kcal Electronic energy + Delta-G solvation = -22381.901436 eV Core-core repulsion = 19033.099880 eV Total energy + Delta-G solvation = -3348.801556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02779 -40.32054 -38.39908 -37.79381 -35.61428 -33.62115 -32.55603 -31.91862 -31.19957 -30.04177 -27.99103 -25.66441 -24.67928 -23.67270 -23.26553 -22.76171 -21.99860 -19.83051 -18.79739 -18.47965 -17.53521 -17.36444 -17.13643 -16.52201 -16.42580 -16.32607 -15.77803 -15.30654 -15.20961 -14.82917 -14.47076 -14.39162 -14.13109 -13.91571 -13.65411 -13.54963 -13.23139 -13.07204 -12.85009 -12.55442 -12.53390 -12.32535 -11.97452 -11.84520 -11.52334 -11.35375 -11.21037 -10.62519 -10.57343 -10.23095 -9.93482 -9.63581 -8.32190 -8.22267 -6.32661 0.11538 0.33778 0.39109 0.43763 1.39099 1.39772 1.52644 2.03341 2.32677 2.42832 2.86286 2.91496 3.11566 3.54465 3.85998 3.95947 3.98151 4.10067 4.12578 4.20522 4.22880 4.24535 4.48041 4.50547 4.57187 4.58094 4.79662 4.93893 4.96760 4.98568 5.04086 5.13297 5.26502 5.40868 5.45585 5.48080 5.53146 5.56112 5.69795 5.82187 5.84349 6.10872 6.24089 6.50981 6.68811 6.83863 6.98627 7.36570 8.89709 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.002708 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.539341 B =10337.727258 C =11502.631023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.105 4.105 11 C 0.137 3.863 12 N -0.735 5.735 13 C 0.156 3.844 14 C -0.147 4.147 15 C -0.136 4.136 16 C 0.056 3.944 17 N -0.504 5.504 18 C 0.221 3.779 19 O -0.272 6.272 20 C 0.080 3.920 21 C -0.136 4.136 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.106 4.106 25 C -0.138 4.138 26 H 0.264 0.736 27 H -0.002 1.002 28 H -0.002 1.002 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.404 0.596 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.184 0.816 37 H 0.113 0.887 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.010 -26.014 -0.420 27.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.143 4.143 11 C 0.013 3.987 12 N -0.364 5.364 13 C 0.049 3.951 14 C -0.177 4.177 15 C -0.156 4.156 16 C -0.100 4.100 17 N -0.225 5.225 18 C 0.039 3.961 19 O -0.179 6.179 20 C 0.038 3.962 21 C -0.154 4.154 22 C -0.125 4.125 23 C -0.138 4.138 24 C -0.124 4.124 25 C -0.156 4.156 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.239 0.761 34 H 0.166 0.834 35 H 0.188 0.812 36 H 0.201 0.799 37 H 0.131 0.869 38 H 0.167 0.833 39 H 0.175 0.825 40 H 0.172 0.828 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.443 -26.183 -0.408 27.513 hybrid contribution -0.225 1.986 -0.033 1.999 sum 8.218 -24.197 -0.441 25.558 Atomic orbital electron populations 1.70083 1.07656 1.27753 1.51619 1.25943 0.95787 1.03249 0.94750 0.85425 0.79034 0.78933 0.77823 1.18791 1.20344 1.20328 1.21696 0.93511 0.92399 1.50566 0.92366 1.18911 0.94225 0.92358 0.95456 1.21570 0.98639 0.92927 1.01155 1.21327 0.91768 0.84717 1.00862 1.44736 1.09156 1.01310 1.81227 1.18138 0.92783 0.84241 0.99966 1.21300 0.92201 0.99201 1.05014 1.22172 1.02716 0.91359 0.99390 1.22649 0.85723 1.01308 1.00356 1.67186 1.20576 1.18843 1.15929 1.19432 0.83220 0.89174 1.04264 1.84455 1.12619 1.32693 1.88141 1.18853 0.92931 0.89804 0.94567 1.21382 1.00496 0.97038 0.96507 1.21327 0.95226 0.95476 1.00515 1.21592 0.99267 1.00571 0.92386 1.21358 0.97741 0.94018 0.99233 1.21332 0.99092 0.97909 0.97317 0.92706 0.98336 0.98338 0.92564 0.92584 0.92252 0.92247 0.76069 0.83363 0.81219 0.79927 0.86906 0.83273 0.82494 0.82752 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.54 -30.70 9.11 25.60 0.23 -30.46 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.10 -4.18 5.27 30.59 0.16 -4.02 16 11 C 0.14 4.55 4.95 86.38 0.43 4.98 16 12 N -0.73 -22.71 5.73 -338.59 -1.94 -24.65 16 13 C 0.16 4.61 6.69 38.33 0.26 4.86 16 14 C -0.15 -3.67 9.42 22.57 0.21 -3.46 16 15 C -0.14 -2.69 10.10 22.36 0.23 -2.46 16 16 C 0.06 1.20 11.17 84.63 0.95 2.15 16 17 N -0.50 -13.94 9.03 -308.42 -2.79 -16.73 16 18 C 0.22 6.70 7.35 84.96 0.62 7.32 16 19 O -0.27 -8.40 9.24 -34.16 -0.32 -8.72 16 20 C 0.08 2.18 5.24 22.52 0.12 2.30 16 21 C -0.14 -3.24 9.43 22.37 0.21 -3.03 16 22 C -0.11 -1.89 10.04 22.25 0.22 -1.66 16 23 C -0.12 -1.78 10.04 22.28 0.22 -1.56 16 24 C -0.11 -1.77 10.04 22.25 0.22 -1.55 16 25 C -0.14 -3.17 9.99 22.37 0.22 -2.95 16 26 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 27 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.06 1.94 7.99 -2.39 -0.02 1.92 16 32 H 0.06 1.94 7.99 -2.39 -0.02 1.93 16 33 H 0.40 12.50 7.86 -92.71 -0.73 11.77 16 34 H 0.15 3.47 6.88 -2.91 -0.02 3.45 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 37 H 0.11 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -68.54 353.17 2.49 -66.05 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.30 Total: 21.04 kcal Atomic # 6 Polarization: -32.36 SS G_CDS: 4.92 Total: -27.44 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -4.44 Total: -97.09 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.32 Total: -8.72 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -68.54 2.49 -66.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.564 kcal (2) G-P(sol) polarization free energy of solvation -68.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds