Wall clock time and date at job start Fri Apr 10 2020 20:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47206 * 109.52264 * 2 1 4 4 N 2.60801 * 109.52322 * 0.02562 * 2 1 3 5 5 C 1.53038 * 109.50063 * 120.08232 * 2 1 3 6 6 C 1.53038 * 109.53782 * 181.31111 * 5 2 1 7 7 C 1.53183 * 109.31619 * 298.64110 * 6 5 2 8 8 N 1.46926 * 108.78060 * 54.63330 * 7 6 5 9 9 C 1.34775 * 120.63374 * 126.41209 * 8 7 6 10 10 O 1.21552 * 119.99829 * 354.19658 * 9 8 7 11 11 C 1.47885 * 119.99949 * 174.20210 * 9 8 7 12 12 C 1.39916 * 120.02364 * 324.56613 * 11 9 8 13 13 C 1.38333 * 120.35311 * 179.78924 * 12 11 9 14 14 C 1.37749 * 120.41386 * 0.47347 * 13 12 11 15 15 C 1.40747 * 120.04074 * 359.78175 * 14 13 12 16 16 C 1.41438 * 120.17861 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00049 * 330.75583 * 16 15 14 18 18 C 1.39936 * 120.00067 * 150.75094 * 16 15 14 19 19 N 1.30823 * 119.99909 * 349.38450 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 169.37795 * 18 16 15 21 21 H 1.48508 * 109.46819 * 90.00608 * 20 18 16 22 22 H 1.48503 * 109.47003 * 209.99886 * 20 18 16 23 23 H 1.48495 * 109.47303 * 330.00365 * 20 18 16 24 24 C 1.38991 * 120.02406 * 144.84737 * 11 9 8 25 25 C 1.46929 * 118.73594 * 306.39244 * 8 7 6 26 26 H 1.08999 * 109.46823 * 180.08226 * 1 2 3 27 27 H 1.09006 * 109.46663 * 300.07825 * 1 2 3 28 28 H 1.08995 * 109.47478 * 60.07276 * 1 2 3 29 29 H 1.08995 * 109.46248 * 301.33997 * 5 2 1 30 30 H 1.09010 * 109.45662 * 61.29487 * 5 2 1 31 31 H 1.09006 * 109.49784 * 178.68477 * 6 5 2 32 32 H 1.09003 * 109.49250 * 58.59315 * 6 5 2 33 33 H 1.09004 * 109.58524 * 294.84294 * 7 6 5 34 34 H 1.09005 * 109.70447 * 174.49658 * 7 6 5 35 35 H 1.07997 * 119.82300 * 0.02562 * 12 11 9 36 36 H 1.08006 * 119.78680 * 180.25838 * 13 12 11 37 37 H 1.07997 * 119.97752 * 179.76749 * 14 13 12 38 38 H 0.97004 * 120.00055 * 179.97438 * 19 18 16 39 39 H 1.08005 * 120.20250 * 359.97438 * 24 11 9 40 40 H 1.08997 * 109.58913 * 293.82269 * 25 8 7 41 41 H 1.08998 * 109.70330 * 173.46056 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0220 1.3874 0.0000 4 7 2.4016 2.4581 0.0011 5 6 2.0409 -0.7231 1.2483 6 6 3.5709 -0.6951 1.2658 7 6 4.1053 -1.4266 0.0305 8 7 3.5046 -0.8290 -1.1698 9 6 4.2810 -0.3862 -2.1785 10 8 5.4905 -0.3818 -2.0576 11 6 3.6614 0.0943 -3.4324 12 6 2.5015 -0.5179 -3.9195 13 6 1.9138 -0.0711 -5.0894 14 6 2.4688 0.9749 -5.7933 15 6 3.6384 1.5997 -5.3216 16 6 4.2110 2.6735 -6.0423 17 1 4.0913 2.7293 -7.1142 18 6 4.9326 3.6639 -5.3664 19 7 4.9056 3.7160 -4.0595 20 14 5.9345 4.9114 -6.3304 21 1 5.0881 6.0910 -6.6427 22 1 7.1024 5.3408 -5.5199 23 1 6.4094 4.2942 -7.5948 24 6 4.2343 1.1507 -4.1308 25 6 2.0412 -0.7237 -1.2497 26 1 -0.3633 -1.0277 0.0015 27 1 -0.3633 0.5151 0.8894 28 1 -0.3634 0.5127 -0.8906 29 1 1.6583 -0.2246 2.1389 30 1 1.6967 -1.7574 1.2352 31 1 3.9336 -1.1898 2.1669 32 1 3.9159 0.3388 1.2540 33 1 3.8375 -2.4818 0.0865 34 1 5.1898 -1.3268 -0.0152 35 1 2.0604 -1.3412 -3.3773 36 1 1.0161 -0.5477 -5.4549 37 1 2.0062 1.3156 -6.7078 38 1 5.4061 4.4023 -3.5910 39 1 5.1320 1.6235 -3.7606 40 1 1.6052 -1.7215 -1.2981 41 1 1.7615 -0.1591 -2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612364719.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:37:34 Heat of formation + Delta-G solvation = 9.620910 kcal Electronic energy + Delta-G solvation = -24387.863921 eV Core-core repulsion = 21039.240633 eV Total energy + Delta-G solvation = -3348.623288 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.33446 -38.19386 -37.01056 -35.50852 -33.83982 -33.36351 -32.39106 -29.96476 -29.48261 -26.97507 -25.58813 -25.38347 -23.12440 -22.53701 -21.03179 -20.96039 -18.99468 -17.60268 -16.90457 -15.99773 -15.51619 -15.26911 -15.01976 -14.87845 -14.54790 -14.09495 -13.84966 -13.54004 -13.27797 -13.13265 -12.85894 -12.68744 -12.48330 -12.34260 -12.08600 -12.04272 -11.76353 -11.60530 -11.51532 -11.20496 -11.10333 -11.08524 -10.86866 -10.65573 -10.49582 -10.39242 -10.07093 -9.69945 -9.25976 -9.01729 -8.37834 -7.62579 -7.46313 -6.74544 -4.43901 2.24949 2.79610 3.06638 3.08657 3.08715 3.11075 3.14558 3.32192 3.70780 3.93521 3.96925 4.54930 4.59462 4.66839 4.79432 4.92012 5.17765 5.33348 5.40036 5.44571 5.51529 5.57202 5.60546 5.66977 5.74453 5.78501 5.95846 5.98334 6.03694 6.11834 6.16882 6.25055 6.65625 6.83004 6.97341 7.01475 7.20577 7.36289 7.62255 7.72722 7.83505 7.89199 7.97537 8.15473 8.48939 8.78638 8.81428 8.84118 10.19481 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.004951 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.909578 B = 5653.616262 C = 5892.176229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 C 0.208 3.792 4 N -0.416 5.416 5 C -0.105 4.105 6 C -0.140 4.140 7 C 0.111 3.889 8 N -0.618 5.618 9 C 0.573 3.427 10 O -0.545 6.545 11 C -0.127 4.127 12 C -0.223 4.223 13 C -0.099 4.099 14 C -0.208 4.208 15 C 0.102 3.898 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.071 3.929 19 N -0.793 5.793 20 Si 0.913 3.087 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.088 4.088 25 C 0.105 3.895 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.129 0.871 40 H 0.084 0.916 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.505 -9.848 9.489 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 C -0.111 4.111 4 N -0.091 5.091 5 C -0.144 4.144 6 C -0.178 4.178 7 C -0.012 4.012 8 N -0.351 5.351 9 C 0.365 3.635 10 O -0.422 6.422 11 C -0.131 4.131 12 C -0.243 4.243 13 C -0.117 4.117 14 C -0.228 4.228 15 C 0.099 3.901 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.147 4.147 19 N -0.418 5.418 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.109 4.109 25 C -0.019 4.019 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.102 0.898 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.148 -8.058 9.750 14.529 hybrid contribution 0.244 0.304 -0.259 0.468 sum -6.903 -7.755 9.491 14.067 Atomic orbital electron populations 1.21819 0.90875 1.03567 1.03523 1.18774 0.96704 0.84220 0.98711 1.28755 0.93813 0.94485 0.94065 1.81250 1.07813 1.12632 1.07362 1.21638 0.95989 1.00963 0.95797 1.21984 0.95418 1.02013 0.98431 1.21518 1.00076 0.95974 0.83603 1.47935 1.06313 1.62551 1.18349 1.18960 0.86161 0.74985 0.83423 1.90682 1.14529 1.55022 1.81982 1.19434 0.98047 1.00534 0.95037 1.20527 0.99161 1.04380 1.00217 1.20457 0.98661 0.97320 0.95295 1.21156 0.98000 1.01488 1.02181 1.17598 0.89761 0.91303 0.91408 1.19576 1.28640 1.05319 0.95431 0.90133 1.25946 0.95128 0.98671 0.94951 1.69755 1.33033 1.30752 1.08226 0.86236 0.79491 0.80151 0.80429 1.19461 1.20059 1.18414 1.21570 0.99461 0.93973 0.95855 1.22422 0.80508 1.01029 0.97950 0.90325 0.91528 0.91048 0.90922 0.89650 0.90268 0.91605 0.91531 0.89005 0.88129 0.88702 0.88554 0.90586 0.85343 0.89837 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.44 37.16 0.31 -0.82 16 2 C 0.02 0.23 0.72 -157.17 -0.11 0.12 16 3 C 0.21 3.44 12.22 -20.76 -0.25 3.19 16 4 N -0.42 -8.50 18.54 42.15 0.78 -7.72 16 5 C -0.11 -0.94 4.69 -26.69 -0.13 -1.06 16 6 C -0.14 -1.56 5.84 -26.62 -0.16 -1.71 16 7 C 0.11 1.48 6.44 -3.72 -0.02 1.45 16 8 N -0.62 -10.22 2.67 -173.86 -0.46 -10.69 16 9 C 0.57 12.66 7.38 -12.31 -0.09 12.57 16 10 O -0.54 -13.78 16.23 5.32 0.09 -13.70 16 11 C -0.13 -3.00 5.28 -105.04 -0.56 -3.55 16 12 C -0.22 -4.51 7.36 -38.92 -0.29 -4.80 16 13 C -0.10 -2.03 10.01 -39.73 -0.40 -2.43 16 14 C -0.21 -4.89 9.78 -38.81 -0.38 -5.27 16 15 C 0.10 2.71 5.54 -106.87 -0.59 2.12 16 16 C -0.46 -12.28 9.06 -37.73 -0.34 -12.62 16 17 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 18 C 0.07 1.84 5.25 -17.35 -0.09 1.75 16 19 N -0.79 -21.74 10.87 55.55 0.60 -21.14 16 20 Si 0.91 19.40 29.57 -169.99 -5.03 14.37 16 21 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 22 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.09 -2.39 8.21 -38.44 -0.32 -2.70 16 25 C 0.11 1.39 3.42 -3.71 -0.01 1.37 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.94 7.14 -51.93 -0.37 0.57 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.42 7.00 -51.93 -0.36 1.06 16 35 H 0.10 1.66 6.03 -52.49 -0.32 1.35 16 36 H 0.09 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 7.25 8.30 -40.82 -0.34 6.91 16 39 H 0.13 3.82 6.19 -52.48 -0.32 3.49 16 40 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 41 H 0.12 1.96 4.47 -51.93 -0.23 1.73 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -33.01 336.98 -7.74 -40.75 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.38 Total: 5.44 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -3.42 Total: -12.40 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.92 Total: -39.54 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.70 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.01 -7.74 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612364719.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.367 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds