Wall clock time and date at job start Fri Apr 10 2020 20:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38103 * 119.91933 * 2 1 4 4 C 1.38051 * 120.30081 * 180.25929 * 3 2 1 5 5 C 1.39747 * 120.13942 * 359.74247 * 4 3 2 6 6 C 1.43202 * 120.07698 * 179.97438 * 5 4 3 7 7 N 4.80403 * 137.24879 * 0.28701 * 3 1 2 8 8 C 1.39355 * 119.84109 * 359.97438 * 5 4 3 9 9 C 1.39325 * 119.70094 * 0.02562 * 8 5 4 10 10 C 1.47865 * 120.07525 * 179.97438 * 9 8 5 11 11 O 1.21551 * 120.00670 * 235.40720 * 10 9 8 12 12 N 1.34778 * 119.99626 * 55.40253 * 10 9 8 13 13 C 1.46923 * 120.63180 * 356.01968 * 12 10 9 14 14 C 1.53194 * 108.77887 * 126.38335 * 13 12 10 15 15 C 1.53048 * 109.30810 * 54.63456 * 14 13 12 16 16 C 1.53035 * 109.54059 * 298.63307 * 15 14 13 17 17 H 1.08998 * 109.50236 * 301.38646 * 16 15 14 18 18 C 1.50695 * 109.49774 * 181.31469 * 16 15 14 19 19 H 1.07996 * 120.00468 * 0.07009 * 18 16 15 20 20 C 1.37885 * 119.99818 * 179.79019 * 18 16 15 21 21 N 1.31513 * 119.99765 * 0.27785 * 20 18 16 22 22 Si 1.86799 * 119.99921 * 180.28023 * 20 18 16 23 23 H 1.48498 * 109.47257 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47297 * 119.99879 * 22 20 18 25 25 H 1.48501 * 109.46959 * 240.00240 * 22 20 18 26 26 C 1.46931 * 120.60315 * 175.98978 * 12 10 9 27 27 H 1.09002 * 109.46735 * 274.50919 * 1 2 3 28 28 H 1.09000 * 109.47187 * 34.50858 * 1 2 3 29 29 H 1.08993 * 109.47025 * 154.51400 * 1 2 3 30 30 H 1.07996 * 119.85213 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.92674 * 179.76766 * 4 3 2 32 32 H 1.07996 * 120.15064 * 180.02562 * 8 5 4 33 33 H 1.09001 * 109.58458 * 6.60037 * 13 12 10 34 34 H 1.08995 * 109.58845 * 246.17303 * 13 12 10 35 35 H 1.09000 * 109.49904 * 294.68672 * 14 13 12 36 36 H 1.09001 * 109.50133 * 174.58150 * 14 13 12 37 37 H 1.09000 * 109.45697 * 178.61093 * 15 14 13 38 38 H 1.08998 * 109.45036 * 58.65293 * 15 14 13 39 39 H 0.97006 * 119.99413 * 180.02562 * 21 20 18 40 40 H 1.09001 * 109.56329 * 113.81571 * 26 12 10 41 41 H 1.08994 * 109.62084 * 353.38776 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.1970 0.0000 4 6 3.5764 1.2062 -0.0054 5 6 4.2861 0.0023 -0.0055 6 6 5.7180 0.0134 -0.0116 7 7 6.8540 0.0221 -0.0163 8 6 3.5970 -1.2089 0.0005 9 6 2.2037 -1.2104 0.0059 10 6 1.4641 -2.4908 0.0116 11 8 0.6393 -2.7202 -0.8512 12 7 1.7048 -3.4036 0.9736 13 6 2.7591 -3.1790 1.9719 14 6 2.1534 -3.3283 3.3710 15 6 1.4633 -4.6899 3.4811 16 6 0.3324 -4.7752 2.4536 17 1 -0.3805 -3.9696 2.6294 18 6 -0.3671 -6.1035 2.5845 19 1 -0.0390 -6.8157 3.3271 20 6 -1.4297 -6.4073 1.7601 21 7 -1.8292 -5.5400 0.8558 22 14 -2.3017 -8.0507 1.9276 23 1 -1.6639 -8.8414 3.0108 24 1 -3.7312 -7.8212 2.2577 25 1 -2.2028 -8.7964 0.6472 26 6 0.9169 -4.6418 1.0437 27 1 -0.3633 0.0808 1.0245 28 1 -0.3633 0.8468 -0.5822 29 1 -0.3633 -0.9276 -0.4422 30 1 1.6522 2.1301 -0.0004 31 1 4.1089 2.1457 -0.0092 32 1 4.1404 -2.1422 0.0009 33 1 3.1650 -2.1742 1.8548 34 1 3.5526 -3.9139 1.8370 35 1 1.4236 -2.5360 3.5379 36 1 2.9434 -3.2594 4.1188 37 1 1.0527 -4.8089 4.4838 38 1 2.1884 -5.4808 3.2896 39 1 -2.5770 -5.7537 0.2760 40 1 1.5600 -5.4962 0.8326 41 1 0.1074 -4.6024 0.3149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824748310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:39:42 Heat of formation + Delta-G solvation = 11.531386 kcal Electronic energy + Delta-G solvation = -23964.421998 eV Core-core repulsion = 20615.881554 eV Total energy + Delta-G solvation = -3348.540444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -40.49957 -38.68720 -36.92952 -36.44189 -33.57403 -32.95976 -32.02231 -31.28341 -29.71787 -27.77963 -25.24602 -25.08968 -23.15349 -22.56545 -21.83416 -20.56925 -19.14251 -17.81511 -16.77275 -16.17705 -15.96996 -15.66542 -15.27830 -14.66075 -14.30590 -14.22228 -14.04056 -13.73133 -13.55067 -13.43079 -13.14216 -13.04291 -12.76229 -12.65084 -12.27999 -12.14204 -11.88325 -11.83129 -11.59507 -11.48134 -11.04029 -10.94308 -10.53151 -10.43954 -10.28153 -9.94673 -9.47152 -9.22447 -9.09376 -8.92110 -8.85663 -8.48178 -7.83868 -6.04740 -4.12866 0.52591 0.91793 2.45822 2.63026 3.13535 3.27606 3.36457 3.39207 3.51685 3.61243 3.80796 4.39573 4.55150 4.57630 4.70613 4.90737 5.12691 5.25312 5.27931 5.37910 5.45795 5.54186 5.61191 5.68499 5.75782 5.89624 5.94362 5.97410 6.12226 6.17510 6.26562 6.41174 6.54476 6.57967 6.62509 6.80717 6.92076 7.07696 7.18347 7.27877 7.58246 7.81205 7.93688 8.14129 8.33356 8.70175 8.91504 9.53177 11.00809 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.022033 B = 0.004142 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.509767 B = 6758.674163 C = 7401.808402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.004 4.004 3 C -0.127 4.127 4 C -0.055 4.055 5 C -0.046 4.046 6 C 0.260 3.740 7 N -0.422 5.422 8 C -0.040 4.040 9 C -0.117 4.117 10 C 0.550 3.450 11 O -0.525 6.525 12 N -0.595 5.595 13 C 0.100 3.900 14 C -0.133 4.133 15 C -0.111 4.111 16 C 0.040 3.960 17 H 0.030 0.970 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.112 3.888 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 13.069 0.327 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.005 4.005 3 C -0.145 4.145 4 C -0.075 4.075 5 C -0.050 4.050 6 C -0.055 4.055 7 N -0.097 5.097 8 C -0.061 4.061 9 C -0.120 4.120 10 C 0.336 3.664 11 O -0.403 6.403 12 N -0.326 5.326 13 C -0.024 4.024 14 C -0.171 4.171 15 C -0.149 4.149 16 C 0.021 3.979 17 H 0.048 0.952 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.140 4.140 21 N -0.518 5.518 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.008 4.008 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.149 12.937 -0.278 15.848 hybrid contribution -0.783 -0.890 0.151 1.195 sum 8.366 12.047 -0.127 14.668 Atomic orbital electron populations 1.21192 0.89811 1.05582 1.03260 1.20227 0.97184 0.91282 0.91849 1.20943 0.93378 0.97924 1.02231 1.21229 0.94174 0.96554 0.95583 1.15786 0.84307 0.94677 1.10209 1.25640 0.92539 0.93796 0.93524 1.81254 1.11993 1.07236 1.09253 1.21299 0.92946 0.97183 0.94647 1.19981 0.93115 0.94728 1.04169 1.18122 0.82833 0.82939 0.82462 1.90791 1.34511 1.78064 1.36911 1.48514 1.35384 1.21240 1.27502 1.21876 0.90277 1.00998 0.89230 1.21940 0.99866 1.00118 0.95199 1.21638 0.98694 0.94045 1.00536 1.18974 0.91956 0.97673 0.89280 0.95229 1.21114 1.14687 1.01332 1.18772 0.92289 1.25042 0.96800 0.96930 0.95187 1.69880 1.26950 1.34534 1.20467 0.86539 0.79514 0.84009 0.77975 1.19799 1.21000 1.20957 1.22375 0.94499 0.80417 1.03480 0.90288 0.90876 0.88274 0.84371 0.84778 0.84447 0.90631 0.91785 0.92062 0.92161 0.92943 0.93146 0.92680 0.93721 0.85795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.67 36.01 0.35 -1.43 16 2 C 0.00 -0.05 5.92 -104.14 -0.62 -0.66 16 3 C -0.13 -1.11 9.68 -39.70 -0.38 -1.50 16 4 C -0.05 -0.45 9.75 -39.09 -0.38 -0.84 16 5 C -0.05 -0.47 5.73 -106.99 -0.61 -1.08 16 6 C 0.26 2.94 15.32 -22.47 -0.34 2.59 16 7 N -0.42 -5.63 18.54 41.84 0.78 -4.85 16 8 C -0.04 -0.46 7.16 -38.76 -0.28 -0.74 16 9 C -0.12 -1.63 4.83 -105.02 -0.51 -2.14 16 10 C 0.55 10.20 6.52 -12.32 -0.08 10.12 16 11 O -0.53 -11.81 14.55 5.32 0.08 -11.73 16 12 N -0.59 -11.13 2.97 -173.87 -0.52 -11.65 16 13 C 0.10 1.47 5.58 -3.71 -0.02 1.45 16 14 C -0.13 -2.03 6.08 -26.61 -0.16 -2.20 16 15 C -0.11 -2.11 5.11 -26.69 -0.14 -2.25 16 16 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 17 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.52 -13.61 8.56 -34.44 -0.29 -13.90 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 21 N -0.88 -24.69 11.40 55.43 0.63 -24.06 16 22 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.11 2.57 5.39 -3.70 -0.02 2.55 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.72 8.11 -51.93 -0.42 0.29 16 29 H 0.10 1.63 5.56 -51.93 -0.29 1.34 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.14 1.51 7.47 -52.49 -0.39 1.12 16 33 H 0.08 0.94 4.81 -51.93 -0.25 0.69 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.12 3.33 5.16 -51.93 -0.27 3.06 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -30.25 339.60 -8.11 -38.36 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.39 Total: 0.80 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.79 Total: -7.69 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.89 Total: -40.56 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.25 -8.11 -38.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824748310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.896 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds