Wall clock time and date at job start Fri Apr 10 2020 20:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36345 * 119.96140 * 2 1 4 4 C 1.38868 * 121.06029 * 179.71896 * 3 2 1 5 5 C 1.38746 * 120.72412 * 0.56317 * 4 3 2 6 6 C 1.47434 * 120.33544 * 179.74494 * 5 4 3 7 7 O 1.21602 * 119.99882 * 205.09721 * 6 5 4 8 8 N 1.34773 * 119.99946 * 25.09373 * 6 5 4 9 9 C 1.46505 * 120.00190 * 2.37144 * 8 6 5 10 10 C 1.46502 * 119.99957 * 182.37698 * 8 6 5 11 11 H 1.08996 * 109.47187 * 359.97438 * 10 8 6 12 12 C 1.53006 * 109.46755 * 239.99832 * 10 8 6 13 13 C 1.50703 * 109.47239 * 120.00234 * 10 8 6 14 14 H 1.07999 * 120.00070 * 35.35090 * 13 10 8 15 15 C 1.37878 * 119.99903 * 215.35829 * 13 10 8 16 16 N 1.31509 * 120.00496 * 185.42293 * 15 13 10 17 17 Si 1.86804 * 119.99613 * 5.42189 * 15 13 10 18 18 H 1.48500 * 109.47084 * 85.25192 * 17 15 13 19 19 H 1.48502 * 109.47019 * 205.24674 * 17 15 13 20 20 H 1.48499 * 109.47577 * 325.24892 * 17 15 13 21 21 C 1.41784 * 119.33329 * 359.46636 * 5 4 3 22 22 N 1.33346 * 121.04926 * 180.28044 * 21 5 4 23 23 C 1.31236 * 121.35059 * 179.97438 * 22 21 5 24 24 C 1.39228 * 121.69641 * 0.02562 * 23 22 21 25 25 C 1.36637 * 119.91072 * 359.97438 * 24 23 22 26 26 C 1.40447 * 119.95539 * 180.02562 * 2 1 3 27 27 H 1.08991 * 109.47462 * 269.98129 * 1 2 3 28 28 H 1.09002 * 109.46311 * 29.98039 * 1 2 3 29 29 H 1.08996 * 109.46943 * 149.97550 * 1 2 3 30 30 H 1.08005 * 119.46890 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.64222 * 180.28370 * 4 3 2 32 32 H 1.08995 * 109.47444 * 263.86285 * 9 8 6 33 33 H 1.08995 * 109.46961 * 143.85786 * 9 8 6 34 34 H 1.08999 * 109.46816 * 23.86329 * 9 8 6 35 35 H 1.09007 * 109.46920 * 173.36259 * 12 10 8 36 36 H 1.08996 * 109.46923 * 293.35928 * 12 10 8 37 37 H 1.08998 * 109.46811 * 53.36455 * 12 10 8 38 38 H 0.96996 * 120.00367 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.15088 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.04752 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.92572 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1812 0.0000 4 6 3.5763 1.2079 0.0058 5 6 4.3080 0.0290 0.0001 6 6 5.7818 0.0673 0.0007 7 8 6.4145 -0.8680 -0.4505 8 7 6.4278 1.1390 0.5013 9 6 5.6671 2.2429 1.0920 10 6 7.8908 1.2001 0.4546 11 1 8.2774 0.2962 -0.0162 12 6 8.4423 1.3092 1.8776 13 6 8.3181 2.4050 -0.3435 14 1 7.7416 3.3169 -0.2950 15 6 9.4449 2.3429 -1.1356 16 7 9.8787 3.4230 -1.7478 17 14 10.3555 0.7246 -1.3391 18 1 9.7261 -0.0639 -2.4288 19 1 11.7753 0.9951 -1.6804 20 1 10.2892 -0.0438 -0.0702 21 6 3.6240 -1.2129 -0.0003 22 7 4.2930 -2.3665 -0.0001 23 6 3.6659 -3.5194 0.0000 24 6 2.2758 -3.5960 -0.0006 25 6 1.5303 -2.4510 -0.0008 26 6 2.2083 -1.2168 -0.0005 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3632 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6386 2.1112 0.0004 31 1 4.0923 2.1566 0.0104 32 1 5.5240 3.0254 0.3469 33 1 6.2151 2.6473 1.9430 34 1 4.6961 1.8772 1.4259 35 1 9.5297 1.2360 1.8525 36 1 8.1525 2.2682 2.3070 37 1 8.0378 0.5010 2.4869 38 1 10.6716 3.3794 -2.3048 39 1 4.2432 -4.4322 -0.0003 40 1 1.7873 -4.5592 -0.0001 41 1 0.4510 -2.4913 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931940708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:03 Heat of formation + Delta-G solvation = 46.577608 kcal Electronic energy + Delta-G solvation = -24033.784583 eV Core-core repulsion = 20686.763858 eV Total energy + Delta-G solvation = -3347.020725 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.05286 -38.98069 -37.20010 -35.33850 -34.19941 -32.64391 -31.35638 -30.66607 -30.00020 -27.35133 -26.48026 -25.21556 -24.21219 -23.60150 -22.28942 -20.41901 -18.68525 -18.38929 -17.15442 -17.05348 -16.48060 -15.69154 -15.19683 -14.93379 -14.65187 -14.27223 -14.00430 -13.76989 -13.64401 -13.42627 -13.28118 -12.91184 -12.53868 -12.41823 -12.27733 -12.17959 -12.05773 -11.68877 -11.42558 -11.30215 -10.99341 -10.82842 -10.54604 -10.36917 -10.32581 -9.75165 -9.49446 -9.21586 -8.80391 -8.74423 -8.56252 -8.09790 -7.56838 -6.13821 -4.15467 0.21348 0.81515 1.81348 2.79939 3.36045 3.43294 3.51985 3.65457 3.83227 4.25434 4.32506 4.43123 4.46733 4.65622 4.70892 4.74471 4.97198 5.00983 5.15228 5.25442 5.29824 5.32061 5.40742 5.55526 5.64892 5.74221 5.90792 5.93891 5.98110 6.00332 6.20923 6.25062 6.30228 6.39430 6.45787 6.48904 6.64080 6.79739 6.99648 7.14143 7.53886 7.69712 8.06171 8.22049 8.54254 8.87666 9.07940 9.49623 10.98013 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.020902 B = 0.004604 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.238200 B = 6080.352039 C = 6836.231427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.054 4.054 3 C -0.125 4.125 4 C -0.083 4.083 5 C -0.100 4.100 6 C 0.545 3.455 7 O -0.521 6.521 8 N -0.586 5.586 9 C 0.068 3.932 10 C 0.224 3.776 11 H 0.066 0.934 12 C -0.147 4.147 13 C -0.523 4.523 14 H 0.078 0.922 15 C 0.080 3.920 16 N -0.892 5.892 17 Si 0.874 3.126 18 H -0.271 1.271 19 H -0.288 1.288 20 H -0.263 1.263 21 C 0.164 3.836 22 N -0.437 5.437 23 C 0.126 3.874 24 C -0.179 4.179 25 C -0.063 4.063 26 C -0.108 4.108 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.161 0.839 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.157 0.843 40 H 0.135 0.865 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.690 -7.809 6.078 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.103 4.103 5 C -0.104 4.104 6 C 0.332 3.668 7 O -0.398 6.398 8 N -0.318 5.318 9 C -0.075 4.075 10 C 0.124 3.876 11 H 0.083 0.917 12 C -0.206 4.206 13 C -0.561 4.561 14 H 0.096 0.904 15 C -0.124 4.124 16 N -0.529 5.529 17 Si 0.700 3.300 18 H -0.196 1.196 19 H -0.214 1.214 20 H -0.187 1.187 21 C 0.041 3.959 22 N -0.144 5.144 23 C -0.047 4.047 24 C -0.199 4.199 25 C -0.089 4.089 26 C -0.111 4.111 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.178 0.822 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.175 0.825 40 H 0.153 0.847 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.211 -8.076 5.718 21.610 hybrid contribution -0.406 -0.693 -0.247 0.840 sum -19.617 -8.769 5.471 22.173 Atomic orbital electron populations 1.20871 0.90688 1.03208 1.02672 1.19814 0.96033 0.92067 0.97616 1.20769 0.93979 0.97823 1.01721 1.22380 0.94149 0.99317 0.94430 1.20141 0.94799 0.91687 1.03796 1.17912 0.86001 0.83047 0.79815 1.90764 1.67400 1.35472 1.46154 1.48240 1.08687 1.17210 1.57632 1.22226 0.96115 0.90590 0.98560 1.19329 0.75251 0.99139 0.93887 0.91650 1.22209 1.00711 0.99476 0.98162 1.21118 1.10927 0.97685 1.26403 0.90435 1.24947 0.96743 0.96289 0.94385 1.69884 1.24112 1.27962 1.30956 0.86902 0.78635 0.84456 0.79961 1.19608 1.21423 1.18725 1.18632 0.88825 0.91967 0.96485 1.68274 1.39105 0.97362 1.09623 1.23129 0.91844 0.96364 0.93364 1.21909 0.95676 0.99396 1.02895 1.21441 1.00207 0.91342 0.95932 1.18641 0.93728 0.94293 1.04392 0.90652 0.90871 0.91266 0.84996 0.82215 0.92139 0.91421 0.91181 0.92628 0.93130 0.95412 0.92418 0.82531 0.84723 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 9.53 36.01 0.34 -0.49 16 2 C -0.05 -0.60 5.89 -104.47 -0.62 -1.22 16 3 C -0.12 -1.42 9.57 -40.03 -0.38 -1.81 16 4 C -0.08 -1.20 7.49 -39.16 -0.29 -1.49 16 5 C -0.10 -1.86 5.57 -104.61 -0.58 -2.44 16 6 C 0.55 12.44 7.43 -12.52 -0.09 12.35 16 7 O -0.52 -13.89 14.95 5.28 0.08 -13.81 16 8 N -0.59 -12.90 2.75 -176.53 -0.49 -13.39 16 9 C 0.07 1.15 7.88 59.85 0.47 1.62 16 10 C 0.22 5.61 2.31 -69.08 -0.16 5.45 16 11 H 0.07 1.81 4.00 -51.93 -0.21 1.60 16 12 C -0.15 -3.21 8.99 37.16 0.33 -2.88 16 13 C -0.52 -14.61 8.82 -34.44 -0.30 -14.91 16 14 H 0.08 2.26 7.53 -52.49 -0.40 1.87 16 15 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 16 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 17 Si 0.87 22.82 27.02 -169.99 -4.59 18.22 16 18 H -0.27 -7.30 7.11 56.52 0.40 -6.89 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.26 -6.67 6.77 56.52 0.38 -6.29 16 21 C 0.16 2.89 6.59 -84.58 -0.56 2.33 16 22 N -0.44 -8.10 8.75 -10.76 -0.09 -8.19 16 23 C 0.13 1.71 11.15 -17.44 -0.19 1.51 16 24 C -0.18 -1.85 10.03 -39.79 -0.40 -2.25 16 25 C -0.06 -0.67 9.36 -39.19 -0.37 -1.03 16 26 C -0.11 -1.47 5.74 -106.82 -0.61 -2.08 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.07 0.42 6.42 -51.93 -0.33 0.09 16 30 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.16 2.15 4.35 -52.49 -0.23 1.93 16 32 H 0.06 0.99 7.13 -51.93 -0.37 0.62 16 33 H 0.07 1.09 6.61 -51.93 -0.34 0.75 16 34 H 0.07 0.98 4.84 -51.93 -0.25 0.73 16 35 H 0.05 1.22 8.14 -51.92 -0.42 0.80 16 36 H 0.05 1.02 7.01 -51.93 -0.36 0.66 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.14 0.97 6.42 -52.49 -0.34 0.63 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -36.36 329.49 -7.80 -44.17 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -4.94 Total: -0.56 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.51 Total: -5.10 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.19 Total: -47.89 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.59 Total: 18.22 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.36 -7.80 -44.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.743 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds