Wall clock time and date at job start Fri Apr 10 2020 20:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36345 * 119.96140 * 2 1 4 4 C 1.38868 * 121.06029 * 179.71896 * 3 2 1 5 5 C 1.38746 * 120.72412 * 0.56317 * 4 3 2 6 6 C 1.47434 * 120.33544 * 179.74494 * 5 4 3 7 7 O 1.21602 * 119.99882 * 205.09721 * 6 5 4 8 8 N 1.34773 * 119.99946 * 25.09373 * 6 5 4 9 9 C 1.46505 * 120.00190 * 2.37144 * 8 6 5 10 10 C 1.46502 * 119.99957 * 182.37698 * 8 6 5 11 11 H 1.08996 * 109.47187 * 359.97438 * 10 8 6 12 12 C 1.53006 * 109.46755 * 239.99832 * 10 8 6 13 13 C 1.50703 * 109.47239 * 120.00234 * 10 8 6 14 14 H 1.07999 * 120.00070 * 35.35090 * 13 10 8 15 15 C 1.37878 * 119.99903 * 215.35829 * 13 10 8 16 16 N 1.31509 * 120.00496 * 185.42293 * 15 13 10 17 17 Si 1.86804 * 119.99613 * 5.42189 * 15 13 10 18 18 H 1.48500 * 109.47084 * 85.25192 * 17 15 13 19 19 H 1.48502 * 109.47019 * 205.24674 * 17 15 13 20 20 H 1.48499 * 109.47577 * 325.24892 * 17 15 13 21 21 C 1.41784 * 119.33329 * 359.46636 * 5 4 3 22 22 N 1.33346 * 121.04926 * 180.28044 * 21 5 4 23 23 C 1.31236 * 121.35059 * 179.97438 * 22 21 5 24 24 C 1.39228 * 121.69641 * 0.02562 * 23 22 21 25 25 C 1.36637 * 119.91072 * 359.97438 * 24 23 22 26 26 C 1.40447 * 119.95539 * 180.02562 * 2 1 3 27 27 H 1.08991 * 109.47462 * 269.98129 * 1 2 3 28 28 H 1.09002 * 109.46311 * 29.98039 * 1 2 3 29 29 H 1.08996 * 109.46943 * 149.97550 * 1 2 3 30 30 H 1.08005 * 119.46890 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.64222 * 180.28370 * 4 3 2 32 32 H 1.08995 * 109.47444 * 263.86285 * 9 8 6 33 33 H 1.08995 * 109.46961 * 143.85786 * 9 8 6 34 34 H 1.08999 * 109.46816 * 23.86329 * 9 8 6 35 35 H 1.09007 * 109.46920 * 173.36259 * 12 10 8 36 36 H 1.08996 * 109.46923 * 293.35928 * 12 10 8 37 37 H 1.08998 * 109.46811 * 53.36455 * 12 10 8 38 38 H 0.96996 * 120.00367 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.15088 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.04752 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.92572 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1812 0.0000 4 6 3.5763 1.2079 0.0058 5 6 4.3080 0.0290 0.0001 6 6 5.7818 0.0673 0.0007 7 8 6.4145 -0.8680 -0.4505 8 7 6.4278 1.1390 0.5013 9 6 5.6671 2.2429 1.0920 10 6 7.8908 1.2001 0.4546 11 1 8.2774 0.2962 -0.0162 12 6 8.4423 1.3092 1.8776 13 6 8.3181 2.4050 -0.3435 14 1 7.7416 3.3169 -0.2950 15 6 9.4449 2.3429 -1.1356 16 7 9.8787 3.4230 -1.7478 17 14 10.3555 0.7246 -1.3391 18 1 9.7261 -0.0639 -2.4288 19 1 11.7753 0.9951 -1.6804 20 1 10.2892 -0.0438 -0.0702 21 6 3.6240 -1.2129 -0.0003 22 7 4.2930 -2.3665 -0.0001 23 6 3.6659 -3.5194 0.0000 24 6 2.2758 -3.5960 -0.0006 25 6 1.5303 -2.4510 -0.0008 26 6 2.2083 -1.2168 -0.0005 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3632 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6386 2.1112 0.0004 31 1 4.0923 2.1566 0.0104 32 1 5.5240 3.0254 0.3469 33 1 6.2151 2.6473 1.9430 34 1 4.6961 1.8772 1.4259 35 1 9.5297 1.2360 1.8525 36 1 8.1525 2.2682 2.3070 37 1 8.0378 0.5010 2.4869 38 1 10.6716 3.3794 -2.3048 39 1 4.2432 -4.4322 -0.0003 40 1 1.7873 -4.5592 -0.0001 41 1 0.4510 -2.4913 -0.0008 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931940708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:02 Heat of formation + Delta-G solvation = 21.887373 kcal Electronic energy + Delta-G solvation = -24034.855232 eV Core-core repulsion = 20686.763858 eV Total energy + Delta-G solvation = -3348.091374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12732 -40.51280 -38.23646 -37.14001 -35.38143 -34.55022 -32.70570 -31.71067 -31.37542 -28.36829 -27.89583 -27.29288 -25.18071 -24.64895 -23.69091 -21.82386 -20.27372 -19.47700 -19.04560 -18.08840 -17.88131 -17.29140 -16.68702 -16.32544 -15.97736 -15.56557 -15.23295 -14.98192 -14.89732 -14.63437 -14.32460 -14.18970 -14.09887 -14.05719 -13.74887 -13.36484 -13.19800 -13.07395 -12.87599 -12.73684 -12.55868 -12.37595 -12.20120 -11.88139 -11.73645 -11.34857 -11.30620 -10.83238 -10.81598 -10.12576 -9.76842 -9.39177 -9.07909 -8.40529 -6.42984 -0.78704 -0.15860 0.79686 1.22300 1.29072 1.39083 1.78809 2.19884 2.24380 2.27060 3.01189 3.13803 3.35347 3.51453 3.75363 3.82724 3.92156 3.96719 4.08989 4.26570 4.37570 4.46440 4.48276 4.56162 4.65450 4.70065 4.74628 4.79062 4.86554 4.87855 4.92031 5.01519 5.08723 5.12192 5.22643 5.23766 5.33161 5.45456 5.50879 5.61374 5.81188 5.88539 6.15617 6.60581 6.71600 7.09859 7.22228 7.41899 8.74683 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.020902 B = 0.004604 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.238200 B = 6080.352039 C = 6836.231427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.029 4.029 3 C -0.136 4.136 4 C -0.066 4.066 5 C -0.156 4.156 6 C 0.537 3.463 7 O -0.579 6.579 8 N -0.595 5.595 9 C 0.067 3.933 10 C 0.222 3.778 11 H 0.035 0.965 12 C -0.138 4.138 13 C -0.516 4.516 14 H 0.059 0.941 15 C 0.035 3.965 16 N -0.930 5.930 17 Si 0.921 3.079 18 H -0.290 1.290 19 H -0.271 1.271 20 H -0.256 1.256 21 C 0.137 3.863 22 N -0.510 5.510 23 C 0.117 3.883 24 C -0.174 4.174 25 C -0.050 4.050 26 C -0.127 4.127 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.173 0.827 31 H 0.164 0.836 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.269 0.731 39 H 0.171 0.829 40 H 0.179 0.821 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.200 -8.402 7.213 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.031 4.031 3 C -0.153 4.153 4 C -0.086 4.086 5 C -0.159 4.159 6 C 0.327 3.673 7 O -0.460 6.460 8 N -0.326 5.326 9 C -0.075 4.075 10 C 0.120 3.880 11 H 0.053 0.947 12 C -0.196 4.196 13 C -0.555 4.555 14 H 0.077 0.923 15 C -0.165 4.165 16 N -0.569 5.569 17 Si 0.747 3.253 18 H -0.217 1.217 19 H -0.196 1.196 20 H -0.180 1.180 21 C 0.014 3.986 22 N -0.218 5.218 23 C -0.054 4.054 24 C -0.194 4.194 25 C -0.075 4.075 26 C -0.129 4.129 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.190 0.810 31 H 0.181 0.819 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.188 0.812 40 H 0.197 0.803 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -23.745 -8.645 6.885 26.191 hybrid contribution 0.760 -0.573 -0.591 1.120 sum -22.985 -9.218 6.294 25.552 Atomic orbital electron populations 1.21040 0.86875 1.05035 1.04449 1.20407 0.98478 0.90844 0.93328 1.21153 0.92475 0.99897 1.01808 1.22510 0.95777 0.97915 0.92400 1.19889 0.92063 0.94082 1.09914 1.18686 0.88165 0.82095 0.78345 1.90694 1.69123 1.37496 1.48641 1.48183 1.07798 1.18644 1.57979 1.22472 0.97192 0.89234 0.98585 1.19135 0.77570 0.96237 0.95036 0.94717 1.22060 1.00325 1.00970 0.96271 1.21318 1.10135 0.97947 1.26070 0.92286 1.25521 0.97862 0.98424 0.94737 1.69960 1.25123 1.29366 1.32444 0.86154 0.78318 0.81409 0.79421 1.21670 1.19629 1.18043 1.18865 0.90839 0.91334 0.97515 1.68178 1.41616 0.99044 1.12957 1.23631 0.94074 0.95641 0.92082 1.22294 0.94045 1.01596 1.01415 1.21997 1.02298 0.89874 0.93349 1.18982 0.92188 0.96833 1.04943 0.88538 0.89016 0.89606 0.81000 0.81900 0.91863 0.90660 0.88041 0.93005 0.91408 0.94027 0.92167 0.81215 0.80335 0.79799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.53 71.24 0.68 -0.25 16 2 C -0.03 -0.54 5.89 -19.77 -0.12 -0.65 16 3 C -0.14 -2.64 9.57 21.98 0.21 -2.43 16 4 C -0.07 -1.86 7.49 22.54 0.17 -1.69 16 5 C -0.16 -5.96 5.57 -19.86 -0.11 -6.07 16 6 C 0.54 25.96 7.43 86.67 0.64 26.60 16 7 O -0.58 -33.26 14.95 -4.04 -0.06 -33.32 16 8 N -0.60 -27.19 2.75 -830.67 -2.29 -29.48 16 9 C 0.07 2.25 7.88 127.77 1.01 3.26 16 10 C 0.22 11.51 2.31 44.25 0.10 11.61 16 11 H 0.03 2.02 4.00 -2.39 -0.01 2.01 16 12 C -0.14 -6.06 8.99 71.98 0.65 -5.42 16 13 C -0.52 -29.78 8.82 25.60 0.23 -29.56 16 14 H 0.06 3.56 7.53 -2.91 -0.02 3.54 16 15 C 0.03 2.07 5.47 84.66 0.46 2.53 16 16 N -0.93 -57.99 13.96 21.45 0.30 -57.69 16 17 Si 0.92 48.91 27.02 68.60 1.85 50.76 16 18 H -0.29 -16.18 7.11 99.48 0.71 -15.48 16 19 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.26 -13.19 6.77 99.48 0.67 -12.51 16 21 C 0.14 4.92 6.59 40.61 0.27 5.18 16 22 N -0.51 -19.79 8.75 -187.96 -1.64 -21.43 16 23 C 0.12 3.17 11.15 85.02 0.95 4.12 16 24 C -0.17 -3.06 10.03 22.13 0.22 -2.83 16 25 C -0.05 -0.84 9.36 22.52 0.21 -0.63 16 26 C -0.13 -3.14 5.74 -21.29 -0.12 -3.26 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.48 8.08 -2.39 -0.02 0.46 16 29 H 0.09 0.45 6.42 -2.39 -0.02 0.44 16 30 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.16 4.27 4.35 -2.91 -0.01 4.26 16 32 H 0.06 2.08 7.13 -2.39 -0.02 2.07 16 33 H 0.07 2.39 6.61 -2.39 -0.02 2.37 16 34 H 0.10 2.77 4.84 -2.39 -0.01 2.75 16 35 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.07 2.71 7.01 -2.39 -0.02 2.69 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 40 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 41 H 0.18 1.33 6.42 -2.91 -0.02 1.31 16 Total: -1.00 -87.67 329.49 4.64 -83.03 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: 1.03 Total: 7.61 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.45 Total: 0.52 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -3.63 Total: -108.60 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.06 Total: -33.32 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.85 Total: 50.76 kcal Total: -87.67 4.64 -83.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931940708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.920 kcal (2) G-P(sol) polarization free energy of solvation -87.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds