Wall clock time and date at job start Fri Apr 10 2020 20:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38264 * 119.90192 * 2 1 4 4 C 1.38010 * 120.18161 * 179.72196 * 3 2 1 5 5 C 1.39435 * 119.99066 * 0.51253 * 4 3 2 6 6 C 1.48304 * 120.10241 * 179.76392 * 5 4 3 7 7 C 1.40036 * 119.98401 * 184.72297 * 6 5 4 8 8 N 1.32177 * 120.29341 * 180.25516 * 7 6 5 9 9 C 1.31891 * 120.28296 * 359.48982 * 8 7 6 10 10 C 1.40821 * 119.96163 * 0.53248 * 9 8 7 11 11 C 1.41339 * 120.14420 * 179.70286 * 10 9 8 12 12 H 1.07998 * 119.99587 * 6.83904 * 11 10 9 13 13 C 1.40046 * 119.99874 * 186.83885 * 11 10 9 14 14 N 1.30734 * 120.00389 * 353.32919 * 13 11 10 15 15 Si 1.86801 * 120.00023 * 173.32318 * 13 11 10 16 16 H 1.48497 * 109.46993 * 89.99941 * 15 13 11 17 17 H 1.48496 * 109.47179 * 210.00456 * 15 13 11 18 18 H 1.48500 * 109.47086 * 330.00653 * 15 13 11 19 19 N 1.32518 * 119.98641 * 4.74838 * 6 5 4 20 20 C 1.39300 * 119.79850 * 359.49337 * 5 4 3 21 21 C 1.38531 * 119.81074 * 0.25010 * 20 5 4 22 22 O 1.35914 * 119.98587 * 179.97438 * 21 20 5 23 23 C 1.42893 * 117.00452 * 5.52473 * 22 21 20 24 24 C 1.52996 * 109.47590 * 155.80614 * 23 22 21 25 25 C 1.53005 * 109.46802 * 275.80527 * 23 22 21 26 26 H 1.09003 * 109.46667 * 270.01711 * 1 2 3 27 27 H 1.08998 * 109.46848 * 30.02149 * 1 2 3 28 28 H 1.08998 * 109.46825 * 150.02207 * 1 2 3 29 29 H 1.07997 * 119.90899 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.00742 * 180.25423 * 4 3 2 31 31 H 1.07992 * 119.84945 * 359.97438 * 7 6 5 32 32 H 1.07992 * 120.01681 * 180.27419 * 9 8 7 33 33 H 0.96995 * 120.00399 * 179.97438 * 14 13 11 34 34 H 1.07995 * 120.09434 * 180.27411 * 20 5 4 35 35 H 1.09000 * 109.47349 * 35.80154 * 23 22 21 36 36 H 1.09004 * 109.46790 * 59.99733 * 24 23 22 37 37 H 1.08994 * 109.47375 * 179.97438 * 24 23 22 38 38 H 1.09005 * 109.47028 * 299.99994 * 24 23 22 39 39 H 1.08993 * 109.47155 * 299.99640 * 25 23 22 40 40 H 1.09006 * 109.46794 * 60.00172 * 25 23 22 41 41 H 1.09004 * 109.47202 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1986 0.0000 4 6 3.5764 1.2053 0.0058 5 6 4.2793 0.0011 0.0009 6 6 5.7623 0.0055 0.0018 7 6 6.4658 -1.2008 -0.1030 8 7 7.7875 -1.2044 -0.0978 9 6 8.4554 -0.0710 -0.0039 10 6 7.7594 1.1486 0.1026 11 6 8.4713 2.3650 0.2098 12 1 9.5456 2.3734 0.0995 13 6 7.7835 3.5591 0.4590 14 7 6.4762 3.5720 0.4631 15 14 8.7339 5.1337 0.7859 16 1 8.9845 5.8362 -0.4981 17 1 7.9427 6.0120 1.6846 18 1 10.0303 4.8045 1.4311 19 7 6.4212 1.1509 0.1023 20 6 3.5842 -1.2061 0.0008 21 6 2.1989 -1.2033 0.0003 22 8 1.5172 -2.3791 -0.0003 23 6 2.2880 -3.5760 0.1221 24 6 1.4114 -4.6908 0.6961 25 6 2.8054 -3.9926 -1.2562 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6532 2.1321 -0.0004 30 1 4.1119 2.1432 0.0099 31 1 5.9259 -2.1326 -0.1840 32 1 9.5353 -0.0786 -0.0044 33 1 5.9998 4.3990 0.6361 34 1 4.1238 -2.1416 0.0014 35 1 3.1321 -3.3981 0.7884 36 1 0.5673 -4.8687 0.0297 37 1 1.9993 -5.6039 0.7891 38 1 1.0428 -4.3940 1.6781 39 1 1.9613 -4.1706 -1.9225 40 1 3.4300 -3.1983 -1.6651 41 1 3.3938 -4.9054 -1.1629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244447607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:34 Heat of formation + Delta-G solvation = 12.715748 kcal Electronic energy + Delta-G solvation = -23525.580975 eV Core-core repulsion = 20177.091890 eV Total energy + Delta-G solvation = -3348.489086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.14004 -38.95800 -37.30985 -34.17032 -33.64503 -32.59386 -31.70232 -29.97833 -29.54128 -27.31737 -26.64347 -25.74209 -23.29648 -22.74071 -21.82421 -20.45185 -20.37929 -17.82706 -17.43792 -15.83428 -15.69228 -15.60958 -15.28564 -14.91184 -14.66172 -14.41292 -13.85739 -13.53969 -13.39597 -13.09018 -12.87724 -12.74142 -12.49445 -12.35708 -12.04714 -11.96757 -11.64236 -11.55103 -11.49422 -11.38077 -11.09273 -10.85352 -10.70227 -10.65117 -10.49011 -10.27230 -9.88652 -9.59373 -9.31680 -8.45995 -7.91207 -7.52086 -7.28138 -6.60337 -4.76431 1.39435 1.94296 2.61605 2.97226 2.99063 3.02090 3.12957 3.38260 3.79484 4.25368 4.65416 4.76710 4.88647 5.04810 5.08014 5.18191 5.36271 5.46420 5.54276 5.60529 5.65748 5.71310 5.72314 5.78642 5.85610 5.94489 5.97720 5.99477 6.10481 6.16748 6.20263 6.25686 6.33352 6.52630 6.71518 6.83862 6.94112 7.00084 7.09068 7.30263 7.34069 7.56175 7.77801 7.96985 8.33364 8.57709 9.14960 9.72890 10.05688 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004242 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.218291 B = 6598.998790 C = 7897.272891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.126 4.126 3 C -0.096 4.096 4 C -0.109 4.109 5 C 0.014 3.986 6 C 0.135 3.865 7 C -0.107 4.107 8 N -0.430 5.430 9 C -0.061 4.061 10 C 0.208 3.792 11 C -0.412 4.412 12 H 0.091 0.909 13 C 0.067 3.933 14 N -0.710 5.710 15 Si 0.913 3.087 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.259 1.259 19 N -0.439 5.439 20 C -0.193 4.193 21 C 0.116 3.884 22 O -0.312 6.312 23 C 0.075 3.925 24 C -0.146 4.146 25 C -0.181 4.181 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.134 0.866 33 H 0.278 0.722 34 H 0.130 0.870 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 -6.234 -0.089 11.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.128 4.128 5 C 0.012 3.988 6 C -0.012 4.012 7 C -0.266 4.266 8 N -0.141 5.141 9 C -0.231 4.231 10 C 0.081 3.919 11 C -0.444 4.444 12 H 0.110 0.890 13 C -0.160 4.160 14 N -0.331 5.331 15 Si 0.737 3.263 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.183 1.183 19 N -0.156 5.156 20 C -0.212 4.212 21 C 0.072 3.928 22 O -0.226 6.226 23 C 0.019 3.981 24 C -0.203 4.203 25 C -0.239 4.239 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.169 0.831 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.089 0.911 34 H 0.148 0.852 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.481 -6.130 -0.070 12.142 hybrid contribution 0.734 0.600 0.149 0.960 sum -9.746 -5.530 0.079 11.206 Atomic orbital electron populations 1.20533 0.91226 1.02101 1.01639 1.19208 0.95911 0.90480 1.07134 1.20837 0.94206 0.96307 1.00098 1.21574 0.93111 0.99585 0.98544 1.18477 0.91275 0.92321 0.96687 1.20643 0.92570 0.91657 0.96320 1.22459 0.90742 0.96776 1.16580 1.67664 1.08432 1.30542 1.07490 1.23225 0.99291 0.89211 1.11392 1.19373 0.88800 0.93487 0.90251 1.19641 0.95076 0.90142 1.39494 0.89046 1.26121 0.95027 1.01027 0.93778 1.70038 1.07758 1.28030 1.27226 0.86219 0.80537 0.80285 0.79280 1.19209 1.19913 1.18308 1.69519 1.07669 1.23485 1.14971 1.21310 0.92537 0.98900 1.08480 1.18515 0.89992 0.85286 0.99007 1.86043 1.35954 1.12141 1.88508 1.22370 0.94658 0.83755 0.97313 1.21824 1.00255 0.96687 1.01502 1.22395 1.01954 1.02430 0.97071 0.92011 0.92159 0.91657 0.85850 0.83139 0.85763 0.84806 0.91123 0.85192 0.90843 0.91720 0.90739 0.91814 0.91717 0.91433 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.78 36.01 0.35 -0.89 16 2 C -0.13 -2.03 5.90 -104.40 -0.62 -2.64 16 3 C -0.10 -1.62 9.68 -39.66 -0.38 -2.01 16 4 C -0.11 -2.21 9.58 -39.22 -0.38 -2.59 16 5 C 0.01 0.30 5.87 -104.92 -0.62 -0.32 16 6 C 0.14 3.31 6.73 -82.76 -0.56 2.75 16 7 C -0.11 -2.54 10.61 -16.73 -0.18 -2.71 16 8 N -0.43 -10.69 10.47 -12.06 -0.13 -10.81 16 9 C -0.06 -1.53 10.98 -16.55 -0.18 -1.71 16 10 C 0.21 5.52 6.54 -84.84 -0.55 4.97 16 11 C -0.41 -10.39 9.15 -37.73 -0.35 -10.74 16 12 H 0.09 2.11 7.86 -52.49 -0.41 1.70 16 13 C 0.07 1.60 5.49 -17.34 -0.10 1.50 16 14 N -0.71 -17.55 11.52 55.55 0.64 -16.91 16 15 Si 0.91 17.47 29.57 -169.99 -5.03 12.44 16 16 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 19 N -0.44 -11.72 7.18 -7.50 -0.05 -11.77 16 20 C -0.19 -3.51 7.58 -39.08 -0.30 -3.81 16 21 C 0.12 1.95 6.56 -39.27 -0.26 1.69 16 22 O -0.31 -4.60 8.83 -19.47 -0.17 -4.78 16 23 C 0.08 0.92 2.85 -26.73 -0.08 0.84 16 24 C -0.15 -1.37 9.56 37.16 0.36 -1.01 16 25 C -0.18 -2.06 9.15 37.16 0.34 -1.72 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.06 0.81 7.52 -51.93 -0.39 0.42 16 29 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.15 3.36 7.55 -52.48 -0.40 2.96 16 31 H 0.12 2.58 6.22 -52.49 -0.33 2.25 16 32 H 0.13 3.01 8.06 -52.49 -0.42 2.58 16 33 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 34 H 0.13 2.20 3.55 -52.49 -0.19 2.01 16 35 H 0.07 0.94 6.36 -51.93 -0.33 0.61 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.89 6.82 -51.93 -0.35 0.53 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -28.80 342.10 -8.40 -37.20 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.33 Total: 7.87 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.48 Total: -18.40 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.46 Total: -39.49 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.17 Total: -4.78 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.80 -8.40 -37.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244447607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.911 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds