Wall clock time and date at job start Fri Apr 10 2020 20:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47224 * 2 1 4 4 H 1.08998 * 109.46639 * 55.00201 * 3 2 1 5 5 C 1.50703 * 109.46833 * 174.99858 * 3 2 1 6 6 H 1.07995 * 119.99807 * 120.00534 * 5 3 2 7 7 C 1.37878 * 119.99943 * 300.00023 * 5 3 2 8 8 N 1.31513 * 120.00006 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99844 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47623 * 89.99809 * 9 7 5 11 11 H 1.48506 * 109.46951 * 209.99904 * 9 7 5 12 12 H 1.48505 * 109.47002 * 329.99443 * 9 7 5 13 13 N 1.46497 * 109.47099 * 294.99786 * 3 2 1 14 14 C 1.30293 * 119.99979 * 126.63391 * 13 3 2 15 15 N 1.37815 * 119.99941 * 187.30119 * 14 13 3 16 16 C 1.47984 * 120.00060 * 7.30006 * 14 13 3 17 17 C 1.40568 * 119.72421 * 45.21610 * 16 14 13 18 18 C 1.35738 * 120.83204 * 180.02562 * 17 16 14 19 19 C 1.40737 * 120.00992 * 359.91252 * 18 17 16 20 20 C 1.40383 * 120.97742 * 180.02562 * 19 18 17 21 21 C 1.37625 * 119.57741 * 180.02562 * 20 19 18 22 22 O 1.35837 * 119.63533 * 179.97438 * 21 20 19 23 23 C 1.39893 * 120.73340 * 0.02562 * 21 20 19 24 24 C 1.35928 * 120.90064 * 0.25312 * 23 21 20 25 25 C 1.40694 * 119.88186 * 359.46135 * 24 23 21 26 26 C 1.38380 * 119.73109 * 225.19589 * 16 14 13 27 27 H 1.09004 * 109.46969 * 60.00270 * 1 2 3 28 28 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47204 * 300.00219 * 1 2 3 30 30 H 1.09001 * 109.47344 * 239.99354 * 2 1 3 31 31 H 1.09001 * 109.46750 * 120.00650 * 2 1 3 32 32 H 0.97001 * 119.99367 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99503 * 179.97438 * 15 14 13 34 34 H 0.96996 * 120.00320 * 0.02562 * 15 14 13 35 35 H 1.08002 * 119.59180 * 0.02562 * 17 16 14 36 36 H 1.08000 * 119.99653 * 179.97438 * 18 17 16 37 37 H 1.07992 * 120.21145 * 0.03868 * 20 19 18 38 38 H 0.96705 * 114.00269 * 270.02074 * 22 21 20 39 39 H 1.08000 * 119.55461 * 179.97438 * 23 21 20 40 40 H 1.07999 * 120.05832 * 179.72761 * 24 23 21 41 41 H 1.08000 * 120.25328 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8418 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8782 1.2280 8 7 3.4061 0.3374 2.1734 9 14 6.0049 0.8810 1.3819 10 1 6.4418 2.1139 2.0850 11 1 6.4394 -0.3101 2.1551 12 1 6.6135 0.8412 0.0279 13 7 1.6525 2.0974 -1.2518 14 6 1.0075 3.2291 -1.2224 15 7 0.5114 3.7700 -2.3889 16 6 0.8076 3.9337 0.0635 17 6 1.8823 4.0668 0.9597 18 6 1.7240 4.7082 2.1455 19 6 0.4724 5.2518 2.4901 20 6 0.2860 5.9196 3.7107 21 6 -0.9504 6.4397 4.0187 22 8 -1.1321 7.0857 5.1997 23 6 -2.0224 6.3096 3.1294 24 6 -1.8710 5.6629 1.9434 25 6 -0.6192 5.1242 1.5936 26 6 -0.4356 4.4564 0.3736 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0611 2.9500 33 1 0.0309 4.6123 -2.3669 34 1 0.6421 3.3080 -3.2317 35 1 2.8462 3.6535 0.7017 36 1 2.5588 4.8023 2.8241 37 1 1.1077 6.0248 4.4036 38 1 -1.4103 6.5093 5.9246 39 1 -2.9846 6.7246 3.3906 40 1 -2.7090 5.5665 1.2690 41 1 -1.2578 4.3521 -0.3188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255158721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:38:46 Heat of formation + Delta-G solvation = 17.431728 kcal Electronic energy + Delta-G solvation = -23825.542343 eV Core-core repulsion = 20477.257758 eV Total energy + Delta-G solvation = -3348.284586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29636 -38.40981 -36.85355 -34.62046 -34.29265 -32.19870 -31.78085 -30.47802 -29.32018 -28.42423 -26.66007 -23.52976 -23.07955 -22.78438 -21.75792 -20.51969 -19.12922 -18.26488 -17.05061 -16.59998 -16.19689 -15.85117 -15.83000 -14.90825 -14.68042 -14.52617 -14.16601 -13.68650 -13.31522 -13.21745 -13.04415 -12.84028 -12.40018 -12.33971 -11.93529 -11.61111 -11.37761 -11.17292 -11.00930 -10.85702 -10.84339 -10.56369 -10.34679 -10.15524 -9.77574 -9.70923 -9.62770 -9.16178 -8.55761 -8.20688 -7.85849 -7.59097 -7.19493 -6.02665 -4.09675 0.63453 1.14731 2.19379 2.96283 3.26743 3.34537 3.38791 3.63256 4.14460 4.25377 4.41937 4.42749 4.75973 4.95880 5.11033 5.22206 5.28239 5.33431 5.50284 5.55749 5.74161 5.90099 6.09597 6.14494 6.27020 6.34219 6.37789 6.43680 6.52440 6.56395 6.61736 6.79477 6.90691 6.97275 7.02631 7.17753 7.28734 7.44116 7.60990 7.62638 7.79726 8.02027 8.07310 8.24888 8.41843 8.92491 9.34721 9.59526 11.00631 Molecular weight = 298.14amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.005128 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.667912 B = 5458.495403 C = 6507.094513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C 0.212 3.788 4 H 0.024 0.976 5 C -0.505 4.505 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.558 5.558 14 C 0.388 3.612 15 N -0.860 5.860 16 C -0.066 4.066 17 C -0.058 4.058 18 C -0.119 4.119 19 C -0.028 4.028 20 C -0.131 4.131 21 C 0.096 3.904 22 O -0.502 6.502 23 C -0.150 4.150 24 C -0.085 4.085 25 C -0.065 4.065 26 C -0.096 4.096 27 H 0.038 0.962 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.261 0.739 33 H 0.393 0.607 34 H 0.398 0.602 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.387 0.613 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.411 10.505 1.056 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C 0.103 3.897 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.524 5.524 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.281 5.281 14 C 0.106 3.894 15 N -0.411 5.411 16 C -0.070 4.070 17 C -0.077 4.077 18 C -0.137 4.137 19 C -0.029 4.029 20 C -0.150 4.150 21 C 0.052 3.948 22 O -0.312 6.312 23 C -0.169 4.169 24 C -0.103 4.103 25 C -0.065 4.065 26 C -0.117 4.117 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.221 0.779 34 H 0.227 0.773 35 H 0.171 0.829 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.243 0.757 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.765 10.114 0.493 14.067 hybrid contribution 0.552 0.002 0.958 1.106 sum -9.212 10.116 1.451 13.759 Atomic orbital electron populations 1.21786 0.99552 0.98954 0.99760 1.21540 0.91436 0.99194 1.02300 1.19430 0.95044 0.90972 0.84220 0.95904 1.21138 0.90808 1.37609 1.04856 0.92361 1.24925 0.98031 0.95177 0.95709 1.69892 1.34786 1.38294 1.09417 0.86601 0.85750 0.77562 0.78186 1.20675 1.21162 1.19857 1.71849 1.13488 1.08880 1.33837 1.19949 0.93295 0.91925 0.84193 1.41805 1.64815 1.27467 1.06986 1.19674 0.93903 0.97621 0.95825 1.21501 1.00353 0.93242 0.92589 1.20883 0.95920 0.99379 0.97537 1.17982 0.93848 0.97539 0.93518 1.21502 0.97478 0.98591 0.97413 1.18363 0.92807 0.96022 0.87586 1.84795 1.90551 1.37356 1.18537 1.20971 0.98682 1.01671 0.95549 1.20876 0.96177 0.96869 0.96381 1.17970 0.93402 1.00151 0.94952 1.21295 0.96760 0.97757 0.95854 0.94322 0.94969 0.94399 0.94371 0.88647 0.92878 0.77940 0.77323 0.82861 0.85488 0.85165 0.75746 0.85807 0.85438 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.80 37.16 0.36 -2.70 16 2 C -0.11 -2.64 5.45 -26.73 -0.15 -2.79 16 3 C 0.21 5.32 1.45 -69.08 -0.10 5.22 16 4 H 0.02 0.62 4.90 -51.93 -0.25 0.36 16 5 C -0.51 -13.68 7.21 -34.44 -0.25 -13.93 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.45 11.29 55.43 0.63 -23.82 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.56 -12.67 9.65 -53.14 -0.51 -13.19 16 14 C 0.39 7.33 7.52 -154.27 -1.16 6.17 16 15 N -0.86 -12.10 8.97 32.47 0.29 -11.81 16 16 C -0.07 -1.20 4.78 -104.97 -0.50 -1.70 16 17 C -0.06 -1.14 7.33 -39.60 -0.29 -1.43 16 18 C -0.12 -2.11 9.73 -39.53 -0.38 -2.49 16 19 C -0.03 -0.46 5.74 -106.77 -0.61 -1.07 16 20 C -0.13 -1.88 9.72 -39.00 -0.38 -2.25 16 21 C 0.10 1.25 6.69 -39.19 -0.26 0.99 16 22 O -0.50 -5.63 13.48 -19.23 -0.26 -5.89 16 23 C -0.15 -1.81 9.88 -39.79 -0.39 -2.20 16 24 C -0.08 -1.06 9.74 -39.48 -0.38 -1.45 16 25 C -0.06 -0.98 5.74 -106.83 -0.61 -1.60 16 26 C -0.10 -1.49 9.19 -38.76 -0.36 -1.84 16 27 H 0.04 0.80 7.75 -51.93 -0.40 0.40 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.39 4.32 8.61 -40.82 -0.35 3.97 16 34 H 0.40 5.25 8.95 -40.82 -0.37 4.88 16 35 H 0.15 3.45 5.73 -52.49 -0.30 3.15 16 36 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.39 2.50 9.06 45.56 0.41 2.91 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 341.32 15.07 5.14 5.14 Total: -1.00 -31.21 341.32 -9.79 -41.01 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -4.50 Total: 14.10 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: -5.56 Total: -21.47 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.40 Total: -48.82 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.26 Total: -5.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.21 -9.79 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255158721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.437 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds