Wall clock time and date at job start Fri Apr 10 2020 20:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.48993 * 2 1 4 4 C 1.53090 * 109.48149 * 239.96877 * 2 1 3 5 5 C 1.53171 * 109.16663 * 182.40815 * 4 2 1 6 6 H 1.09006 * 109.54030 * 297.02700 * 5 4 2 7 7 N 1.46497 * 109.54860 * 176.85227 * 5 4 2 8 8 C 1.34772 * 120.00461 * 155.18131 * 7 5 4 9 9 O 1.21588 * 120.00171 * 359.97438 * 8 7 5 10 10 N 1.34779 * 120.00015 * 179.97438 * 8 7 5 11 11 C 1.47025 * 125.64653 * 0.05169 * 10 8 7 12 12 C 1.54328 * 107.26573 * 181.01198 * 11 10 8 13 13 C 1.55151 * 102.94650 * 22.19223 * 12 11 10 14 14 O 1.42901 * 111.00500 * 82.60741 * 13 12 11 15 15 C 1.50704 * 111.00701 * 206.42300 * 13 12 11 16 16 H 1.08000 * 119.99249 * 354.75075 * 15 13 12 17 17 C 1.37875 * 120.00206 * 174.75269 * 15 13 12 18 18 N 1.31518 * 119.99566 * 4.92797 * 17 15 13 19 19 Si 1.86797 * 120.00014 * 184.92692 * 17 15 13 20 20 H 1.48492 * 109.47002 * 94.99937 * 19 17 15 21 21 H 1.48504 * 109.46976 * 215.00114 * 19 17 15 22 22 H 1.48502 * 109.47055 * 334.99790 * 19 17 15 23 23 C 1.47432 * 125.64842 * 179.97438 * 10 8 7 24 24 C 1.53181 * 109.10946 * 56.93418 * 5 4 2 25 25 C 1.53097 * 109.15796 * 303.15522 * 24 5 4 26 26 O 1.42905 * 109.48820 * 57.47344 * 25 24 5 27 27 H 1.09005 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47337 * 300.03121 * 1 2 3 29 29 H 1.09002 * 109.47429 * 60.03184 * 1 2 3 30 30 H 1.09005 * 109.52016 * 62.49994 * 4 2 1 31 31 H 1.08999 * 109.57821 * 302.35303 * 4 2 1 32 32 H 0.97008 * 119.99371 * 335.17530 * 7 5 4 33 33 H 1.08998 * 109.88412 * 61.60188 * 11 10 8 34 34 H 1.08997 * 109.88414 * 300.42538 * 11 10 8 35 35 H 1.09004 * 110.72073 * 263.82629 * 12 11 10 36 36 H 1.09003 * 110.71929 * 140.55659 * 12 11 10 37 37 H 0.96698 * 114.00175 * 180.02562 * 14 13 12 38 38 H 0.97001 * 119.99568 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.36349 * 37.08140 * 23 10 8 40 40 H 1.09000 * 110.45997 * 274.80322 * 23 10 8 41 41 H 1.08998 * 109.51516 * 62.97111 * 24 5 4 42 42 H 1.08998 * 109.52028 * 183.15551 * 24 5 4 43 43 H 1.09005 * 109.40821 * 297.49350 * 25 24 5 44 44 H 1.09000 * 109.49091 * 177.50674 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2495 5 6 3.5710 -0.7709 -1.2122 6 1 3.9688 0.2435 -1.2424 7 7 4.0657 -1.5259 -2.3660 8 6 5.3090 -1.3017 -2.8353 9 8 6.0201 -0.4724 -2.3013 10 7 5.7643 -1.9967 -3.8965 11 6 5.0136 -3.0231 -4.6346 12 6 5.9411 -3.5585 -5.7458 13 6 7.3566 -3.2069 -5.2165 14 8 7.8148 -4.1908 -4.2870 15 6 8.3333 -3.0450 -6.3527 16 1 8.0239 -3.2580 -7.3652 17 6 9.6219 -2.6251 -6.0995 18 7 10.0277 -2.4591 -4.8595 19 14 10.7914 -2.2919 -7.5175 20 1 10.7637 -0.8456 -7.8525 21 1 12.1692 -2.6830 -7.1251 22 1 10.3709 -3.0826 -8.7021 23 6 7.0969 -1.8526 -4.5105 24 6 4.0195 -1.4588 0.0809 25 6 3.4307 -0.7093 1.2790 26 8 2.0065 -0.6742 1.1664 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5143 0.8897 29 1 -0.3634 0.5133 -0.8903 30 1 1.7147 -0.1844 -2.1398 31 1 1.6442 -1.7374 -1.2721 32 1 3.4983 -2.1874 -2.7922 33 1 4.1206 -2.5824 -5.0776 34 1 4.7348 -3.8340 -3.9618 35 1 5.7452 -3.0502 -6.6899 36 1 5.8276 -4.6370 -5.8564 37 1 8.6953 -4.0135 -3.9287 38 1 10.9344 -2.1640 -4.6813 39 1 7.8506 -1.6740 -3.7435 40 1 7.0959 -1.0400 -5.2369 41 1 3.6644 -2.4893 0.0872 42 1 5.1077 -1.4472 0.1412 43 1 3.8192 0.3090 1.2957 44 1 3.7100 -1.2201 2.2006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332094607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:06 Heat of formation + Delta-G solvation = -132.328448 kcal Electronic energy + Delta-G solvation = -25277.128099 eV Core-core repulsion = 21615.040505 eV Total energy + Delta-G solvation = -3662.087594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15974 -39.14074 -37.36000 -34.97738 -34.23332 -32.98527 -32.19100 -31.46928 -29.81021 -27.94795 -27.60262 -25.17330 -23.90669 -22.86613 -21.96731 -20.55618 -19.64226 -19.40851 -17.60951 -17.06356 -16.48948 -16.28065 -15.61649 -15.19589 -15.04213 -14.95811 -14.40107 -14.27416 -14.01553 -13.65189 -13.17211 -12.97452 -12.82081 -12.71766 -12.56092 -12.12813 -12.01128 -11.67128 -11.60951 -11.40455 -11.25704 -11.07737 -11.03063 -10.79573 -10.60364 -10.51003 -10.48638 -10.18075 -9.88135 -9.53386 -9.36760 -8.84204 -8.68617 -8.35935 -7.68674 -6.29308 -4.38576 3.07643 3.20586 3.28226 3.30728 3.58338 3.72610 4.24643 4.40700 4.50837 4.68251 4.72233 4.94862 4.98398 5.07166 5.15767 5.25781 5.32086 5.40089 5.41449 5.50754 5.63768 5.65062 5.74160 5.76804 5.81118 5.92710 5.99615 6.02544 6.11463 6.20467 6.50892 6.70365 6.78042 6.87167 6.96379 7.06398 7.23188 7.34287 7.63902 7.74021 8.01324 8.53326 8.66182 9.13050 9.30312 9.44318 10.77935 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.033107 B = 0.003218 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.540879 B = 8698.021408 C = 8965.308300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.061 0.939 4 C -0.157 4.157 5 C 0.165 3.835 6 H 0.086 0.914 7 N -0.747 5.747 8 C 0.717 3.283 9 O -0.598 6.598 10 N -0.627 5.627 11 C 0.106 3.894 12 C -0.116 4.116 13 C 0.248 3.752 14 O -0.585 6.585 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.071 3.929 18 N -0.892 5.892 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.113 3.887 24 C -0.168 4.168 25 C 0.066 3.934 26 O -0.382 6.382 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.392 0.608 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.385 0.615 38 H 0.271 0.729 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 2.627 7.029 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.079 0.921 4 C -0.195 4.195 5 C 0.059 3.941 6 H 0.105 0.895 7 N -0.402 5.402 8 C 0.419 3.581 9 O -0.477 6.477 10 N -0.364 5.364 11 C -0.018 4.018 12 C -0.154 4.154 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.577 4.577 16 H 0.085 0.915 17 C -0.133 4.133 18 N -0.531 5.531 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.009 4.009 24 C -0.207 4.207 25 C -0.011 4.011 26 O -0.301 6.301 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.226 0.774 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.236 0.764 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.327 2.993 7.573 18.245 hybrid contribution 1.208 0.225 -1.034 1.606 sum -15.119 3.218 6.539 16.784 Atomic orbital electron populations 1.21760 0.92884 1.02995 1.02460 1.22022 0.95106 0.95116 0.84559 0.92148 1.22537 0.95107 1.02606 0.99259 1.20690 0.92449 0.96356 0.84580 0.89547 1.45182 1.15466 1.45040 1.34548 1.15533 0.81422 0.81354 0.79832 1.90875 1.57191 1.38132 1.61463 1.47908 1.18327 1.39780 1.30346 1.21922 0.94839 0.90493 0.94535 1.22595 0.95495 1.00843 0.96475 1.19623 0.89535 0.83346 0.86741 1.86069 1.39407 1.50925 1.63018 1.21482 0.95946 1.46637 0.93686 0.91470 1.25093 0.98205 0.93801 0.96175 1.69644 1.18904 1.46084 1.18432 0.86387 0.79860 0.78636 0.82019 1.20435 1.20993 1.19669 1.23105 0.80440 1.00571 0.96765 1.22655 1.02615 1.00591 0.94875 1.22550 0.80369 0.99879 0.98326 1.87915 1.21386 1.77958 1.42850 0.91750 0.91763 0.91046 0.90275 0.90514 0.77391 0.93206 0.92684 0.90447 0.90791 0.76411 0.91919 0.89985 0.92552 0.91013 0.89887 0.92925 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.56 37.15 0.36 -0.71 16 2 C 0.09 0.86 3.26 -26.69 -0.09 0.77 16 3 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.16 -1.54 4.89 -26.60 -0.13 -1.67 16 5 C 0.17 2.17 2.54 -67.75 -0.17 2.00 16 6 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 7 N -0.75 -11.30 5.04 -58.50 -0.30 -11.59 16 8 C 0.72 14.58 8.46 -86.92 -0.74 13.85 16 9 O -0.60 -14.40 16.26 5.29 0.09 -14.32 16 10 N -0.63 -13.03 3.33 -176.22 -0.59 -13.62 16 11 C 0.11 1.83 6.15 -3.06 -0.02 1.81 16 12 C -0.12 -2.27 6.13 -24.90 -0.15 -2.43 16 13 C 0.25 5.99 0.89 -89.62 -0.08 5.91 16 14 O -0.58 -14.99 13.19 -35.23 -0.46 -15.46 16 15 C -0.54 -13.93 8.26 -34.44 -0.28 -14.22 16 16 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 17 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 18 N -0.89 -23.81 10.70 55.43 0.59 -23.21 16 19 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 C 0.11 2.75 5.50 -2.52 -0.01 2.73 16 24 C -0.17 -2.14 5.72 -26.59 -0.15 -2.30 16 25 C 0.07 0.71 6.84 37.21 0.25 0.97 16 26 O -0.38 -4.32 10.41 -35.23 -0.37 -4.68 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.39 5.03 7.59 -40.82 -0.31 4.72 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.38 10.23 7.18 45.56 0.33 10.56 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.08 2.25 7.50 -51.93 -0.39 1.86 16 40 H 0.06 1.41 8.03 -51.93 -0.42 0.99 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 351.12 15.07 5.29 5.29 Total: -1.00 -30.25 351.12 -8.71 -38.96 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.64 Total: 14.94 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -1.31 Total: 8.45 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.29 Total: -48.42 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.75 Total: -34.46 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.25 -8.71 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332094607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.365 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds