Wall clock time and date at job start Fri Apr 10 2020 20:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20828 * 120.00141 * 2 1 4 4 O 1.34228 * 120.00526 * 180.02562 * 2 1 3 5 5 C 1.45194 * 117.00493 * 179.97438 * 4 2 1 6 6 C 1.53074 * 109.44192 * 89.78993 * 5 4 2 7 7 C 1.53200 * 109.29270 * 181.23637 * 6 5 4 8 8 N 1.46924 * 108.89456 * 305.57637 * 7 6 5 9 9 C 1.34775 * 120.63159 * 233.55608 * 8 7 6 10 10 O 1.21585 * 119.99810 * 354.96981 * 9 8 7 11 11 N 1.34773 * 119.99548 * 174.96204 * 9 8 7 12 12 C 1.46509 * 119.99865 * 185.07796 * 11 9 8 13 13 C 1.52996 * 109.47132 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46695 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47124 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00454 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99785 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00360 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47433 * 59.99826 * 19 17 15 21 21 H 1.48504 * 109.47367 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46969 * 299.99710 * 19 17 15 23 23 C 1.46925 * 118.73744 * 53.54010 * 8 7 6 24 24 C 1.53041 * 109.46020 * 209.99557 * 5 4 2 25 25 H 1.08998 * 109.46881 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46827 * 299.99307 * 1 2 3 27 27 H 1.08999 * 109.47336 * 59.99334 * 1 2 3 28 28 H 1.08997 * 109.45810 * 329.96929 * 5 4 2 29 29 H 1.08999 * 109.39304 * 61.36255 * 6 5 4 30 30 H 1.09001 * 109.62443 * 301.25113 * 6 5 4 31 31 H 1.09003 * 109.58604 * 185.71544 * 7 6 5 32 32 H 1.09006 * 109.58223 * 65.43764 * 7 6 5 33 33 H 0.97000 * 120.00552 * 5.07719 * 11 9 8 34 34 H 1.09005 * 109.46845 * 300.00179 * 12 11 9 35 35 H 1.09003 * 109.47202 * 59.99741 * 12 11 9 36 36 H 1.08989 * 109.47520 * 299.99640 * 13 12 11 37 37 H 1.09002 * 109.46741 * 60.00308 * 13 12 11 38 38 H 1.08998 * 109.47694 * 300.00233 * 14 13 12 39 39 H 1.08998 * 109.47593 * 60.00125 * 14 13 12 40 40 H 0.96996 * 119.99972 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.59207 * 66.17170 * 23 8 7 42 42 H 1.09002 * 109.59022 * 186.46095 * 23 8 7 43 43 H 1.08996 * 109.49614 * 58.67368 * 24 5 4 44 44 H 1.08998 * 109.52116 * 298.59270 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1624 -0.0005 5 6 3.6282 -1.0864 -0.0011 6 6 4.1373 -1.0548 1.4422 7 6 5.6652 -0.9434 1.4376 8 7 6.2193 -2.0336 0.6232 9 6 7.1574 -2.8593 1.1278 10 8 7.6194 -2.6511 2.2331 11 7 7.5831 -3.9157 0.4073 12 6 8.5193 -4.8756 0.9978 13 6 8.8397 -5.9693 -0.0230 14 6 9.8179 -6.9714 0.5935 15 6 10.1341 -8.0484 -0.4121 16 1 9.6828 -8.0207 -1.3929 17 6 10.9994 -9.0691 -0.0800 18 7 11.5493 -9.1026 1.1142 19 14 11.3918 -10.4037 -1.3266 20 1 12.0061 -9.7904 -2.5316 21 1 12.3411 -11.3764 -0.7283 22 1 10.1406 -11.1050 -1.7114 23 6 5.7309 -2.2068 -0.7516 24 6 4.2025 -2.3075 -0.7230 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 3.9440 -0.1787 -0.5153 29 1 3.8409 -1.9722 1.9507 30 1 3.7115 -0.1964 1.9618 31 1 6.0404 -1.0225 2.4580 32 1 5.9604 0.0162 1.0132 33 1 7.2698 -4.0405 -0.5021 34 1 9.4382 -4.3610 1.2789 35 1 8.0691 -5.3248 1.8830 36 1 7.9212 -6.4840 -0.3045 37 1 9.2903 -5.5197 -0.9078 38 1 10.7365 -6.4565 0.8748 39 1 9.3679 -7.4210 1.4786 40 1 12.1583 -9.8205 1.3477 41 1 6.0292 -1.3502 -1.3561 42 1 6.1513 -3.1182 -1.1767 43 1 3.8208 -2.3397 -1.7434 44 1 3.9075 -3.2146 -0.1954 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753607039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:14 Heat of formation + Delta-G solvation = -129.771334 kcal Electronic energy + Delta-G solvation = -23879.654088 eV Core-core repulsion = 20217.677379 eV Total energy + Delta-G solvation = -3661.976709 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.09345 -40.20399 -37.88627 -36.39414 -35.41411 -33.46600 -32.54274 -31.64597 -30.87253 -30.41580 -26.83368 -25.28838 -23.84848 -22.91536 -21.84875 -21.06604 -20.62625 -19.52264 -18.33645 -17.99498 -16.68437 -16.51126 -16.44802 -15.98354 -15.69280 -14.82338 -14.65127 -14.47077 -14.29680 -14.14356 -13.99149 -13.76163 -13.34189 -13.03344 -12.96216 -12.74416 -12.26604 -12.19366 -11.91412 -11.79935 -11.71797 -11.65981 -11.14751 -10.92179 -10.88607 -10.71902 -10.62183 -10.59267 -10.06498 -9.86107 -9.44332 -9.13740 -9.02839 -8.55536 -8.36801 -6.01490 -4.04730 1.78424 2.26335 2.60806 3.29145 3.31876 3.36766 3.38472 3.89120 4.18959 4.25109 4.30027 4.44364 4.57569 4.66629 4.68251 4.79412 4.85945 5.02406 5.08503 5.15671 5.29219 5.34060 5.37827 5.41669 5.58513 5.61819 5.72021 5.77009 5.81355 6.14336 6.17934 6.30231 6.51954 6.61837 6.76382 6.97964 7.01798 7.34680 7.63676 7.76737 7.97176 8.02064 8.37928 8.68476 9.01676 9.59254 11.09718 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.002258 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.955432 B =12395.716674 C =12992.642782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.458 3.542 3 O -0.515 6.515 4 O -0.352 6.352 5 C 0.091 3.909 6 C -0.150 4.150 7 C 0.135 3.865 8 N -0.637 5.637 9 C 0.706 3.294 10 O -0.588 6.588 11 N -0.741 5.741 12 C 0.133 3.867 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.116 3.884 24 C -0.131 4.131 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.393 0.607 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.231 18.414 -4.564 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.302 3.698 3 O -0.403 6.403 4 O -0.269 6.269 5 C 0.036 3.964 6 C -0.189 4.189 7 C 0.012 3.988 8 N -0.376 5.376 9 C 0.407 3.593 10 O -0.466 6.466 11 N -0.398 5.398 12 C 0.010 3.990 13 C -0.158 4.158 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.532 5.532 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.008 4.008 24 C -0.170 4.170 25 H 0.110 0.890 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.228 0.772 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.514 18.714 -3.607 28.742 hybrid contribution 0.098 -0.770 -1.141 1.380 sum -21.416 17.944 -4.748 28.341 Atomic orbital electron populations 1.21601 0.87195 1.05851 1.05822 1.23880 0.92205 0.81815 0.71904 1.90694 1.70824 1.33091 1.45734 1.86587 1.22271 1.34705 1.83332 1.22759 0.75944 1.00245 0.97442 1.22379 0.96620 1.03922 0.95933 1.21336 0.90850 0.88796 0.97835 1.47323 1.42691 1.33395 1.14158 1.15892 0.79515 0.79674 0.84217 1.90912 1.60350 1.74885 1.20480 1.45573 1.50424 1.26346 1.17425 1.21539 0.91486 0.88825 0.97113 1.21888 1.00806 0.95733 0.97389 1.19023 0.93469 0.92607 0.96251 1.21160 1.26802 1.08592 0.99560 0.92717 1.25034 0.96019 0.98110 0.95344 1.69956 1.30628 1.33038 1.19604 0.86636 0.78172 0.81586 0.81445 1.20266 1.21284 1.20259 1.21577 0.92698 1.02864 0.83662 1.22031 0.95199 0.98029 1.01727 0.89000 0.87732 0.87743 0.89441 0.90225 0.90134 0.88016 0.91459 0.77150 0.91821 0.91976 0.92797 0.92778 0.96220 0.96241 0.92868 0.90865 0.89164 0.89574 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 10.42 36.01 0.38 -0.17 16 2 C 0.46 3.72 8.04 36.01 0.29 4.01 16 3 O -0.52 -5.85 16.32 -18.75 -0.31 -6.16 16 4 O -0.35 -3.01 9.88 -39.25 -0.39 -3.40 16 5 C 0.09 0.77 2.41 -26.67 -0.06 0.70 16 6 C -0.15 -1.35 5.73 -26.59 -0.15 -1.51 16 7 C 0.14 1.40 6.41 -3.71 -0.02 1.38 16 8 N -0.64 -7.33 2.97 -178.49 -0.53 -7.86 16 9 C 0.71 11.01 8.30 -86.92 -0.72 10.28 16 10 O -0.59 -11.62 15.79 5.29 0.08 -11.54 16 11 N -0.74 -10.89 5.47 -65.22 -0.36 -11.24 16 12 C 0.13 2.38 5.68 -4.04 -0.02 2.36 16 13 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 19 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 C 0.12 0.93 6.43 -3.71 -0.02 0.91 16 24 C -0.13 -0.96 5.75 -26.61 -0.15 -1.11 16 25 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.79 7.16 -51.93 -0.37 0.41 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.10 1.23 7.03 -51.93 -0.37 0.86 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.39 4.61 5.93 -40.82 -0.24 4.37 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.00 8.14 -51.94 -0.42 0.58 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.65 5.56 -51.93 -0.29 0.36 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 362.39 15.07 5.46 5.46 Total: -1.00 -35.08 362.39 -8.66 -43.74 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.15 Total: -0.87 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.19 Total: 1.52 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.15 Total: -45.15 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.61 Total: -21.10 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.08 -8.66 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753607039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.031 kcal (2) G-P(sol) polarization free energy of solvation -35.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds