Wall clock time and date at job start Fri Apr 10 2020 20:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20828 * 120.00141 * 2 1 4 4 O 1.34228 * 120.00526 * 180.02562 * 2 1 3 5 5 C 1.45194 * 117.00493 * 179.97438 * 4 2 1 6 6 C 1.53074 * 109.44192 * 89.78993 * 5 4 2 7 7 C 1.53200 * 109.29270 * 181.23637 * 6 5 4 8 8 N 1.46924 * 108.89456 * 305.57637 * 7 6 5 9 9 C 1.34775 * 120.63159 * 233.55608 * 8 7 6 10 10 O 1.21585 * 119.99810 * 354.96981 * 9 8 7 11 11 N 1.34773 * 119.99548 * 174.96204 * 9 8 7 12 12 C 1.46509 * 119.99865 * 185.07796 * 11 9 8 13 13 C 1.52996 * 109.47132 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.46695 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47124 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00454 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99785 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00360 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47433 * 59.99826 * 19 17 15 21 21 H 1.48504 * 109.47367 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46969 * 299.99710 * 19 17 15 23 23 C 1.46925 * 118.73744 * 53.54010 * 8 7 6 24 24 C 1.53041 * 109.46020 * 209.99557 * 5 4 2 25 25 H 1.08998 * 109.46881 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46827 * 299.99307 * 1 2 3 27 27 H 1.08999 * 109.47336 * 59.99334 * 1 2 3 28 28 H 1.08997 * 109.45810 * 329.96929 * 5 4 2 29 29 H 1.08999 * 109.39304 * 61.36255 * 6 5 4 30 30 H 1.09001 * 109.62443 * 301.25113 * 6 5 4 31 31 H 1.09003 * 109.58604 * 185.71544 * 7 6 5 32 32 H 1.09006 * 109.58223 * 65.43764 * 7 6 5 33 33 H 0.97000 * 120.00552 * 5.07719 * 11 9 8 34 34 H 1.09005 * 109.46845 * 300.00179 * 12 11 9 35 35 H 1.09003 * 109.47202 * 59.99741 * 12 11 9 36 36 H 1.08989 * 109.47520 * 299.99640 * 13 12 11 37 37 H 1.09002 * 109.46741 * 60.00308 * 13 12 11 38 38 H 1.08998 * 109.47694 * 300.00233 * 14 13 12 39 39 H 1.08998 * 109.47593 * 60.00125 * 14 13 12 40 40 H 0.96996 * 119.99972 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.59207 * 66.17170 * 23 8 7 42 42 H 1.09002 * 109.59022 * 186.46095 * 23 8 7 43 43 H 1.08996 * 109.49614 * 58.67368 * 24 5 4 44 44 H 1.08998 * 109.52116 * 298.59270 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1624 -0.0005 5 6 3.6282 -1.0864 -0.0011 6 6 4.1373 -1.0548 1.4422 7 6 5.6652 -0.9434 1.4376 8 7 6.2193 -2.0336 0.6232 9 6 7.1574 -2.8593 1.1278 10 8 7.6194 -2.6511 2.2331 11 7 7.5831 -3.9157 0.4073 12 6 8.5193 -4.8756 0.9978 13 6 8.8397 -5.9693 -0.0230 14 6 9.8179 -6.9714 0.5935 15 6 10.1341 -8.0484 -0.4121 16 1 9.6828 -8.0207 -1.3929 17 6 10.9994 -9.0691 -0.0800 18 7 11.5493 -9.1026 1.1142 19 14 11.3918 -10.4037 -1.3266 20 1 12.0061 -9.7904 -2.5316 21 1 12.3411 -11.3764 -0.7283 22 1 10.1406 -11.1050 -1.7114 23 6 5.7309 -2.2068 -0.7516 24 6 4.2025 -2.3075 -0.7230 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 3.9440 -0.1787 -0.5153 29 1 3.8409 -1.9722 1.9507 30 1 3.7115 -0.1964 1.9618 31 1 6.0404 -1.0225 2.4580 32 1 5.9604 0.0162 1.0132 33 1 7.2698 -4.0405 -0.5021 34 1 9.4382 -4.3610 1.2789 35 1 8.0691 -5.3248 1.8830 36 1 7.9212 -6.4840 -0.3045 37 1 9.2903 -5.5197 -0.9078 38 1 10.7365 -6.4565 0.8748 39 1 9.3679 -7.4210 1.4786 40 1 12.1583 -9.8205 1.3477 41 1 6.0292 -1.3502 -1.3561 42 1 6.1513 -3.1182 -1.1767 43 1 3.8208 -2.3397 -1.7434 44 1 3.9075 -3.2146 -0.1954 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753607039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:14 Heat of formation + Delta-G solvation = -152.306005 kcal Electronic energy + Delta-G solvation = -23880.631264 eV Core-core repulsion = 20217.677379 eV Total energy + Delta-G solvation = -3662.953886 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85728 -41.21138 -38.78680 -37.26260 -36.88647 -35.25991 -33.70148 -32.75380 -32.04767 -30.92497 -28.57023 -26.28053 -25.02096 -24.21698 -22.65956 -22.29374 -21.82278 -20.59807 -19.37104 -18.69647 -18.47457 -17.46540 -17.20754 -17.09559 -16.84475 -16.48346 -15.91703 -15.58934 -15.50097 -14.92986 -14.87515 -14.56427 -14.35530 -14.24633 -13.74844 -13.56762 -13.49071 -13.34265 -13.26092 -12.91843 -12.70399 -12.63291 -12.53545 -12.38681 -12.37328 -11.86370 -11.65588 -11.62406 -11.57405 -11.34337 -11.24852 -11.10534 -10.53171 -10.28709 -9.61909 -8.17680 -6.29226 1.18167 1.42801 1.46083 1.51750 1.54342 1.71461 2.08615 2.43178 2.87137 3.15920 3.53078 3.58896 3.69089 3.89040 3.93719 4.14002 4.19994 4.23994 4.27355 4.37566 4.52096 4.57048 4.58116 4.59315 4.65917 4.71330 4.79913 4.94386 4.96022 4.97111 5.00895 5.12022 5.18032 5.43313 5.46186 5.54395 5.54945 5.72639 5.83142 5.86100 6.23851 6.73540 6.87104 6.91692 7.40143 7.48656 8.94185 Molecular weight = 298.17amu Principal moments of inertia in cm(-1) A = 0.030662 B = 0.002258 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.955432 B =12395.716674 C =12992.642782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.454 3.546 3 O -0.553 6.553 4 O -0.354 6.354 5 C 0.089 3.911 6 C -0.141 4.141 7 C 0.134 3.866 8 N -0.629 5.629 9 C 0.701 3.299 10 O -0.637 6.637 11 N -0.729 5.729 12 C 0.148 3.852 13 C -0.100 4.100 14 C 0.023 3.977 15 C -0.540 4.540 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.110 3.890 24 C -0.123 4.123 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.410 0.590 34 H 0.046 0.954 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.068 0.932 38 H -0.009 1.009 39 H -0.008 1.008 40 H 0.263 0.737 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.149 18.432 -7.260 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.300 3.700 3 O -0.444 6.444 4 O -0.271 6.271 5 C 0.034 3.966 6 C -0.179 4.179 7 C 0.011 3.989 8 N -0.366 5.366 9 C 0.403 3.597 10 O -0.519 6.519 11 N -0.387 5.387 12 C 0.024 3.976 13 C -0.138 4.138 14 C -0.015 4.015 15 C -0.578 4.578 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.012 4.012 24 C -0.162 4.162 25 H 0.126 0.874 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.010 0.990 39 H 0.011 0.989 40 H 0.071 0.929 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.128 0.872 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.495 18.748 -6.366 30.725 hybrid contribution 0.642 -0.705 -0.273 0.992 sum -22.853 18.043 -6.640 29.865 Atomic orbital electron populations 1.21745 0.83712 1.07335 1.07095 1.24797 0.93721 0.81010 0.70431 1.90680 1.71842 1.34210 1.47640 1.86612 1.22121 1.35139 1.83229 1.22748 0.76336 1.00749 0.96740 1.22257 0.95448 1.03483 0.96727 1.21384 0.91665 0.89049 0.96779 1.47356 1.41287 1.32403 1.15598 1.16050 0.79994 0.80048 0.83638 1.90882 1.62184 1.76101 1.22691 1.45208 1.49798 1.25580 1.18127 1.21104 0.91372 0.88815 0.96321 1.21583 0.99908 0.94761 0.97502 1.18942 0.93601 0.93492 0.95415 1.21650 1.26685 1.09082 1.00390 0.91393 1.26046 0.95921 1.00921 0.97396 1.70112 1.31484 1.34074 1.21878 0.85455 0.78275 0.78230 0.78794 1.19025 1.21321 1.18940 1.21891 0.93264 1.04443 0.81628 1.21981 0.94389 0.96970 1.02816 0.87438 0.86510 0.86182 0.89711 0.91100 0.90057 0.90207 0.89957 0.75086 0.93584 0.93487 0.91185 0.91301 0.99018 0.98948 0.92864 0.88774 0.87938 0.87220 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 10.42 71.24 0.74 0.04 16 2 C 0.45 6.68 8.04 71.24 0.57 7.25 16 3 O -0.55 -12.08 16.32 21.96 0.36 -11.72 16 4 O -0.35 -5.44 9.88 -51.40 -0.51 -5.94 16 5 C 0.09 1.36 2.41 30.63 0.07 1.44 16 6 C -0.14 -2.46 5.73 30.69 0.18 -2.28 16 7 C 0.13 2.75 6.41 86.37 0.55 3.30 16 8 N -0.63 -13.81 2.97 -836.88 -2.49 -16.30 16 9 C 0.70 21.70 8.30 179.06 1.49 23.19 16 10 O -0.64 -25.91 15.79 -3.99 -0.06 -25.97 16 11 N -0.73 -20.67 5.47 -478.52 -2.62 -23.28 16 12 C 0.15 5.34 5.68 86.38 0.49 5.83 16 13 C -0.10 -3.79 5.27 30.59 0.16 -3.63 16 14 C 0.02 1.21 4.97 29.85 0.15 1.35 16 15 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 16 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 17 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 18 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 19 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 C 0.11 1.47 6.43 86.36 0.56 2.03 16 24 C -0.12 -1.48 5.75 30.67 0.18 -1.31 16 25 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.08 1.38 7.16 -2.39 -0.02 1.36 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 2.01 7.03 -2.39 -0.02 1.99 16 32 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.41 8.61 5.93 -92.71 -0.55 8.06 16 34 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.13 5.56 -2.39 -0.01 1.12 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -77.88 362.39 3.26 -74.62 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.44 Total: 12.24 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 5.83 Total: 7.70 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -4.82 Total: -96.48 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.21 Total: -43.64 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -77.88 3.26 -74.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753607039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.690 kcal (2) G-P(sol) polarization free energy of solvation -77.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds