Wall clock time and date at job start Fri Apr 10 2020 20:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48498 * 109.47007 * 270.00035 * 3 2 1 5 5 H 1.48505 * 109.46844 * 29.99734 * 3 2 1 6 6 H 1.48499 * 109.47285 * 149.99695 * 3 2 1 7 7 C 1.37885 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99589 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99674 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46653 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.46182 * 295.02705 * 10 9 7 12 12 C 1.53197 * 109.31238 * 178.59839 * 11 10 9 13 13 N 1.46924 * 108.76194 * 54.65843 * 12 11 10 14 14 C 1.34773 * 120.63245 * 126.36027 * 13 12 11 15 15 O 1.21586 * 120.00425 * 174.98444 * 14 13 12 16 16 N 1.34786 * 119.99771 * 354.98598 * 14 13 12 17 17 C 1.46497 * 120.00088 * 185.07115 * 16 14 13 18 18 H 1.09000 * 110.01731 * 325.70177 * 17 16 14 19 19 C 1.53873 * 110.03405 * 204.30884 * 17 16 14 20 20 C 1.54259 * 106.60063 * 240.71686 * 19 17 16 21 21 C 1.54894 * 104.19617 * 23.60866 * 20 19 17 22 22 H 1.09004 * 110.75326 * 80.37252 * 21 20 19 23 23 F 1.39902 * 110.75477 * 203.56013 * 21 20 19 24 24 C 1.54268 * 110.03147 * 87.09035 * 17 16 14 25 25 C 1.46925 * 118.74095 * 306.38432 * 13 12 11 26 26 C 1.53046 * 109.45922 * 174.97387 * 10 9 7 27 27 H 0.96993 * 120.00325 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47228 * 60.00778 * 9 7 2 29 29 H 1.08994 * 109.47380 * 300.00101 * 9 7 2 30 30 H 1.08998 * 109.46073 * 55.00670 * 10 9 7 31 31 H 1.08995 * 109.50059 * 298.56639 * 11 10 9 32 32 H 1.09007 * 109.49681 * 58.66552 * 11 10 9 33 33 H 1.08999 * 109.60042 * 294.87381 * 12 11 10 34 34 H 1.08996 * 109.70480 * 174.50908 * 12 11 10 35 35 H 0.97002 * 119.99917 * 5.07291 * 16 14 13 36 36 H 1.09005 * 110.03175 * 0.02562 * 19 17 16 37 37 H 1.09000 * 110.02883 * 121.38511 * 19 17 16 38 38 H 1.08997 * 110.48686 * 142.28647 * 20 19 17 39 39 H 1.09000 * 110.48783 * 264.93050 * 20 19 17 40 40 H 1.08998 * 110.49031 * 214.35292 * 24 17 16 41 41 H 1.09005 * 110.48619 * 336.99944 * 24 17 16 42 42 H 1.09002 * 109.58439 * 293.81860 * 25 13 12 43 43 H 1.08998 * 109.70748 * 173.46648 * 25 13 12 44 44 H 1.08999 * 109.49503 * 301.33833 * 26 10 9 45 45 H 1.08998 * 109.49385 * 61.43334 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 3.6155 -3.3198 1.3101 12 6 4.0974 -4.7740 1.2928 13 7 5.5423 -4.7899 1.0273 14 6 6.3854 -5.4388 1.8546 15 8 7.5661 -5.5224 1.5763 16 7 5.9197 -5.9953 2.9904 17 6 6.8513 -6.6035 3.9436 18 1 7.6825 -7.0647 3.4104 19 6 6.1214 -7.6574 4.7947 20 6 6.2303 -7.1919 6.2613 21 6 6.4538 -5.6626 6.1589 22 1 5.5096 -5.1446 5.9904 23 9 7.0861 -5.1758 7.3081 24 6 7.3793 -5.5341 4.9220 25 6 6.0509 -4.0843 -0.1569 26 6 5.5469 -2.6381 -0.1236 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8912 29 1 3.8752 -0.6803 -0.8888 30 1 3.5873 -3.1759 -0.8394 31 1 4.0699 -2.7958 2.1508 32 1 2.5303 -3.2976 1.4105 33 1 3.5758 -5.3227 0.5086 34 1 3.8981 -5.2387 2.2584 35 1 4.9678 -5.9932 3.1767 36 1 5.0741 -7.7166 4.4982 37 1 6.5985 -8.6300 4.6745 38 1 5.3073 -7.4073 6.7995 39 1 7.0789 -7.6694 6.7511 40 1 8.4133 -5.7444 5.1954 41 1 7.2945 -4.5400 4.4828 42 1 5.6886 -4.5769 -1.0593 43 1 7.1408 -4.0916 -0.1492 44 1 5.8365 -2.1306 -1.0436 45 1 5.9829 -2.1204 0.7308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335428362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:39:57 Heat of formation + Delta-G solvation = -98.023962 kcal Electronic energy + Delta-G solvation = -24870.354942 eV Core-core repulsion = 21222.127692 eV Total energy + Delta-G solvation = -3648.227250 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.180 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.79098 -40.50191 -38.41007 -37.10116 -34.18434 -33.44419 -32.07064 -30.72114 -29.03298 -28.67219 -27.37909 -24.59763 -23.00543 -21.99190 -21.31886 -20.75093 -19.92356 -19.27986 -17.97732 -17.19476 -16.74348 -16.32095 -16.03828 -15.33444 -14.89412 -14.82588 -14.37776 -14.17270 -13.93041 -13.77998 -13.61655 -13.25065 -13.04369 -13.01382 -12.57887 -12.33851 -12.19152 -12.01780 -11.77657 -11.47655 -11.28650 -11.16783 -10.93294 -10.91712 -10.87338 -10.68064 -10.35695 -10.11235 -9.80751 -9.73176 -9.52064 -9.22912 -9.09541 -8.56537 -8.34101 -6.07717 -4.05200 2.65568 3.22261 3.28428 3.36554 3.40180 3.83654 3.94537 4.11934 4.26542 4.42689 4.57332 4.81268 4.91667 4.99605 5.02391 5.19550 5.23838 5.25768 5.32759 5.38618 5.40200 5.42158 5.49933 5.60273 5.63743 5.72353 5.83264 5.89954 5.90409 6.01286 6.24098 6.26942 6.38181 6.45296 6.54410 6.76318 6.83135 6.92694 7.00801 7.22372 7.41429 7.76621 7.95116 8.49857 8.61799 8.96514 9.55661 11.05448 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.003409 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.101516 B = 8210.653416 C = 8894.011896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.516 4.516 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.071 4.071 11 C -0.120 4.120 12 C 0.110 3.890 13 N -0.623 5.623 14 C 0.708 3.292 15 O -0.598 6.598 16 N -0.745 5.745 17 C 0.161 3.839 18 H 0.098 0.902 19 C -0.128 4.128 20 C -0.148 4.148 21 C 0.081 3.919 22 H 0.092 0.908 23 F -0.211 7.211 24 C -0.159 4.159 25 C 0.131 3.869 26 C -0.133 4.133 27 H 0.262 0.738 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.645 -15.341 9.330 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.091 0.909 9 C -0.047 4.047 10 C -0.090 4.090 11 C -0.158 4.158 12 C -0.013 4.013 13 N -0.359 5.359 14 C 0.409 3.591 15 O -0.477 6.477 16 N -0.403 5.403 17 C 0.055 3.945 18 H 0.116 0.884 19 C -0.166 4.166 20 C -0.186 4.186 21 C 0.045 3.955 22 H 0.110 0.890 23 F -0.192 7.192 24 C -0.198 4.198 25 C 0.008 3.992 26 C -0.172 4.172 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.030 0.970 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.089 0.911 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.369 -15.266 9.147 21.672 hybrid contribution -0.253 1.108 0.158 1.147 sum 12.116 -14.158 9.305 20.828 Atomic orbital electron populations 1.69903 1.06276 1.26861 1.51282 1.25025 0.94686 0.99123 0.94643 0.86818 0.80382 0.83810 0.78493 1.20360 1.21487 1.19077 1.21130 0.89414 0.94293 1.50594 0.90873 1.19621 0.97155 0.91673 0.96239 1.20988 0.92294 0.98990 0.96703 1.21906 1.02613 0.92548 0.98725 1.21797 0.79925 0.99267 1.00291 1.47358 1.06909 1.54559 1.27105 1.15846 0.84869 0.78472 0.79877 1.90880 1.15233 1.65639 1.75911 1.45517 1.10358 1.63588 1.20875 1.21272 0.92572 0.91945 0.88696 0.88384 1.22398 1.01618 0.98963 0.93670 1.22934 1.03589 0.94680 0.97351 1.22674 0.96189 0.94703 0.81963 0.88973 1.92801 1.84361 1.89571 1.52458 1.23424 1.00060 1.01281 0.95049 1.21510 0.99883 0.92053 0.85752 1.22088 0.97863 0.95051 1.02150 0.92782 0.96716 0.97012 0.91723 0.92366 0.89245 0.91335 0.91470 0.76655 0.90389 0.89867 0.90178 0.89972 0.89507 0.89873 0.91934 0.89572 0.91083 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 2 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -13.85 8.94 -34.44 -0.31 -14.16 16 8 H 0.07 2.08 7.30 -52.49 -0.38 1.70 16 9 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 10 C -0.07 -1.28 2.10 -90.57 -0.19 -1.47 16 11 C -0.12 -1.92 5.19 -26.61 -0.14 -2.06 16 12 C 0.11 1.38 6.43 -3.71 -0.02 1.36 16 13 N -0.62 -8.62 2.97 -178.50 -0.53 -9.15 16 14 C 0.71 10.12 8.29 -86.91 -0.72 9.40 16 15 O -0.60 -10.53 15.42 5.29 0.08 -10.45 16 16 N -0.74 -7.84 4.95 -57.58 -0.29 -8.13 16 17 C 0.16 1.47 3.27 -66.81 -0.22 1.25 16 18 H 0.10 1.04 7.52 -51.93 -0.39 0.65 16 19 C -0.13 -0.79 6.57 -25.62 -0.17 -0.96 16 20 C -0.15 -0.95 6.63 -25.07 -0.17 -1.11 16 21 C 0.08 0.70 4.70 -24.67 -0.12 0.58 16 22 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 23 F -0.21 -2.37 17.22 2.25 0.04 -2.33 16 24 C -0.16 -1.53 6.35 -25.00 -0.16 -1.69 16 25 C 0.13 1.86 6.41 -3.71 -0.02 1.83 16 26 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.59 6.91 -51.93 -0.36 1.23 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.66 5.56 -51.93 -0.29 0.37 16 35 H 0.40 3.40 5.76 -40.82 -0.24 3.17 16 36 H 0.08 0.42 7.61 -51.93 -0.40 0.03 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 1.27 7.04 -51.93 -0.37 0.91 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -32.04 350.38 -9.30 -41.34 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.42 Total: 0.85 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.57 Total: -7.77 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.04 Total: -43.61 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.08 Total: -10.45 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.04 -9.30 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335428362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.687 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds