Wall clock time and date at job start Fri Apr 10 2020 20:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00164 * 2 1 4 4 H 1.48498 * 109.47007 * 270.00035 * 3 2 1 5 5 H 1.48505 * 109.46844 * 29.99734 * 3 2 1 6 6 H 1.48499 * 109.47285 * 149.99695 * 3 2 1 7 7 C 1.37885 * 120.00148 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99589 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99674 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46653 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.46182 * 295.02705 * 10 9 7 12 12 C 1.53197 * 109.31238 * 178.59839 * 11 10 9 13 13 N 1.46924 * 108.76194 * 54.65843 * 12 11 10 14 14 C 1.34773 * 120.63245 * 126.36027 * 13 12 11 15 15 O 1.21586 * 120.00425 * 174.98444 * 14 13 12 16 16 N 1.34786 * 119.99771 * 354.98598 * 14 13 12 17 17 C 1.46497 * 120.00088 * 185.07115 * 16 14 13 18 18 H 1.09000 * 110.01731 * 325.70177 * 17 16 14 19 19 C 1.53873 * 110.03405 * 204.30884 * 17 16 14 20 20 C 1.54259 * 106.60063 * 240.71686 * 19 17 16 21 21 C 1.54894 * 104.19617 * 23.60866 * 20 19 17 22 22 H 1.09004 * 110.75326 * 80.37252 * 21 20 19 23 23 F 1.39902 * 110.75477 * 203.56013 * 21 20 19 24 24 C 1.54268 * 110.03147 * 87.09035 * 17 16 14 25 25 C 1.46925 * 118.74095 * 306.38432 * 13 12 11 26 26 C 1.53046 * 109.45922 * 174.97387 * 10 9 7 27 27 H 0.96993 * 120.00325 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47228 * 60.00778 * 9 7 2 29 29 H 1.08994 * 109.47380 * 300.00101 * 9 7 2 30 30 H 1.08998 * 109.46073 * 55.00670 * 10 9 7 31 31 H 1.08995 * 109.50059 * 298.56639 * 11 10 9 32 32 H 1.09007 * 109.49681 * 58.66552 * 11 10 9 33 33 H 1.08999 * 109.60042 * 294.87381 * 12 11 10 34 34 H 1.08996 * 109.70480 * 174.50908 * 12 11 10 35 35 H 0.97002 * 119.99917 * 5.07291 * 16 14 13 36 36 H 1.09005 * 110.03175 * 0.02562 * 19 17 16 37 37 H 1.09000 * 110.02883 * 121.38511 * 19 17 16 38 38 H 1.08997 * 110.48686 * 142.28647 * 20 19 17 39 39 H 1.09000 * 110.48783 * 264.93050 * 20 19 17 40 40 H 1.08998 * 110.49031 * 214.35292 * 24 17 16 41 41 H 1.09005 * 110.48619 * 336.99944 * 24 17 16 42 42 H 1.09002 * 109.58439 * 293.81860 * 25 13 12 43 43 H 1.08998 * 109.70748 * 173.46648 * 25 13 12 44 44 H 1.08999 * 109.49503 * 301.33833 * 26 10 9 45 45 H 1.08998 * 109.49385 * 61.43334 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 3.6155 -3.3198 1.3101 12 6 4.0974 -4.7740 1.2928 13 7 5.5423 -4.7899 1.0273 14 6 6.3854 -5.4388 1.8546 15 8 7.5661 -5.5224 1.5763 16 7 5.9197 -5.9953 2.9904 17 6 6.8513 -6.6035 3.9436 18 1 7.6825 -7.0647 3.4104 19 6 6.1214 -7.6574 4.7947 20 6 6.2303 -7.1919 6.2613 21 6 6.4538 -5.6626 6.1589 22 1 5.5096 -5.1446 5.9904 23 9 7.0861 -5.1758 7.3081 24 6 7.3793 -5.5341 4.9220 25 6 6.0509 -4.0843 -0.1569 26 6 5.5469 -2.6381 -0.1236 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8912 29 1 3.8752 -0.6803 -0.8888 30 1 3.5873 -3.1759 -0.8394 31 1 4.0699 -2.7958 2.1508 32 1 2.5303 -3.2976 1.4105 33 1 3.5758 -5.3227 0.5086 34 1 3.8981 -5.2387 2.2584 35 1 4.9678 -5.9932 3.1767 36 1 5.0741 -7.7166 4.4982 37 1 6.5985 -8.6300 4.6745 38 1 5.3073 -7.4073 6.7995 39 1 7.0789 -7.6694 6.7511 40 1 8.4133 -5.7444 5.1954 41 1 7.2945 -4.5400 4.4828 42 1 5.6886 -4.5769 -1.0593 43 1 7.1408 -4.0916 -0.1492 44 1 5.8365 -2.1306 -1.0436 45 1 5.9829 -2.1204 0.7308 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335428362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:39:56 Heat of formation + Delta-G solvation = -116.899440 kcal Electronic energy + Delta-G solvation = -24871.173444 eV Core-core repulsion = 21222.127692 eV Total energy + Delta-G solvation = -3649.045752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.57936 -41.56593 -39.38702 -38.19753 -35.68653 -34.62151 -33.78632 -31.89110 -30.32913 -29.63332 -28.23989 -26.10486 -24.21829 -23.39659 -22.08577 -21.71969 -21.09275 -20.45656 -19.12536 -18.74713 -17.96447 -17.20996 -16.85140 -16.45230 -16.32696 -15.86182 -15.56181 -15.35442 -15.24358 -14.90374 -14.69104 -14.35591 -14.30797 -14.15632 -14.03318 -13.53565 -13.41199 -13.05419 -12.89329 -12.76864 -12.42882 -12.38890 -12.14059 -11.98532 -11.86048 -11.70724 -11.63159 -11.52571 -11.34099 -11.27980 -11.02689 -10.91106 -10.70612 -10.21868 -9.45322 -8.24970 -6.25945 1.35405 1.37895 1.48225 1.65575 2.13016 2.37865 2.89091 3.11045 3.29719 3.48610 3.60273 3.89453 3.96074 3.99138 4.05649 4.19717 4.21565 4.35154 4.38468 4.41119 4.47945 4.54204 4.65204 4.70358 4.76303 4.82457 4.88983 4.94476 4.99813 5.03662 5.10483 5.18593 5.19530 5.24718 5.29895 5.35509 5.42617 5.59296 5.63921 5.74455 5.75558 5.99957 6.35182 6.81552 6.95302 7.38037 7.55193 8.91072 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.003409 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.101516 B = 8210.653416 C = 8894.011896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.513 4.513 8 H 0.045 0.955 9 C -0.008 4.008 10 C -0.069 4.069 11 C -0.115 4.115 12 C 0.119 3.881 13 N -0.625 5.625 14 C 0.704 3.296 15 O -0.634 6.634 16 N -0.731 5.731 17 C 0.160 3.840 18 H 0.083 0.917 19 C -0.117 4.117 20 C -0.139 4.139 21 C 0.076 3.924 22 H 0.100 0.900 23 F -0.227 7.227 24 C -0.158 4.158 25 C 0.135 3.865 26 C -0.123 4.123 27 H 0.263 0.737 28 H 0.010 0.990 29 H 0.013 0.987 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.407 0.593 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.459 -16.501 9.975 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.552 4.552 8 H 0.063 0.937 9 C -0.045 4.045 10 C -0.088 4.088 11 C -0.153 4.153 12 C -0.004 4.004 13 N -0.361 5.361 14 C 0.405 3.595 15 O -0.515 6.515 16 N -0.389 5.389 17 C 0.054 3.946 18 H 0.101 0.899 19 C -0.155 4.155 20 C -0.177 4.177 21 C 0.040 3.960 22 H 0.117 0.883 23 F -0.208 7.208 24 C -0.198 4.198 25 C 0.012 3.988 26 C -0.161 4.161 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.174 -16.446 9.813 23.244 hybrid contribution -0.527 1.440 -0.040 1.534 sum 12.648 -15.006 9.773 21.923 Atomic orbital electron populations 1.70043 1.08020 1.27778 1.53357 1.25886 0.95440 1.02968 0.94784 0.85820 0.79470 0.79378 0.78918 1.19526 1.21404 1.17647 1.21457 0.91689 0.93097 1.48914 0.93706 1.19591 0.94241 0.94843 0.95873 1.20909 0.94013 0.96180 0.97655 1.21782 1.01188 0.94947 0.97417 1.21768 0.79113 0.96908 1.02566 1.47381 1.07283 1.54420 1.27006 1.16028 0.84357 0.78549 0.80538 1.90857 1.16825 1.67026 1.76838 1.45451 1.11195 1.62519 1.19768 1.21367 0.92453 0.92349 0.88383 0.89882 1.22368 1.02232 0.98341 0.92602 1.22910 1.04603 0.92478 0.97689 1.22851 0.95824 0.96608 0.80747 0.88258 1.92769 1.84735 1.89982 1.53316 1.23365 1.00493 1.00137 0.95770 1.21440 0.99584 0.91222 0.86596 1.21965 0.95604 0.96241 1.02315 0.92778 0.97118 0.96874 0.92090 0.92985 0.91429 0.90238 0.88334 0.75303 0.88825 0.88358 0.88482 0.89673 0.89709 0.92282 0.90544 0.90092 0.90125 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 13.96 21.45 0.30 -57.84 16 2 C 0.01 0.32 5.47 84.66 0.46 0.79 16 3 Si 0.94 43.89 27.47 68.60 1.88 45.77 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 7 C -0.51 -27.89 8.94 25.60 0.23 -27.66 16 8 H 0.04 2.62 7.30 -2.91 -0.02 2.60 16 9 C -0.01 -0.36 3.52 29.85 0.10 -0.25 16 10 C -0.07 -2.42 2.10 -10.76 -0.02 -2.44 16 11 C -0.11 -3.60 5.19 30.67 0.16 -3.44 16 12 C 0.12 2.72 6.43 86.36 0.56 3.28 16 13 N -0.62 -16.15 2.97 -836.92 -2.49 -18.63 16 14 C 0.70 19.08 8.29 179.05 1.48 20.57 16 15 O -0.63 -21.92 15.42 -3.99 -0.06 -21.98 16 16 N -0.73 -13.87 4.95 -454.35 -2.25 -16.12 16 17 C 0.16 2.65 3.27 45.72 0.15 2.80 16 18 H 0.08 1.68 7.52 -2.39 -0.02 1.66 16 19 C -0.12 -1.08 6.57 31.32 0.21 -0.88 16 20 C -0.14 -1.38 6.63 31.67 0.21 -1.17 16 21 C 0.08 1.19 4.70 31.93 0.15 1.34 16 22 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 23 F -0.23 -4.87 17.22 44.97 0.77 -4.10 16 24 C -0.16 -2.94 6.35 31.71 0.20 -2.74 16 25 C 0.13 3.60 6.41 86.36 0.55 4.15 16 26 C -0.12 -3.63 5.36 30.67 0.16 -3.47 16 27 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 28 H 0.01 0.48 7.20 -2.38 -0.02 0.46 16 29 H 0.01 0.57 7.57 -2.39 -0.02 0.56 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.42 6.91 -2.38 -0.02 2.40 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.10 1.63 5.56 -2.39 -0.01 1.62 16 35 H 0.41 5.74 5.76 -92.71 -0.53 5.20 16 36 H 0.09 0.62 7.61 -2.38 -0.02 0.61 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.37 8.04 -2.38 -0.02 1.35 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.08 2.30 7.04 -2.39 -0.02 2.28 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -70.37 350.38 3.16 -67.22 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.39 Total: 14.79 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 4.61 Total: -9.12 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -4.44 Total: -92.59 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -0.06 Total: -21.98 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.77 Total: -4.10 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.77 kcal Total: -70.37 3.16 -67.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335428362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.683 kcal (2) G-P(sol) polarization free energy of solvation -70.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds