Wall clock time and date at job start Fri Apr 10 2020 20:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 110.64224 * 2 1 4 4 C 1.34779 * 119.99684 * 303.14267 * 3 2 1 5 5 O 1.21287 * 120.00160 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99688 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47295 * 299.99742 * 6 4 3 8 8 C 1.53003 * 109.47238 * 179.97438 * 7 6 4 9 9 C 1.53006 * 109.46628 * 60.00224 * 8 7 6 10 10 F 1.39903 * 109.47158 * 60.00247 * 9 8 7 11 11 C 1.52997 * 109.47128 * 299.99843 * 9 8 7 12 12 C 1.52996 * 109.47380 * 60.00083 * 11 9 8 13 13 C 1.55151 * 110.71741 * 123.13968 * 2 1 3 14 14 C 1.54914 * 101.58023 * 153.86287 * 13 2 1 15 15 N 1.47420 * 104.83159 * 322.99181 * 14 13 2 16 16 C 1.36945 * 125.64792 * 204.08975 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47020 * 108.70626 * 24.35323 * 15 14 13 25 25 H 1.08995 * 109.47166 * 296.86362 * 1 2 3 26 26 H 1.09000 * 109.47069 * 56.85827 * 1 2 3 27 27 H 1.08991 * 109.47197 * 176.86005 * 1 2 3 28 28 H 0.96989 * 119.99863 * 123.14184 * 3 2 1 29 29 H 1.09005 * 109.47007 * 60.00224 * 6 4 3 30 30 H 1.08995 * 109.47076 * 300.00511 * 7 6 4 31 31 H 1.09002 * 109.47126 * 60.00425 * 7 6 4 32 32 H 1.08992 * 109.47131 * 300.00763 * 8 7 6 33 33 H 1.09000 * 109.47086 * 179.97438 * 8 7 6 34 34 H 1.08995 * 109.46947 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.46980 * 300.00029 * 11 9 8 36 36 H 1.09006 * 109.47069 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47674 * 179.97438 * 12 11 9 38 38 H 1.09003 * 109.47108 * 60.00024 * 12 11 9 39 39 H 1.09002 * 111.00697 * 35.79181 * 13 2 1 40 40 H 1.08994 * 111.00548 * 271.93648 * 13 2 1 41 41 H 1.08999 * 110.37083 * 204.15142 * 14 13 2 42 42 H 1.08999 * 110.36305 * 81.82793 * 14 13 2 43 43 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.88406 * 118.12749 * 24 15 14 45 45 H 1.09001 * 109.88743 * 239.29401 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.6869 2.2265 -0.9774 5 8 0.9361 1.8613 -1.8571 6 6 2.2186 3.6366 -0.9777 7 6 1.7891 4.3439 0.3092 8 6 2.3295 5.7753 0.3091 9 6 1.7716 6.5309 -0.8987 10 9 0.3748 6.5598 -0.8262 11 6 2.2011 5.8236 -2.1856 12 6 1.6608 4.3922 -2.1855 13 6 2.0789 -0.7933 1.2151 14 6 3.4633 -1.2487 0.6896 15 7 3.2445 -1.5520 -0.7363 16 6 4.0043 -2.3996 -1.4977 17 1 3.7611 -2.5551 -2.5384 18 6 5.0869 -3.0587 -0.9318 19 7 5.3829 -2.8695 0.3366 20 14 6.1229 -4.2154 -1.9702 21 1 7.2104 -4.7886 -1.1372 22 1 5.2682 -5.3118 -2.4921 23 1 6.7141 -3.4648 -3.1070 24 6 2.0793 -0.7891 -1.2073 25 1 -0.3633 0.4643 0.9167 26 1 -0.3633 0.5618 -0.8605 27 1 -0.3633 -1.0260 -0.0563 28 1 2.6472 1.6629 0.7033 29 1 3.3069 3.6145 -1.0344 30 1 0.7009 4.3659 0.3658 31 1 2.1869 3.8059 1.1697 32 1 3.4177 5.7528 0.2526 33 1 2.0231 6.2794 1.2258 34 1 2.1562 7.5508 -0.8986 35 1 3.2894 5.8012 -2.2420 36 1 1.8040 6.3622 -3.0461 37 1 1.9664 3.8884 -3.1025 38 1 0.5725 4.4146 -2.1291 39 1 1.4451 -1.6511 1.4403 40 1 2.1850 -0.1482 2.0872 41 1 3.7960 -2.1406 1.2205 42 1 4.1931 -0.4465 0.7992 43 1 6.1393 -3.3304 0.7321 44 1 2.3814 -0.1004 -1.9963 45 1 1.3155 -1.4714 -1.5804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046599708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:39:43 Heat of formation + Delta-G solvation = -80.456556 kcal Electronic energy + Delta-G solvation = -25582.424688 eV Core-core repulsion = 21934.959218 eV Total energy + Delta-G solvation = -3647.465470 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 298.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.80986 -40.17341 -38.01972 -36.62774 -33.98773 -32.13421 -31.03084 -30.79508 -29.60722 -28.63164 -25.66238 -24.16273 -23.40064 -22.94059 -20.79818 -20.28104 -19.64756 -18.93947 -17.32277 -16.76354 -16.38270 -15.88837 -15.53929 -15.50875 -14.69159 -14.60056 -14.19148 -13.75885 -13.69681 -13.38122 -13.15963 -12.75742 -12.73082 -12.46835 -12.21551 -12.16401 -11.99782 -11.83305 -11.67167 -11.53846 -11.30864 -10.93407 -10.85146 -10.83147 -10.60213 -10.35399 -10.31827 -10.26696 -10.10731 -9.88568 -9.63276 -9.10270 -8.64476 -8.56172 -6.80209 -5.64274 -3.04655 2.96277 3.41734 3.45609 3.46719 3.47934 4.25192 4.31477 4.45376 4.51011 4.54330 4.80762 4.88834 5.02369 5.06807 5.18733 5.20203 5.30311 5.42147 5.51044 5.51788 5.60323 5.63391 5.67485 5.74479 5.76795 5.89505 5.98382 6.09119 6.11006 6.20728 6.25430 6.28405 6.40135 6.49007 6.55895 6.74955 6.84987 7.18588 7.45696 7.64209 7.82081 7.92818 8.36462 8.60314 9.24254 9.85025 10.50097 11.39963 Molecular weight = 298.18amu Principal moments of inertia in cm(-1) A = 0.023003 B = 0.003652 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.921637 B = 7665.735506 C = 8009.074177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 N -0.707 5.707 4 C 0.519 3.481 5 O -0.538 6.538 6 C -0.109 4.109 7 C -0.111 4.111 8 C -0.144 4.144 9 C 0.090 3.910 10 F -0.213 7.213 11 C -0.146 4.146 12 C -0.099 4.099 13 C -0.147 4.147 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.218 4.218 17 H 0.076 0.924 18 C -0.012 4.012 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.286 1.286 24 C 0.138 3.862 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.396 0.604 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.009 0.991 43 H 0.252 0.748 44 H 0.030 0.970 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 18.034 2.549 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.073 3.927 3 N -0.358 5.358 4 C 0.305 3.695 5 O -0.415 6.415 6 C -0.130 4.130 7 C -0.149 4.149 8 C -0.182 4.182 9 C 0.054 3.946 10 F -0.194 7.194 11 C -0.184 4.184 12 C -0.137 4.137 13 C -0.186 4.186 14 C 0.028 3.972 15 N -0.330 5.330 16 C -0.347 4.347 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.574 5.574 20 Si 0.745 3.255 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.213 1.213 24 C 0.011 3.989 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.027 0.973 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.559 17.604 1.932 18.885 hybrid contribution 0.955 -0.401 -0.171 1.050 sum -5.604 17.203 1.761 18.178 Atomic orbital electron populations 1.22065 0.94265 1.02336 1.02345 1.21338 0.93036 0.80567 0.97733 1.46009 1.49560 1.12017 1.28212 1.20396 0.80901 0.86750 0.81424 1.90644 1.36112 1.78304 1.36435 1.21376 1.02012 0.92432 0.97193 1.21483 1.02202 0.94811 0.96376 1.22132 1.01797 0.96233 0.98000 1.21583 0.76115 1.00231 0.96682 1.92804 1.31237 1.97871 1.97446 1.22167 1.02208 0.96960 0.97056 1.21283 1.01763 0.93207 0.97453 1.23351 1.01232 0.98858 0.95128 1.21928 0.89372 1.00545 0.85327 1.44505 1.30997 1.50068 1.07442 1.19058 1.06111 1.16518 0.93004 0.90626 1.24750 0.98766 1.00738 0.96459 1.69770 1.30208 1.46544 1.10912 0.86150 0.79744 0.80660 0.78958 1.21588 1.21158 1.21300 1.21595 0.90271 0.93062 0.93924 0.93298 0.90507 0.91935 0.76972 0.88551 0.90759 0.90880 0.89819 0.90530 0.90121 0.90046 0.90568 0.90600 0.90601 0.90615 0.91970 0.87467 0.97264 0.93780 0.95238 0.95291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.43 37.16 0.31 -2.16 16 2 C 0.16 2.88 0.81 -129.98 -0.10 2.77 16 3 N -0.71 -11.09 5.04 -45.90 -0.23 -11.32 16 4 C 0.52 8.17 6.37 -10.99 -0.07 8.10 16 5 O -0.54 -10.28 12.96 5.55 0.07 -10.20 16 6 C -0.11 -1.27 2.52 -91.77 -0.23 -1.50 16 7 C -0.11 -1.06 4.98 -26.73 -0.13 -1.19 16 8 C -0.14 -1.08 5.72 -26.73 -0.15 -1.24 16 9 C 0.09 0.74 4.12 -26.73 -0.11 0.63 16 10 F -0.21 -2.39 16.05 2.25 0.04 -2.36 16 11 C -0.15 -1.24 5.72 -26.73 -0.15 -1.40 16 12 C -0.10 -1.14 4.37 -26.73 -0.12 -1.26 16 13 C -0.15 -2.68 6.07 -24.58 -0.15 -2.83 16 14 C 0.15 3.63 5.87 -2.53 -0.01 3.61 16 15 N -0.60 -15.75 3.39 -170.07 -0.58 -16.32 16 16 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 19 N -0.93 -26.78 10.09 55.49 0.56 -26.22 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.14 3.13 6.20 -3.06 -0.02 3.11 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 27 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 28 H 0.40 5.36 7.90 -40.82 -0.32 5.03 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.81 7.80 -51.93 -0.41 0.41 16 31 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 38 H 0.08 1.00 7.76 -51.93 -0.40 0.60 16 39 H 0.08 1.37 8.05 -51.93 -0.42 0.95 16 40 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 41 H 0.11 2.87 5.87 -51.93 -0.30 2.57 16 42 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.03 0.72 6.91 -51.93 -0.36 0.36 16 45 H 0.03 0.67 7.77 -51.93 -0.40 0.27 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -32.24 346.45 -8.64 -40.88 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.50 Total: 3.22 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.19 Total: -0.17 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.25 Total: -53.87 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.24 -8.64 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046599708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.578 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds