Wall clock time and date at job start Fri Apr 10 2020 20:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46583 * 2 1 4 4 N 1.46502 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99832 * 269.99917 * 4 3 2 6 6 H 1.08003 * 119.99765 * 321.72681 * 5 4 3 7 7 C 1.38811 * 119.99814 * 141.73169 * 5 4 3 8 8 N 1.31620 * 119.99861 * 341.30355 * 7 5 4 9 9 Si 1.86801 * 119.99787 * 161.30981 * 7 5 4 10 10 H 1.48496 * 109.47223 * 90.00135 * 9 7 5 11 11 H 1.48506 * 109.46963 * 209.99771 * 9 7 5 12 12 H 1.48501 * 109.47368 * 329.99344 * 9 7 5 13 13 C 1.46500 * 120.00262 * 90.00103 * 4 3 2 14 14 N 1.46502 * 109.46857 * 79.92366 * 13 4 3 15 15 C 1.47092 * 125.55885 * 90.00554 * 14 13 4 16 16 C 1.54091 * 103.77652 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.52059 * 241.36615 * 16 15 14 18 18 C 1.53004 * 110.51927 * 118.63233 * 16 15 14 19 19 C 1.53002 * 109.46859 * 175.00039 * 18 16 15 20 20 C 1.53001 * 109.47077 * 59.99788 * 19 18 16 21 21 C 1.52994 * 109.46726 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.47185 * 299.99788 * 19 18 16 23 23 O 1.45693 * 104.00880 * 359.97438 * 16 15 14 24 24 C 1.33777 * 109.47721 * 359.75181 * 23 16 15 25 25 O 1.21511 * 123.07022 * 180.23817 * 24 23 16 26 26 H 1.08995 * 109.47373 * 60.00552 * 1 2 3 27 27 H 1.08998 * 109.46654 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47433 * 299.99821 * 1 2 3 29 29 H 1.08995 * 109.47373 * 119.99448 * 2 1 3 30 30 H 1.08998 * 109.47176 * 240.00552 * 2 1 3 31 31 H 1.09007 * 109.47136 * 299.99982 * 3 2 1 32 32 H 1.08999 * 109.47432 * 59.99834 * 3 2 1 33 33 H 0.96999 * 119.99365 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.47437 * 199.92798 * 13 4 3 35 35 H 1.08999 * 109.46669 * 319.92901 * 13 4 3 36 36 H 1.08999 * 110.56699 * 298.54968 * 15 14 13 37 37 H 1.09002 * 110.56516 * 61.40205 * 15 14 13 38 38 H 1.08996 * 109.46586 * 294.99485 * 18 16 15 39 39 H 1.08997 * 109.46958 * 54.99826 * 18 16 15 40 40 H 1.09000 * 109.47095 * 60.00136 * 20 19 18 41 41 H 1.09002 * 109.46486 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.47238 * 299.99793 * 20 19 18 43 43 H 1.09000 * 109.47473 * 60.00044 * 21 19 18 44 44 H 1.09009 * 109.46729 * 180.02562 * 21 19 18 45 45 H 1.08996 * 109.47188 * 299.99277 * 21 19 18 46 46 H 1.08999 * 109.47201 * 60.00164 * 22 19 18 47 47 H 1.08995 * 109.47702 * 180.02562 * 22 19 18 48 48 H 1.08997 * 109.47172 * 300.00543 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.4425 1.1850 6 1 3.8244 2.0218 2.0201 7 6 5.3546 0.6980 1.3136 8 7 5.6098 -0.2761 0.4660 9 14 6.5592 1.0785 2.6897 10 1 6.2092 0.2768 3.8897 11 1 7.9361 0.7370 2.2506 12 1 6.4901 2.5241 3.0225 13 6 4.2369 1.4429 -1.2696 14 7 4.2715 2.8029 -1.8131 15 6 5.3123 3.8063 -1.5418 16 6 4.8587 5.0344 -2.3544 17 1 5.6055 5.2928 -3.1053 18 6 4.5945 6.2229 -1.4277 19 6 4.2674 7.4603 -2.2660 20 6 3.0231 7.1879 -3.1136 21 6 4.0025 8.6485 -1.3394 22 6 5.4490 7.7818 -3.1833 23 8 3.6234 4.5987 -2.9921 24 6 3.3638 3.3334 -2.6439 25 8 2.3915 2.7226 -3.0412 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8899 33 1 6.4234 -0.7965 0.5561 34 1 5.2553 1.0927 -1.1017 35 1 3.7372 0.7814 -1.9773 36 1 5.3483 4.0428 -0.4784 37 1 6.2835 3.4543 -1.8898 38 1 3.7527 5.9938 -0.7743 39 1 5.4809 6.4169 -0.8239 40 1 2.1813 6.9589 -2.4601 41 1 2.7905 8.0693 -3.7112 42 1 3.2114 6.3412 -3.7738 43 1 4.8887 8.8428 -0.7352 44 1 3.7691 9.5301 -1.9366 45 1 3.1605 8.4193 -0.6863 46 1 5.6373 6.9351 -3.8435 47 1 5.2163 8.6636 -3.7802 48 1 6.3354 7.9758 -2.5795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190217841.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:04 Heat of formation + Delta-G solvation = -74.252532 kcal Electronic energy + Delta-G solvation = -26366.886489 eV Core-core repulsion = 22843.150350 eV Total energy + Delta-G solvation = -3523.736139 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.02096 -37.91107 -36.38793 -35.98228 -34.05533 -32.75318 -30.89847 -30.20169 -27.41284 -27.21955 -26.46754 -25.61789 -25.04307 -22.37235 -22.06787 -20.56733 -19.72750 -18.80257 -17.39143 -16.41843 -16.25795 -15.86660 -15.07063 -14.74289 -14.62977 -14.17106 -14.16331 -14.00303 -13.79177 -13.33898 -13.06571 -12.96807 -12.70038 -12.56423 -12.45752 -12.03248 -11.82435 -11.62052 -11.59642 -11.49636 -11.31416 -11.06028 -10.89069 -10.83152 -10.69729 -10.66736 -10.57990 -10.43699 -10.19081 -10.07993 -9.97121 -9.72793 -9.54632 -8.66341 -8.15119 -6.84144 -6.05038 -3.57239 3.18193 3.29539 3.32896 3.33580 3.51622 4.07182 4.33921 4.45165 4.67796 4.78996 4.90296 5.06432 5.17373 5.19455 5.44298 5.49109 5.53169 5.59988 5.65775 5.73189 5.73750 5.86155 5.87156 5.92001 5.93505 5.96099 6.02427 6.12586 6.16932 6.21190 6.23616 6.37195 6.43242 6.54126 6.62802 6.73930 6.75315 6.79394 7.06158 7.14599 7.32330 7.49662 7.66507 8.16145 8.37694 8.87006 8.99147 9.59271 10.21283 11.02300 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.005324 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.843276 B = 5257.914620 C = 6466.851298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.138 3.862 4 N -0.570 5.570 5 C -0.266 4.266 6 H 0.062 0.938 7 C 0.018 3.982 8 N -0.890 5.890 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.378 3.622 14 N -0.621 5.621 15 C 0.070 3.930 16 C 0.069 3.931 17 H 0.106 0.894 18 C -0.115 4.115 19 C -0.068 4.068 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.145 4.145 23 O -0.334 6.334 24 C 0.627 3.373 25 O -0.543 6.543 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 13.000 -4.436 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.173 4.173 3 C 0.013 3.987 4 N -0.290 5.290 5 C -0.396 4.396 6 H 0.079 0.921 7 C -0.183 4.183 8 N -0.532 5.532 9 Si 0.729 3.271 10 H -0.210 1.210 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.172 3.828 14 N -0.373 5.373 15 C -0.055 4.055 16 C 0.012 3.988 17 H 0.124 0.876 18 C -0.153 4.153 19 C -0.068 4.068 20 C -0.200 4.200 21 C -0.198 4.198 22 C -0.202 4.202 23 O -0.246 6.246 24 C 0.381 3.619 25 O -0.430 6.430 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.704 12.637 -4.740 13.515 hybrid contribution 0.826 0.061 0.934 1.249 sum 1.531 12.698 -3.806 13.345 Atomic orbital electron populations 1.21737 0.97675 1.00257 1.00789 1.21952 0.93242 1.00292 1.01847 1.21111 0.84743 0.93911 0.98961 1.44427 1.00258 1.81763 1.02553 1.19094 1.06130 1.23036 0.91382 0.92078 1.25269 1.00689 0.94510 0.97817 1.69946 1.26082 1.18516 1.38652 0.86359 0.80467 0.78437 0.81871 1.20988 1.21315 1.20194 1.21186 1.00567 0.76271 0.84732 1.50681 1.23157 1.16747 1.46742 1.22759 0.93500 0.87675 1.01538 1.23869 0.84785 0.94900 0.95197 0.87623 1.22014 1.03222 0.92784 0.97246 1.20528 0.96214 0.94525 0.95562 1.22000 0.96579 1.01463 0.99930 1.21862 1.01518 0.97289 0.99094 1.21957 0.97449 1.01473 0.99319 1.87297 1.41948 1.28130 1.67192 1.19032 0.83612 0.80187 0.79117 1.90949 1.29733 1.61246 1.61085 0.93411 0.93875 0.93577 0.92084 0.92996 0.93331 0.94327 0.93073 0.86524 0.92300 0.89215 0.90258 0.90531 0.89791 0.92876 0.93582 0.90477 0.92778 0.92789 0.92630 0.92329 0.92741 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 37.16 0.37 -2.17 16 2 C -0.13 -2.82 6.26 -26.73 -0.17 -2.99 16 3 C 0.14 3.12 5.71 -4.04 -0.02 3.10 16 4 N -0.57 -13.80 2.66 -176.94 -0.47 -14.27 16 5 C -0.27 -6.82 9.47 -15.06 -0.14 -6.96 16 6 H 0.06 1.59 7.90 -52.48 -0.41 1.17 16 7 C 0.02 0.46 4.92 -17.43 -0.09 0.37 16 8 N -0.89 -23.65 11.51 55.49 0.64 -23.02 16 9 Si 0.90 19.93 29.59 -169.99 -5.03 14.90 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 13 C 0.38 8.73 6.02 -63.75 -0.38 8.35 16 14 N -0.62 -12.47 3.20 -182.58 -0.58 -13.06 16 15 C 0.07 1.11 7.34 -3.15 -0.02 1.09 16 16 C 0.07 0.92 3.43 -26.16 -0.09 0.83 16 17 H 0.11 1.16 6.14 -51.93 -0.32 0.84 16 18 C -0.12 -1.34 3.94 -26.73 -0.11 -1.45 16 19 C -0.07 -0.71 0.80 -154.51 -0.12 -0.83 16 20 C -0.14 -1.71 7.68 37.16 0.29 -1.42 16 21 C -0.14 -1.30 8.47 37.15 0.31 -0.99 16 22 C -0.14 -1.29 8.15 37.16 0.30 -0.99 16 23 O -0.33 -5.79 7.66 -37.85 -0.29 -6.08 16 24 C 0.63 13.07 8.65 53.71 0.46 13.54 16 25 O -0.54 -13.15 16.25 -19.12 -0.31 -13.47 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 1.13 6.52 -51.93 -0.34 0.80 16 32 H 0.04 0.86 8.04 -51.93 -0.42 0.44 16 33 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 34 H 0.12 2.87 5.66 -51.93 -0.29 2.57 16 35 H 0.06 1.44 7.91 -51.93 -0.41 1.03 16 36 H 0.09 1.47 7.73 -51.93 -0.40 1.07 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 1.06 5.47 -51.93 -0.28 0.77 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.53 6.28 -51.93 -0.33 0.21 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -28.78 375.03 -8.49 -37.27 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.68 Total: 2.60 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 0.59 Total: 9.47 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.42 Total: -50.35 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.60 Total: -19.54 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.78 -8.49 -37.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190217841.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.984 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds