Wall clock time and date at job start Fri Apr 10 2020 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52994 * 109.47286 * 239.99698 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.47594 * 118.64754 * 359.46143 * 8 6 5 10 10 C 1.54303 * 111.94816 * 137.77260 * 9 8 6 11 11 C 1.50877 * 110.23084 * 319.70565 * 10 9 8 12 12 C 1.52570 * 109.36019 * 91.79639 * 11 10 9 13 13 C 1.47097 * 114.32561 * 274.98327 * 12 11 10 14 14 H 1.09001 * 109.32878 * 302.54182 * 13 12 11 15 15 N 1.46899 * 109.32731 * 183.06276 * 13 12 11 16 16 C 1.46906 * 110.99596 * 154.13374 * 15 13 12 17 17 C 1.50701 * 109.46863 * 180.02562 * 16 15 13 18 18 H 1.08005 * 120.00107 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99817 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99586 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 120.00173 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47055 * 90.00292 * 21 19 17 23 23 H 1.48498 * 109.46944 * 210.00370 * 21 19 17 24 24 H 1.48498 * 109.46988 * 330.00656 * 21 19 17 25 25 C 1.44583 * 118.63898 * 179.72573 * 8 6 5 26 26 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 27 27 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 28 28 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 31 31 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 32 32 H 1.08995 * 109.47307 * 299.99583 * 4 2 1 33 33 H 1.08999 * 109.47211 * 60.00515 * 4 2 1 34 34 H 1.09010 * 109.46887 * 180.02562 * 4 2 1 35 35 H 1.08997 * 108.95150 * 258.57457 * 9 8 6 36 36 H 1.09003 * 108.94844 * 17.20294 * 9 8 6 37 37 H 1.08995 * 109.37341 * 199.42233 * 10 9 8 38 38 H 1.09001 * 109.21676 * 79.89104 * 10 9 8 39 39 H 1.08994 * 109.49732 * 331.82848 * 11 10 9 40 40 H 1.09003 * 109.50760 * 211.76591 * 11 10 9 41 41 H 1.09004 * 108.51217 * 153.72957 * 12 11 10 42 42 H 1.08998 * 108.39042 * 36.15179 * 12 11 10 43 43 H 1.00892 * 111.00321 * 30.18205 * 15 13 12 44 44 H 1.09000 * 109.46618 * 299.99527 * 16 15 13 45 45 H 1.08994 * 109.47108 * 59.99641 * 16 15 13 46 46 H 0.97010 * 119.99349 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.45067 * 30.74714 * 25 8 6 48 48 H 1.09001 * 109.44350 * 150.66966 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 2.9184 -1.9835 3.4118 10 6 2.5019 -2.3189 4.8592 11 6 0.9980 -2.3478 4.9760 12 6 0.4991 -3.7693 4.7346 13 6 0.3043 -4.1106 3.3171 14 1 -0.3975 -3.4067 2.8697 15 7 -0.2439 -5.4696 3.2151 16 6 -1.0071 -5.6374 1.9711 17 6 -1.5532 -7.0403 1.9021 18 1 -1.3529 -7.7376 2.7022 19 6 -2.3075 -7.4338 0.8172 20 7 -2.7836 -8.6583 0.7569 21 14 -2.6532 -6.2279 -0.5669 22 1 -1.5817 -6.3284 -1.5901 23 1 -3.9629 -6.5499 -1.1883 24 1 -2.6898 -4.8468 -0.0224 25 6 1.6522 -4.0432 2.5575 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6768 -1.7489 -1.2491 33 1 1.6768 -0.2075 -2.1392 34 1 3.1301 -0.7216 -1.2488 35 1 3.9527 -2.2908 3.2573 36 1 2.8450 -0.9062 3.2629 37 1 2.9025 -1.5634 5.5350 38 1 2.9045 -3.2946 5.1314 39 1 0.5626 -1.6787 4.2338 40 1 0.7041 -2.0240 5.9744 41 1 -0.4504 -3.8959 5.2547 42 1 1.2217 -4.4645 5.1618 43 1 -0.8104 -5.6924 4.0196 44 1 -1.8322 -4.9254 1.9523 45 1 -0.3537 -5.4590 1.1171 46 1 -3.3147 -8.9350 -0.0063 47 1 1.5344 -4.4871 1.5690 48 1 2.4105 -4.5937 3.1142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496798607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:27 Heat of formation + Delta-G solvation = -82.138543 kcal Electronic energy + Delta-G solvation = -26408.865894 eV Core-core repulsion = 22884.787792 eV Total energy + Delta-G solvation = -3524.078102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92115 -38.95535 -36.69317 -35.48052 -34.09100 -33.36408 -32.51133 -30.51371 -27.53620 -27.43143 -27.13703 -26.56227 -24.63338 -22.53356 -21.24349 -20.51109 -20.27176 -19.00550 -17.82040 -16.88395 -16.64951 -16.11989 -15.75218 -15.14163 -14.87923 -14.59275 -14.23979 -14.09986 -13.79951 -13.52551 -13.37652 -13.07136 -12.89491 -12.64211 -12.52495 -12.34187 -12.07141 -12.02374 -11.97366 -11.75737 -11.54566 -11.42379 -11.35392 -11.12411 -10.89407 -10.78747 -10.45940 -10.36805 -10.34533 -10.12007 -9.87278 -9.72328 -9.22137 -8.63933 -8.51097 -7.45175 -5.99781 -3.97258 2.23748 2.96934 3.38392 3.44391 3.52879 3.79166 4.50656 4.53394 4.62358 4.65817 4.80422 4.81758 4.90858 5.06594 5.12477 5.27654 5.33353 5.34665 5.41551 5.42422 5.48902 5.57043 5.57588 5.63433 5.73095 5.78102 5.78800 5.84010 5.88904 6.01365 6.03282 6.16715 6.23154 6.25761 6.29210 6.37521 6.46790 6.55950 6.70890 6.95025 7.12887 7.43816 7.69547 7.93462 8.37342 8.48852 8.70243 9.07646 9.63385 11.13264 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.012948 B = 0.005425 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.015260 B = 5159.965546 C = 6850.859491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.642 3.358 7 O -0.556 6.556 8 N -0.585 5.585 9 C 0.113 3.887 10 C -0.131 4.131 11 C -0.112 4.112 12 C -0.122 4.122 13 C 0.073 3.927 14 H 0.037 0.963 15 N -0.674 5.674 16 C 0.167 3.833 17 C -0.515 4.515 18 H 0.079 0.921 19 C 0.070 3.930 20 N -0.902 5.902 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.266 1.266 25 C 0.142 3.858 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.338 0.662 44 H -0.017 1.017 45 H 0.027 0.973 46 H 0.263 0.737 47 H 0.092 0.908 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.776 21.353 4.553 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.195 4.195 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.396 3.604 7 O -0.444 6.444 8 N -0.326 5.326 9 C -0.009 4.009 10 C -0.169 4.169 11 C -0.150 4.150 12 C -0.159 4.159 13 C -0.039 4.039 14 H 0.055 0.945 15 N -0.305 5.305 16 C 0.039 3.961 17 C -0.553 4.553 18 H 0.097 0.903 19 C -0.132 4.132 20 N -0.541 5.541 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.191 1.191 25 C 0.019 3.981 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.156 0.844 44 H 0.001 0.999 45 H 0.045 0.955 46 H 0.073 0.927 47 H 0.110 0.890 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.021 20.832 3.874 24.870 hybrid contribution -1.125 1.036 -0.681 1.674 sum 11.896 21.868 3.193 25.098 Atomic orbital electron populations 1.22520 0.94062 1.05389 1.02198 1.22010 0.94344 0.91351 0.82406 1.21838 1.02020 0.92757 1.02928 1.22516 1.01316 1.03855 0.96408 1.86261 1.71794 1.23998 1.46130 1.18187 0.79112 0.80475 0.82640 1.90968 1.40293 1.69907 1.43192 1.46673 1.52740 1.12529 1.20612 1.22002 0.93259 0.97618 0.88028 1.21840 0.96944 1.02748 0.95366 1.20990 0.95210 0.97402 1.01418 1.20681 1.01930 0.96398 0.96929 1.20965 0.96097 0.92107 0.94709 0.94526 1.60399 1.42242 1.21404 1.06502 1.20034 0.91080 0.96867 0.88124 1.21074 1.31244 0.95898 1.07125 0.90320 1.24870 0.95330 0.95012 0.97940 1.69911 1.36076 1.17297 1.30830 0.86848 0.77692 0.82309 0.82904 1.20080 1.21391 1.19068 1.21480 0.95888 0.77895 1.02829 0.92333 0.91309 0.89153 0.91623 0.90323 0.91633 0.89156 0.91322 0.92328 0.91821 0.89680 0.90743 0.91054 0.92008 0.91820 0.92417 0.91232 0.84406 0.99949 0.95522 0.92741 0.89012 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 8.37 37.16 0.31 -2.00 16 2 C 0.14 1.60 1.13 -90.62 -0.10 1.50 16 3 C -0.14 -1.15 8.85 37.16 0.33 -0.82 16 4 C -0.18 -2.21 8.37 37.15 0.31 -1.90 16 5 O -0.37 -4.96 8.39 -40.32 -0.34 -5.30 16 6 C 0.64 10.28 7.64 54.06 0.41 10.70 16 7 O -0.56 -10.83 11.31 -19.28 -0.22 -11.05 16 8 N -0.59 -8.30 2.23 -178.11 -0.40 -8.70 16 9 C 0.11 1.16 6.15 -2.76 -0.02 1.15 16 10 C -0.13 -1.18 5.71 -27.11 -0.15 -1.33 16 11 C -0.11 -1.22 5.51 -28.02 -0.15 -1.37 16 12 C -0.12 -1.63 4.44 -29.78 -0.13 -1.76 16 13 C 0.07 1.26 2.39 -69.56 -0.17 1.10 16 14 H 0.04 0.73 7.77 -51.93 -0.40 0.33 16 15 N -0.67 -14.12 6.29 -109.97 -0.69 -14.81 16 16 C 0.17 4.27 4.29 -4.97 -0.02 4.24 16 17 C -0.52 -15.20 9.87 -34.44 -0.34 -15.54 16 18 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 20 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 21 Si 0.88 23.03 27.47 -169.99 -4.67 18.37 16 22 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 H -0.27 -6.95 6.54 56.52 0.37 -6.58 16 25 C 0.14 2.31 4.94 -4.08 -0.02 2.29 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 1.46 5.88 -51.93 -0.31 1.16 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.83 6.87 -51.93 -0.36 0.48 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.64 7.31 -51.93 -0.38 0.26 16 39 H 0.06 0.77 7.49 -51.93 -0.39 0.39 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 42 H 0.07 0.89 7.35 -51.93 -0.38 0.51 16 43 H 0.34 6.79 8.17 -39.30 -0.32 6.47 16 44 H -0.02 -0.46 7.11 -51.93 -0.37 -0.82 16 45 H 0.03 0.72 6.76 -51.93 -0.35 0.37 16 46 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 47 H 0.09 1.81 6.45 -51.93 -0.34 1.47 16 48 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -33.31 364.37 -8.44 -41.74 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.55 Total: 3.69 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 0.16 Total: -1.74 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.32 Total: -51.20 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.56 Total: -16.35 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.67 Total: 18.37 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.31 -8.44 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496798607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.395 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds