Wall clock time and date at job start Fri Apr 10 2020 20:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47016 * 2 1 4 4 H 1.09005 * 109.47250 * 55.00432 * 3 2 1 5 5 C 1.53004 * 109.47454 * 295.00362 * 3 2 1 6 6 C 1.52998 * 109.47252 * 175.00056 * 3 2 1 7 7 C 1.53004 * 109.47594 * 185.00288 * 6 3 2 8 8 H 1.09003 * 109.46497 * 305.00273 * 7 6 3 9 9 C 1.52999 * 109.47502 * 185.00363 * 7 6 3 10 10 N 1.46505 * 109.46996 * 64.99738 * 7 6 3 11 11 C 1.34773 * 119.99854 * 205.00219 * 10 7 6 12 12 O 1.21588 * 120.00026 * 0.02562 * 11 10 7 13 13 N 1.34774 * 119.99807 * 180.02562 * 11 10 7 14 14 C 1.47027 * 125.65024 * 359.68987 * 13 11 10 15 15 C 1.54332 * 107.26918 * 178.85041 * 14 13 11 16 16 C 1.55161 * 103.01731 * 338.14500 * 15 14 13 17 17 O 1.42901 * 110.99967 * 277.22919 * 16 15 14 18 18 C 1.50699 * 111.03450 * 153.39789 * 16 15 14 19 19 H 1.08006 * 119.99949 * 272.60298 * 18 16 15 20 20 C 1.37878 * 120.00386 * 92.61056 * 18 16 15 21 21 N 1.31515 * 120.00308 * 173.52191 * 20 18 16 22 22 Si 1.86804 * 119.99822 * 353.51006 * 20 18 16 23 23 H 1.48506 * 109.46645 * 87.32747 * 22 20 18 24 24 H 1.48496 * 109.47269 * 207.32459 * 22 20 18 25 25 H 1.48496 * 109.47212 * 327.33109 * 22 20 18 26 26 C 1.47428 * 125.64855 * 180.02562 * 13 11 10 27 27 H 1.08998 * 109.47142 * 59.99652 * 1 2 3 28 28 H 1.08995 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46997 * 299.99469 * 1 2 3 30 30 H 1.08999 * 109.46997 * 240.00531 * 2 1 3 31 31 H 1.08998 * 109.47142 * 120.00348 * 2 1 3 32 32 H 1.08995 * 109.47076 * 60.00409 * 5 3 2 33 33 H 1.09001 * 109.47012 * 180.02562 * 5 3 2 34 34 H 1.08994 * 109.46798 * 299.99784 * 5 3 2 35 35 H 1.08996 * 109.47200 * 65.00315 * 6 3 2 36 36 H 1.08999 * 109.47438 * 305.00011 * 6 3 2 37 37 H 1.08997 * 109.46975 * 180.02562 * 9 7 6 38 38 H 1.09009 * 109.46647 * 299.99954 * 9 7 6 39 39 H 1.08991 * 109.46886 * 59.99513 * 9 7 6 40 40 H 0.96999 * 119.99711 * 25.00519 * 10 7 6 41 41 H 1.09001 * 109.88467 * 298.39892 * 14 13 11 42 42 H 1.09003 * 109.87875 * 59.55941 * 14 13 11 43 43 H 1.09000 * 110.85232 * 219.67641 * 15 14 13 44 44 H 1.08998 * 110.51659 * 96.45096 * 15 14 13 45 45 H 0.96706 * 113.99826 * 168.40446 * 17 16 15 46 46 H 0.96994 * 119.99977 * 180.02562 * 21 20 18 47 47 H 1.08998 * 110.36280 * 322.92604 * 26 13 11 48 48 H 1.08994 * 110.36552 * 85.14523 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4444 0.1257 7 6 4.0645 2.8850 0.2512 8 1 3.6970 3.4716 -0.5909 9 6 5.5945 2.8961 0.2514 10 7 3.5717 3.4656 1.5028 11 6 3.4334 4.8013 1.6175 12 8 3.7172 5.5244 0.6822 13 7 2.9805 5.3354 2.7691 14 6 2.5963 4.5806 3.9710 15 6 2.1712 5.6084 5.0409 16 6 2.8693 6.9118 4.5704 17 8 4.2301 6.9495 5.0052 18 6 2.1193 8.1292 5.0462 19 1 1.3111 8.5315 4.4533 20 6 2.4647 8.7295 6.2384 21 7 1.8986 9.8626 6.5924 22 14 3.7367 7.9333 7.3510 23 1 5.0944 8.3833 6.9517 24 1 3.4787 8.3276 8.7592 25 1 3.6482 6.4563 7.2262 26 6 2.7818 6.7727 3.0299 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.5489 2.1254 -1.3968 33 1 1.9989 3.1542 -1.3074 34 1 2.0698 1.5877 -2.1491 35 1 4.0029 0.9837 -0.7596 36 1 3.8571 0.8801 1.0113 37 1 5.9504 3.9224 0.3413 38 1 5.9619 2.3094 1.0935 39 1 5.9610 2.4641 -0.6797 40 1 3.3450 2.8886 2.2488 41 1 1.7635 3.9160 3.7409 42 1 3.4462 4.0018 4.3326 43 1 2.5301 5.3130 6.0269 44 1 1.0881 5.7306 5.0442 45 1 4.7554 7.6489 4.5928 46 1 2.1420 10.2851 7.4309 47 1 3.5673 7.3573 2.5510 48 1 1.8021 7.0909 2.6735 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591969310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:39:38 Heat of formation + Delta-G solvation = -99.655251 kcal Electronic energy + Delta-G solvation = -25692.839444 eV Core-core repulsion = 22168.001761 eV Total energy + Delta-G solvation = -3524.837683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06119 -38.37376 -37.27544 -34.90167 -34.66125 -32.37066 -31.56177 -30.13151 -29.50144 -28.24519 -27.02476 -25.22089 -24.10709 -22.64591 -21.12419 -20.12452 -19.77305 -19.71127 -17.83912 -17.36391 -16.15317 -15.56610 -15.35537 -15.15995 -14.98841 -14.81557 -14.33345 -13.94561 -13.82852 -13.53728 -13.32590 -12.78614 -12.67257 -12.66904 -12.34402 -12.27351 -12.20131 -11.95592 -11.86156 -11.66391 -11.54472 -11.54049 -11.19033 -11.01190 -10.80358 -10.69813 -10.49200 -10.40300 -10.37739 -10.19823 -9.76416 -9.23235 -8.93370 -8.66193 -8.52112 -7.96990 -6.19018 -4.30984 2.96937 3.45911 3.52092 3.56911 3.69076 4.27241 4.39605 4.49954 4.64040 4.65396 4.99589 5.02106 5.05303 5.15112 5.17234 5.26883 5.34701 5.37161 5.39364 5.49533 5.58348 5.59898 5.63156 5.67611 5.75498 5.77096 5.83858 5.84738 5.88053 5.93957 6.00183 6.10658 6.20411 6.22123 6.26521 6.50835 6.55418 6.68362 6.72636 6.75114 7.06165 7.38059 7.50351 8.12871 8.33761 8.62919 8.81993 8.95444 9.42539 10.89868 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.023223 B = 0.003564 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.386258 B = 7853.586905 C = 8225.274237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.093 4.093 4 H 0.073 0.927 5 C -0.151 4.151 6 C -0.122 4.122 7 C 0.158 3.842 8 H 0.090 0.910 9 C -0.164 4.164 10 N -0.742 5.742 11 C 0.720 3.280 12 O -0.599 6.599 13 N -0.629 5.629 14 C 0.102 3.898 15 C -0.120 4.120 16 C 0.219 3.781 17 O -0.559 6.559 18 C -0.552 4.552 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.888 5.888 22 Si 0.952 3.048 23 H -0.293 1.293 24 H -0.327 1.327 25 H -0.270 1.270 26 C 0.109 3.891 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.392 0.608 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.371 0.629 46 H 0.267 0.733 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.581 -19.911 -11.134 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.112 4.112 4 H 0.091 0.909 5 C -0.208 4.208 6 C -0.160 4.160 7 C 0.053 3.947 8 H 0.108 0.892 9 C -0.223 4.223 10 N -0.398 5.398 11 C 0.422 3.578 12 O -0.478 6.478 13 N -0.366 5.366 14 C -0.021 4.021 15 C -0.158 4.158 16 C 0.179 3.821 17 O -0.367 6.367 18 C -0.589 4.589 19 H 0.099 0.901 20 C -0.131 4.131 21 N -0.523 5.523 22 Si 0.788 3.212 23 H -0.221 1.221 24 H -0.258 1.258 25 H -0.196 1.196 26 C -0.014 4.014 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.226 0.774 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.219 0.781 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.579 -19.761 -11.446 22.890 hybrid contribution 0.655 -0.138 0.699 0.968 sum 2.234 -19.899 -10.746 22.725 Atomic orbital electron populations 1.21824 0.95940 1.01340 1.02095 1.21573 0.95952 0.96350 1.01720 1.21171 0.94979 0.95972 0.99046 0.90896 1.21929 1.01299 1.00906 0.96679 1.21964 0.95698 0.95691 1.02633 1.20825 0.93398 0.93416 0.87067 0.89223 1.22210 0.95842 1.02755 1.01480 1.45205 1.72218 1.05471 1.16928 1.15476 0.78237 0.81970 0.82151 1.90877 1.58386 1.59985 1.38601 1.47714 1.67856 1.09161 1.11875 1.22028 0.98315 0.95429 0.86326 1.22941 1.01130 0.94253 0.97452 1.20249 0.79861 0.94185 0.87812 1.86105 1.24123 1.58133 1.68322 1.21114 1.19557 1.10726 1.07524 0.90068 1.25116 0.96280 0.93986 0.97693 1.69969 1.42773 1.16402 1.23159 0.85634 0.79983 0.79894 0.75730 1.22088 1.25840 1.19608 1.22963 1.01229 0.78494 0.98699 0.92494 0.93033 0.92698 0.92164 0.92160 0.92615 0.92161 0.92885 0.90485 0.91515 0.91884 0.92778 0.92045 0.77393 0.92860 0.92590 0.90246 0.89682 0.78084 0.92410 0.91298 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.12 -0.86 5.40 -26.73 -0.14 -1.01 16 3 C -0.09 -0.80 2.33 -90.62 -0.21 -1.01 16 4 H 0.07 0.73 7.62 -51.93 -0.40 0.33 16 5 C -0.15 -1.38 8.71 37.16 0.32 -1.05 16 6 C -0.12 -1.00 4.22 -26.73 -0.11 -1.11 16 7 C 0.16 1.78 2.44 -67.93 -0.17 1.62 16 8 H 0.09 1.19 5.78 -51.93 -0.30 0.89 16 9 C -0.16 -1.80 9.48 37.16 0.35 -1.44 16 10 N -0.74 -9.80 4.41 -58.67 -0.26 -10.05 16 11 C 0.72 12.83 8.45 -86.92 -0.73 12.09 16 12 O -0.60 -12.79 16.26 5.29 0.09 -12.70 16 13 N -0.63 -11.39 3.33 -176.22 -0.59 -11.97 16 14 C 0.10 1.63 6.15 -3.06 -0.02 1.61 16 15 C -0.12 -2.28 5.90 -24.89 -0.15 -2.43 16 16 C 0.22 4.79 0.70 -89.61 -0.06 4.73 16 17 O -0.56 -12.14 8.52 -35.23 -0.30 -12.44 16 18 C -0.55 -14.48 8.89 -34.44 -0.31 -14.78 16 19 H 0.08 2.32 8.00 -52.48 -0.42 1.90 16 20 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 21 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 22 Si 0.95 23.21 24.93 -169.99 -4.24 18.97 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.33 -8.19 7.11 56.52 0.40 -7.79 16 25 H -0.27 -6.40 5.42 56.52 0.31 -6.10 16 26 C 0.11 2.23 6.07 -2.52 -0.02 2.21 16 27 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 33 H 0.06 0.66 6.46 -51.93 -0.34 0.33 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.39 4.44 7.59 -40.82 -0.31 4.13 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.55 6.65 -51.93 -0.35 1.21 16 44 H 0.08 1.59 8.03 -51.93 -0.42 1.18 16 45 H 0.37 7.30 8.99 45.56 0.41 7.71 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 1.45 8.02 -51.93 -0.42 1.04 16 48 H 0.07 1.44 7.99 -51.93 -0.41 1.02 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -31.60 369.18 -7.87 -39.47 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -7.93 Total: 7.98 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -0.98 Total: 0.59 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.07 Total: -47.44 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.21 Total: -25.14 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.24 Total: 18.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.60 -7.87 -39.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591969310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.182 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds