Wall clock time and date at job start Fri Apr 10 2020 20:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 110.55027 * 2 1 4 4 C 1.55221 * 110.64739 * 237.05509 * 2 1 3 5 5 C 1.54810 * 101.98684 * 204.56192 * 4 2 1 6 6 H 1.08994 * 110.49059 * 261.99303 * 5 4 2 7 7 C 1.53005 * 110.48787 * 139.48329 * 5 4 2 8 8 N 1.46496 * 109.47401 * 68.24164 * 7 5 4 9 9 C 1.34773 * 119.99973 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00151 * 359.73121 * 9 8 7 11 11 N 1.34784 * 119.99935 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72905 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46870 * 299.99298 * 13 12 11 15 15 C 1.53000 * 109.47499 * 59.99732 * 13 12 11 16 16 C 1.50708 * 109.46949 * 179.97438 * 13 12 11 17 17 H 1.07997 * 119.99690 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00050 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99915 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00185 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46940 * 60.00393 * 20 18 16 22 22 H 1.48496 * 109.47341 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47121 * 300.00922 * 20 18 16 24 24 C 1.54102 * 104.30728 * 20.73844 * 5 4 2 25 25 H 1.08997 * 109.87872 * 242.52096 * 24 5 4 26 26 C 1.53005 * 109.87774 * 121.51773 * 24 5 4 27 27 O 1.43748 * 107.29173 * 2.09463 * 24 5 4 28 28 H 1.08995 * 109.47012 * 298.57841 * 1 2 3 29 29 H 1.09001 * 109.46924 * 58.57812 * 1 2 3 30 30 H 1.09003 * 109.46576 * 178.57713 * 1 2 3 31 31 H 1.09000 * 111.02143 * 86.37010 * 4 2 1 32 32 H 1.08998 * 110.89201 * 322.69439 * 4 2 1 33 33 H 1.09007 * 109.46761 * 308.24264 * 7 5 4 34 34 H 1.08997 * 109.46989 * 188.25079 * 7 5 4 35 35 H 0.97004 * 120.00009 * 0.02562 * 8 7 5 36 36 H 0.97005 * 119.99846 * 359.72693 * 11 9 8 37 37 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 38 38 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 39 39 H 1.09007 * 109.46830 * 60.00773 * 14 13 12 40 40 H 1.09005 * 109.46980 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.47292 * 300.00516 * 14 13 12 42 42 H 1.08992 * 109.46855 * 59.99654 * 15 13 12 43 43 H 1.08995 * 109.47095 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.46768 * 299.99888 * 15 13 12 45 45 H 0.97000 * 120.00246 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46771 * 60.00368 * 26 24 5 47 47 H 1.08997 * 109.46492 * 179.97438 * 26 24 5 48 48 H 1.09001 * 109.46932 * 300.00147 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0773 -0.7899 -1.2189 5 6 3.4796 -1.2177 -0.7215 6 1 4.2423 -0.5365 -1.0985 7 6 3.7857 -2.6535 -1.1525 8 7 3.9461 -2.7030 -2.6078 9 6 4.2228 -3.8734 -3.2158 10 8 4.3442 -4.8875 -2.5561 11 7 4.3709 -3.9188 -4.5548 12 6 4.6776 -5.1901 -5.2151 13 6 4.7936 -4.9658 -6.7242 14 6 3.4699 -4.4184 -7.2616 15 6 5.9130 -3.9615 -7.0060 16 6 5.1098 -6.2735 -7.4035 17 1 5.2176 -7.1741 -6.8174 18 6 5.2614 -6.3198 -8.7731 19 7 5.1306 -5.2229 -9.4866 20 14 5.6540 -7.9404 -9.6150 21 1 4.5686 -8.9162 -9.3410 22 1 5.7665 -7.7229 -11.0796 23 1 6.9394 -8.4705 -9.0935 24 6 3.3840 -1.1240 0.8137 25 1 4.0872 -0.3782 1.1840 26 6 3.6936 -2.4861 1.4382 27 8 2.0384 -0.7335 1.1350 28 1 -0.3633 0.4916 0.9024 29 1 -0.3633 0.5358 -0.8770 30 1 -0.3632 -1.0274 -0.0255 31 1 2.1549 -0.1491 -2.0973 32 1 1.4564 -1.6610 -1.4282 33 1 2.9639 -3.3051 -0.8552 34 1 4.7060 -2.9881 -0.6738 35 1 3.8538 -1.8931 -3.1337 36 1 4.2743 -3.1097 -5.0811 37 1 5.6209 -5.5799 -4.8325 38 1 3.8805 -5.9056 -5.0139 39 1 3.2416 -3.4725 -6.7703 40 1 3.5523 -4.2591 -8.3368 41 1 2.6725 -5.1338 -7.0608 42 1 6.8559 -4.3516 -6.6231 43 1 5.9958 -3.8022 -8.0811 44 1 5.6846 -3.0158 -6.5147 45 1 5.2376 -5.2554 -10.4502 46 1 4.7013 -2.7933 1.1587 47 1 3.6245 -2.4121 2.5235 48 1 2.9758 -3.2228 1.0774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413614708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:44 Heat of formation + Delta-G solvation = -92.768806 kcal Electronic energy + Delta-G solvation = -24940.412013 eV Core-core repulsion = 21415.872949 eV Total energy + Delta-G solvation = -3524.539064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41269 -39.34530 -36.55817 -35.18624 -33.32331 -33.04099 -32.21342 -30.68614 -29.05545 -26.52807 -25.71659 -25.41735 -24.49994 -23.79667 -21.63374 -20.59114 -20.13558 -18.76938 -17.99536 -17.18330 -16.07564 -15.85132 -15.77933 -15.41950 -14.94774 -14.71316 -14.39001 -14.10149 -13.69190 -13.33464 -13.10928 -12.94580 -12.84050 -12.58645 -12.46412 -12.28384 -12.16743 -12.13764 -11.54016 -11.35155 -11.18369 -11.10505 -11.05390 -10.84951 -10.83058 -10.71880 -10.37093 -10.20334 -9.93047 -9.75407 -9.61898 -9.29636 -8.95132 -8.78837 -8.40134 -8.16930 -6.01310 -4.11223 3.07576 3.30896 3.34965 3.39191 3.48042 3.66257 4.17441 4.25842 4.39366 4.51094 4.63556 4.79299 4.83566 4.97635 5.08241 5.11224 5.20379 5.25438 5.28757 5.40846 5.47604 5.57118 5.62713 5.75473 5.79270 5.87720 5.88648 6.03793 6.22713 6.38174 6.51615 6.64841 6.69581 6.81311 6.83426 6.91954 7.04255 7.11439 7.31487 7.42794 7.56792 7.70603 8.02159 8.13444 8.39326 8.50123 8.88554 9.06477 9.54467 11.00120 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.002641 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.856139 B =10600.323124 C =11012.514272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.069 0.931 4 C -0.147 4.147 5 C -0.134 4.134 6 H 0.090 0.910 7 C 0.150 3.850 8 N -0.755 5.755 9 C 0.697 3.303 10 O -0.600 6.600 11 N -0.733 5.733 12 C 0.150 3.850 13 C 0.057 3.943 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.085 3.915 25 H 0.071 0.929 26 C -0.160 4.160 27 O -0.371 6.371 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.005 0.995 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.085 0.915 44 H 0.005 0.995 45 H 0.260 0.740 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.369 13.601 16.026 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.087 0.913 4 C -0.184 4.184 5 C -0.153 4.153 6 H 0.108 0.892 7 C 0.025 3.975 8 N -0.412 5.412 9 C 0.397 3.603 10 O -0.479 6.479 11 N -0.388 5.388 12 C 0.027 3.973 13 C 0.056 3.944 14 C -0.187 4.187 15 C -0.188 4.188 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.526 5.526 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.026 3.974 25 H 0.089 0.911 26 C -0.217 4.217 27 O -0.291 6.291 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.225 0.775 36 H 0.227 0.773 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.103 0.897 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.350 12.626 16.619 21.546 hybrid contribution 0.288 0.016 -1.202 1.236 sum -5.063 12.642 15.417 20.571 Atomic orbital electron populations 1.21775 0.93118 1.03096 1.02408 1.23140 0.95261 0.95130 0.85052 0.91334 1.23347 0.95526 1.01157 0.98405 1.22832 0.98505 0.97724 0.96201 0.89210 1.21316 1.01898 0.94641 0.79627 1.45147 1.78695 1.09599 1.07742 1.16070 0.78230 0.83392 0.82632 1.90884 1.58941 1.33473 1.64588 1.45508 1.75172 1.13501 1.04591 1.21574 0.99194 0.82252 0.94237 1.18354 0.92879 0.95632 0.87552 1.21818 0.97151 0.95834 1.03921 1.21819 0.97887 0.95326 1.03720 1.20960 1.48158 0.93443 0.91878 0.92458 1.24875 0.94963 0.96360 0.97307 1.69795 1.49935 1.26613 1.06219 0.86628 0.79001 0.84002 0.78194 1.20275 1.21352 1.20279 1.22611 0.84871 0.97166 0.92721 0.91138 1.22082 1.02544 0.95752 1.01316 1.88911 1.27733 1.73577 1.38838 0.91899 0.91071 0.91682 0.90032 0.89800 0.91337 0.91239 0.77518 0.77261 0.92999 0.93000 0.97587 0.89662 0.95471 0.95460 0.89657 0.97583 0.92980 0.90619 0.91966 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.66 37.16 0.36 -0.69 16 2 C 0.07 0.58 3.98 -25.55 -0.10 0.48 16 3 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 4 C -0.15 -1.16 5.93 -24.60 -0.15 -1.30 16 5 C -0.13 -1.11 3.08 -89.09 -0.27 -1.38 16 6 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 7 C 0.15 1.68 3.80 -4.04 -0.02 1.66 16 8 N -0.75 -9.62 5.42 -65.22 -0.35 -9.97 16 9 C 0.70 12.40 8.57 -86.91 -0.74 11.66 16 10 O -0.60 -13.12 16.34 5.29 0.09 -13.04 16 11 N -0.73 -13.18 4.96 -65.23 -0.32 -13.50 16 12 C 0.15 3.25 4.50 -4.04 -0.02 3.23 16 13 C 0.06 1.31 0.50 -155.65 -0.08 1.23 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 16 C -0.51 -13.30 8.01 -34.44 -0.28 -13.57 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 19 N -0.89 -23.61 9.35 55.43 0.52 -23.09 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.08 0.74 4.06 -26.15 -0.11 0.63 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 C -0.16 -1.40 8.39 37.16 0.31 -1.08 16 27 O -0.37 -3.82 10.89 -35.23 -0.38 -4.20 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.77 7.71 -51.93 -0.40 0.37 16 33 H 0.07 0.87 6.93 -51.93 -0.36 0.51 16 34 H 0.07 0.82 6.52 -51.93 -0.34 0.48 16 35 H 0.39 3.94 8.40 -40.82 -0.34 3.60 16 36 H 0.39 6.28 6.18 -40.82 -0.25 6.03 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 40 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 44 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.08 0.62 6.76 -51.93 -0.35 0.27 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.68 6.81 -51.93 -0.35 0.33 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -29.97 368.53 -8.86 -38.83 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.36 Total: 6.41 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.58 Total: -2.73 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.16 Total: -46.57 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.30 Total: -17.24 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.97 -8.86 -38.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413614708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.941 kcal (2) G-P(sol) polarization free energy of solvation -29.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds