Wall clock time and date at job start Fri Apr 10 2020 20:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 110.55027 * 2 1 4 4 C 1.55221 * 110.64739 * 237.05509 * 2 1 3 5 5 C 1.54810 * 101.98684 * 204.56192 * 4 2 1 6 6 H 1.08994 * 110.49059 * 261.99303 * 5 4 2 7 7 C 1.53005 * 110.48787 * 139.48329 * 5 4 2 8 8 N 1.46496 * 109.47401 * 68.24164 * 7 5 4 9 9 C 1.34773 * 119.99973 * 179.97438 * 8 7 5 10 10 O 1.21588 * 120.00151 * 359.73121 * 9 8 7 11 11 N 1.34784 * 119.99935 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72905 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46870 * 299.99298 * 13 12 11 15 15 C 1.53000 * 109.47499 * 59.99732 * 13 12 11 16 16 C 1.50708 * 109.46949 * 179.97438 * 13 12 11 17 17 H 1.07997 * 119.99690 * 359.97438 * 16 13 12 18 18 C 1.37875 * 120.00050 * 179.97438 * 16 13 12 19 19 N 1.31516 * 119.99915 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00185 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.46940 * 60.00393 * 20 18 16 22 22 H 1.48496 * 109.47341 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47121 * 300.00922 * 20 18 16 24 24 C 1.54102 * 104.30728 * 20.73844 * 5 4 2 25 25 H 1.08997 * 109.87872 * 242.52096 * 24 5 4 26 26 C 1.53005 * 109.87774 * 121.51773 * 24 5 4 27 27 O 1.43748 * 107.29173 * 2.09463 * 24 5 4 28 28 H 1.08995 * 109.47012 * 298.57841 * 1 2 3 29 29 H 1.09001 * 109.46924 * 58.57812 * 1 2 3 30 30 H 1.09003 * 109.46576 * 178.57713 * 1 2 3 31 31 H 1.09000 * 111.02143 * 86.37010 * 4 2 1 32 32 H 1.08998 * 110.89201 * 322.69439 * 4 2 1 33 33 H 1.09007 * 109.46761 * 308.24264 * 7 5 4 34 34 H 1.08997 * 109.46989 * 188.25079 * 7 5 4 35 35 H 0.97004 * 120.00009 * 0.02562 * 8 7 5 36 36 H 0.97005 * 119.99846 * 359.72693 * 11 9 8 37 37 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 38 38 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 39 39 H 1.09007 * 109.46830 * 60.00773 * 14 13 12 40 40 H 1.09005 * 109.46980 * 180.02562 * 14 13 12 41 41 H 1.08994 * 109.47292 * 300.00516 * 14 13 12 42 42 H 1.08992 * 109.46855 * 59.99654 * 15 13 12 43 43 H 1.08995 * 109.47095 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.46768 * 299.99888 * 15 13 12 45 45 H 0.97000 * 120.00246 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.46771 * 60.00368 * 26 24 5 47 47 H 1.08997 * 109.46492 * 179.97438 * 26 24 5 48 48 H 1.09001 * 109.46932 * 300.00147 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0207 0.0000 4 6 2.0773 -0.7899 -1.2189 5 6 3.4796 -1.2177 -0.7215 6 1 4.2423 -0.5365 -1.0985 7 6 3.7857 -2.6535 -1.1525 8 7 3.9461 -2.7030 -2.6078 9 6 4.2228 -3.8734 -3.2158 10 8 4.3442 -4.8875 -2.5561 11 7 4.3709 -3.9188 -4.5548 12 6 4.6776 -5.1901 -5.2151 13 6 4.7936 -4.9658 -6.7242 14 6 3.4699 -4.4184 -7.2616 15 6 5.9130 -3.9615 -7.0060 16 6 5.1098 -6.2735 -7.4035 17 1 5.2176 -7.1741 -6.8174 18 6 5.2614 -6.3198 -8.7731 19 7 5.1306 -5.2229 -9.4866 20 14 5.6540 -7.9404 -9.6150 21 1 4.5686 -8.9162 -9.3410 22 1 5.7665 -7.7229 -11.0796 23 1 6.9394 -8.4705 -9.0935 24 6 3.3840 -1.1240 0.8137 25 1 4.0872 -0.3782 1.1840 26 6 3.6936 -2.4861 1.4382 27 8 2.0384 -0.7335 1.1350 28 1 -0.3633 0.4916 0.9024 29 1 -0.3633 0.5358 -0.8770 30 1 -0.3632 -1.0274 -0.0255 31 1 2.1549 -0.1491 -2.0973 32 1 1.4564 -1.6610 -1.4282 33 1 2.9639 -3.3051 -0.8552 34 1 4.7060 -2.9881 -0.6738 35 1 3.8538 -1.8931 -3.1337 36 1 4.2743 -3.1097 -5.0811 37 1 5.6209 -5.5799 -4.8325 38 1 3.8805 -5.9056 -5.0139 39 1 3.2416 -3.4725 -6.7703 40 1 3.5523 -4.2591 -8.3368 41 1 2.6725 -5.1338 -7.0608 42 1 6.8559 -4.3516 -6.6231 43 1 5.9958 -3.8022 -8.0811 44 1 5.6846 -3.0158 -6.5147 45 1 5.2376 -5.2554 -10.4502 46 1 4.7013 -2.7933 1.1587 47 1 3.6245 -2.4121 2.5235 48 1 2.9758 -3.2228 1.0774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413614708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:43 Heat of formation + Delta-G solvation = -112.112970 kcal Electronic energy + Delta-G solvation = -24941.250839 eV Core-core repulsion = 21415.872949 eV Total energy + Delta-G solvation = -3525.377890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32982 -40.56505 -38.25058 -36.29564 -34.98744 -33.84245 -33.24092 -32.37133 -29.71800 -27.75796 -27.54332 -27.25005 -25.92708 -24.59570 -22.31429 -21.94051 -20.97232 -20.55280 -19.35449 -17.96334 -17.73194 -17.01614 -16.78182 -16.60994 -16.55964 -15.81363 -15.49676 -15.31224 -15.14298 -14.68053 -14.54484 -14.10958 -13.95579 -13.65890 -13.54509 -13.22223 -13.16614 -13.07666 -12.93221 -12.76951 -12.66663 -12.61323 -12.27289 -12.20158 -12.12567 -11.78750 -11.68550 -11.54253 -11.46472 -11.36168 -11.12159 -10.69648 -10.56849 -10.39388 -10.26339 -9.62736 -8.01280 -6.16772 1.44945 1.45987 1.52518 1.81678 2.22830 2.47200 2.85106 3.22352 3.37104 3.53784 3.58416 3.90850 4.02505 4.22591 4.28130 4.41388 4.43902 4.47038 4.54363 4.55602 4.67081 4.71066 4.73671 4.74276 4.88114 4.96761 5.01357 5.06058 5.07957 5.12727 5.16463 5.20580 5.22120 5.28508 5.32377 5.40287 5.54683 5.65184 5.68436 5.69205 6.06020 6.10146 6.17443 6.23820 6.45333 6.87377 7.19395 7.50866 7.66421 8.97471 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.031852 B = 0.002641 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.856139 B =10600.323124 C =11012.514272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.085 0.915 4 C -0.145 4.145 5 C -0.122 4.122 6 H 0.112 0.888 7 C 0.150 3.850 8 N -0.732 5.732 9 C 0.695 3.305 10 O -0.643 6.643 11 N -0.726 5.726 12 C 0.168 3.832 13 C 0.053 3.947 14 C -0.119 4.119 15 C -0.120 4.120 16 C -0.530 4.530 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.899 5.899 20 Si 0.944 3.056 21 H -0.278 1.278 22 H -0.282 1.282 23 H -0.277 1.277 24 C 0.083 3.917 25 H 0.088 0.912 26 C -0.160 4.160 27 O -0.395 6.395 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.406 0.594 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.062 0.938 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.064 0.936 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 15.680 16.216 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.103 0.897 4 C -0.182 4.182 5 C -0.141 4.141 6 H 0.131 0.869 7 C 0.026 3.974 8 N -0.389 5.389 9 C 0.395 3.605 10 O -0.526 6.526 11 N -0.381 5.381 12 C 0.043 3.957 13 C 0.052 3.948 14 C -0.177 4.177 15 C -0.178 4.178 16 C -0.569 4.569 17 H 0.062 0.938 18 C -0.171 4.171 19 N -0.538 5.538 20 Si 0.771 3.229 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.203 1.203 24 C 0.025 3.975 25 H 0.106 0.894 26 C -0.217 4.217 27 O -0.315 6.315 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.246 0.754 36 H 0.242 0.758 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.083 0.917 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.388 14.772 16.810 23.018 hybrid contribution 0.267 -0.614 -1.198 1.372 sum -5.121 14.159 15.612 21.690 Atomic orbital electron populations 1.21797 0.92803 1.02529 1.03252 1.23319 0.95656 0.95647 0.84338 0.89714 1.23349 0.94736 1.00911 0.99242 1.22778 0.99483 0.95812 0.96064 0.86935 1.21389 1.01044 0.96584 0.78336 1.44945 1.76812 1.08637 1.08479 1.16215 0.77978 0.84088 0.82243 1.90860 1.60783 1.35535 1.65404 1.45185 1.75341 1.12686 1.04889 1.21103 0.97643 0.83465 0.93457 1.18344 0.93530 0.94710 0.88185 1.21659 0.96325 0.97085 1.02645 1.21661 0.97137 0.96547 1.02414 1.21262 1.48722 0.94465 0.92454 0.93807 1.25432 0.94992 0.98855 0.97786 1.69895 1.49998 1.27617 1.06241 0.85835 0.78566 0.81036 0.77481 1.20323 1.20758 1.20290 1.22708 0.84744 0.97245 0.92850 0.89448 1.22078 1.02296 0.95766 1.01583 1.88897 1.28496 1.74073 1.40029 0.91875 0.89383 0.92994 0.87865 0.91463 0.93112 0.91739 0.75407 0.75768 0.94754 0.94858 0.94352 0.91888 0.96482 0.96397 0.91889 0.94329 0.93012 0.90133 0.91668 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.66 71.98 0.70 -1.17 16 2 C 0.07 0.93 3.98 31.36 0.12 1.06 16 3 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 4 C -0.14 -1.91 5.93 31.97 0.19 -1.72 16 5 C -0.12 -1.72 3.08 -9.80 -0.03 -1.75 16 6 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 7 C 0.15 3.16 3.80 86.38 0.33 3.49 16 8 N -0.73 -17.08 5.42 -478.53 -2.59 -19.68 16 9 C 0.70 23.93 8.57 179.05 1.53 25.47 16 10 O -0.64 -28.24 16.34 -3.99 -0.07 -28.31 16 11 N -0.73 -24.97 4.96 -478.53 -2.37 -27.34 16 12 C 0.17 7.24 4.50 86.38 0.39 7.63 16 13 C 0.05 2.44 0.50 -52.92 -0.03 2.41 16 14 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 15 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 16 C -0.53 -28.15 8.01 25.60 0.21 -27.94 16 17 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 18 C 0.03 1.53 5.15 84.65 0.44 1.97 16 19 N -0.90 -47.68 9.35 21.45 0.20 -47.48 16 20 Si 0.94 42.61 29.54 68.60 2.03 44.63 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 C 0.08 1.28 4.06 30.97 0.13 1.40 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 C -0.16 -2.70 8.39 71.98 0.60 -2.10 16 27 O -0.39 -7.54 10.89 -148.98 -1.62 -9.17 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.13 7.71 -2.39 -0.02 1.12 16 33 H 0.05 1.28 6.93 -2.38 -0.02 1.26 16 34 H 0.06 1.46 6.52 -2.39 -0.02 1.44 16 35 H 0.41 6.81 8.40 -92.71 -0.78 6.03 16 36 H 0.41 11.78 6.18 -92.70 -0.57 11.21 16 37 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 40 H 0.06 3.08 6.07 -2.38 -0.01 3.06 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 44 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 45 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 46 H 0.08 1.25 6.76 -2.39 -0.02 1.23 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.05 1.06 6.81 -2.39 -0.02 1.04 16 Total: -1.00 -65.01 368.53 0.90 -64.10 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.40 Total: 23.81 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.74 Total: -0.58 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -4.77 Total: -94.50 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.69 Total: -37.48 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -65.01 0.90 -64.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413614708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.009 kcal (2) G-P(sol) polarization free energy of solvation -65.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds