Wall clock time and date at job start Fri Apr 10 2020 20:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52368 * 2 1 4 4 C 1.53039 * 109.49691 * 239.91795 * 2 1 3 5 5 C 1.53046 * 109.53536 * 178.68733 * 4 2 1 6 6 C 1.52757 * 109.38638 * 61.24037 * 5 4 2 7 7 N 1.46930 * 109.00757 * 305.58780 * 6 5 4 8 8 C 1.34773 * 120.62720 * 233.58887 * 7 6 5 9 9 O 1.21590 * 119.99660 * 185.99393 * 8 7 6 10 10 N 1.34773 * 120.00618 * 5.98745 * 8 7 6 11 11 C 1.46496 * 120.00420 * 174.94337 * 10 8 7 12 12 C 1.53004 * 109.47269 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.46946 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47154 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99840 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00158 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00032 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99640 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46944 * 90.00610 * 18 16 14 20 20 H 1.48497 * 109.46736 * 210.00205 * 18 16 14 21 21 H 1.48496 * 109.47204 * 330.00097 * 18 16 14 22 22 C 1.46920 * 118.73884 * 53.30624 * 7 6 5 23 23 H 1.09010 * 109.58683 * 66.57667 * 22 7 6 24 24 C 1.52993 * 109.58842 * 186.85424 * 22 7 6 25 25 C 1.52999 * 109.46787 * 65.93311 * 24 22 7 26 26 O 1.42904 * 109.47281 * 185.73400 * 25 24 22 27 27 H 1.09004 * 109.46774 * 299.91850 * 1 2 3 28 28 H 1.08998 * 109.46869 * 59.91730 * 1 2 3 29 29 H 1.09003 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46005 * 298.70268 * 4 2 1 31 31 H 1.08997 * 109.46105 * 58.66447 * 4 2 1 32 32 H 1.08997 * 109.49371 * 181.31949 * 5 4 2 33 33 H 1.09002 * 109.49397 * 301.37401 * 5 4 2 34 34 H 1.08999 * 109.50918 * 185.71023 * 6 5 4 35 35 H 1.09003 * 109.43330 * 65.42234 * 6 5 4 36 36 H 0.97003 * 119.99638 * 354.94015 * 10 8 7 37 37 H 1.09004 * 109.47321 * 59.99760 * 11 10 8 38 38 H 1.09002 * 109.47299 * 299.99832 * 11 10 8 39 39 H 1.08998 * 109.47012 * 299.99653 * 12 11 10 40 40 H 1.09000 * 109.46628 * 59.99748 * 12 11 10 41 41 H 1.09002 * 109.47534 * 299.99826 * 13 12 11 42 42 H 1.09004 * 109.47409 * 59.99952 * 13 12 11 43 43 H 0.97003 * 119.99716 * 179.97438 * 17 16 14 44 44 H 1.09002 * 109.47479 * 185.93090 * 24 22 7 45 45 H 1.08997 * 109.47521 * 305.93254 * 24 22 7 46 46 H 1.08997 * 109.47366 * 305.73399 * 25 24 22 47 47 H 1.09004 * 109.47396 * 65.73867 * 25 24 22 48 48 H 0.96700 * 114.00641 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 6 4.1056 -1.4217 -0.0331 7 7 3.5046 -0.8292 1.1697 8 6 4.2812 -0.3856 2.1779 9 8 3.7723 0.0018 3.2120 10 7 5.6218 -0.3715 2.0401 11 6 6.4601 0.2125 3.0900 12 6 7.9322 0.1007 2.6885 13 6 8.8076 0.7112 3.7847 14 6 10.2576 0.6016 3.3890 15 1 10.5277 0.1420 2.4497 16 6 11.2393 1.0880 4.2261 17 7 10.9104 1.6472 5.3700 18 14 13.0367 0.9514 3.7357 19 1 13.4350 2.1617 2.9730 20 1 13.8752 0.8371 4.9559 21 1 13.2285 -0.2530 2.8886 22 6 2.0414 -0.7238 1.2496 23 1 1.6054 -1.7216 1.3006 24 6 1.6518 0.0705 2.4979 25 6 2.1328 1.5157 2.3535 26 8 1.8886 2.2230 3.5709 27 1 -0.3633 0.5126 0.8908 28 1 -0.3633 0.5151 -0.8892 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6967 -1.7573 -1.2352 31 1 1.6582 -0.2245 -2.1389 32 1 3.9335 -1.1897 -2.1670 33 1 3.9160 0.3388 -1.2546 34 1 5.1895 -1.3160 0.0101 35 1 3.8412 -2.4775 -0.0914 36 1 6.0316 -0.7481 1.2456 37 1 6.2971 -0.3233 4.0251 38 1 6.1980 1.2623 3.2223 39 1 8.1940 -0.9491 2.5565 40 1 8.0954 0.6362 1.7532 41 1 8.5457 1.7611 3.9163 42 1 8.6445 0.1760 4.7202 43 1 11.6012 1.9891 5.9590 44 1 0.5679 0.0581 2.6129 45 1 2.1153 -0.3808 3.3751 46 1 3.2011 1.5232 2.1370 47 1 1.5935 1.9984 1.5384 48 1 2.1690 3.1482 3.5514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596265607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:41:19 Heat of formation + Delta-G solvation = -72.240767 kcal Electronic energy + Delta-G solvation = -25574.004399 eV Core-core repulsion = 22050.355498 eV Total energy + Delta-G solvation = -3523.648902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.08961 -38.11286 -36.73090 -35.44480 -34.32057 -33.19222 -32.85589 -31.11035 -29.39980 -26.98207 -26.60146 -25.13980 -23.29504 -22.86294 -21.62219 -20.57976 -20.40472 -19.21961 -17.74291 -17.10877 -16.51663 -16.11241 -15.99711 -15.28578 -14.86701 -14.75765 -14.55207 -14.42656 -14.14381 -13.87755 -13.49112 -13.30150 -12.96847 -12.80562 -12.30741 -12.29270 -12.04431 -11.89079 -11.78056 -11.65566 -11.54463 -11.26256 -11.05994 -10.90546 -10.68023 -10.60704 -10.58608 -10.52814 -9.88298 -9.64446 -9.52017 -9.13535 -8.92847 -8.66814 -8.43711 -8.36917 -6.01488 -4.04633 2.67596 3.30546 3.32734 3.37004 3.39709 3.94780 4.33336 4.42444 4.44876 4.47039 4.57613 4.69122 4.95068 5.04379 5.12910 5.23940 5.30703 5.34238 5.37904 5.42734 5.47031 5.53787 5.59030 5.62672 5.72077 5.74565 5.79292 5.82814 5.84592 5.91717 6.10498 6.16233 6.19885 6.34487 6.50697 6.63335 6.76539 6.88549 7.05267 7.06199 7.64273 7.77329 7.86644 7.97470 8.10409 8.38438 8.80760 9.02090 9.59486 11.09794 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.023120 B = 0.003008 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.760211 B = 9307.018279 C =10158.011536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.137 4.137 6 C 0.112 3.888 7 N -0.632 5.632 8 C 0.698 3.302 9 O -0.568 6.568 10 N -0.744 5.744 11 C 0.135 3.865 12 C -0.120 4.120 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.176 3.824 23 H 0.072 0.928 24 C -0.129 4.129 25 C 0.096 3.904 26 O -0.568 6.568 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.390 0.610 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.056 0.944 45 H 0.125 0.875 46 H 0.051 0.949 47 H 0.020 0.980 48 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.619 -4.888 -15.080 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.012 4.012 7 N -0.371 5.371 8 C 0.400 3.600 9 O -0.446 6.446 10 N -0.401 5.401 11 C 0.012 3.988 12 C -0.158 4.158 13 C -0.013 4.013 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.072 3.928 23 H 0.090 0.910 24 C -0.166 4.166 25 C 0.018 3.982 26 O -0.372 6.372 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.142 0.858 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -21.124 -5.096 -13.949 25.822 hybrid contribution 1.554 0.341 -0.995 1.877 sum -19.570 -4.755 -14.945 25.079 Atomic orbital electron populations 1.21817 0.94349 1.02053 1.02154 1.21692 0.96089 1.00495 0.94712 0.90429 1.21575 0.95106 1.00807 0.97590 1.21862 0.96287 1.01638 0.97711 1.21523 0.97914 0.97204 0.84563 1.47320 1.06055 1.65628 1.18078 1.16030 0.81631 0.78788 0.83557 1.90955 1.71286 1.54048 1.28309 1.45736 1.04630 1.65070 1.24635 1.21483 0.90093 0.97732 0.89478 1.21883 0.91593 1.01014 1.01307 1.19018 0.93311 0.96107 0.92860 1.21204 0.91387 1.38844 1.04642 0.92695 1.25029 0.99150 0.95290 0.94989 1.69967 1.33242 1.39676 1.10347 0.86589 0.84997 0.78402 0.77964 1.20678 1.21196 1.19906 1.21043 0.78288 0.98679 0.94784 0.90974 1.22151 0.99684 0.94985 0.99809 1.22309 0.99108 0.91998 0.84770 1.86463 1.86197 1.27024 1.37520 0.92020 0.92473 0.92492 0.91749 0.91685 0.90621 0.91393 0.90247 0.91404 0.77381 0.91879 0.92181 0.92842 0.92932 0.96305 0.96233 0.92920 0.92605 0.85773 0.93068 0.96234 0.78376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.97 37.16 0.33 -0.69 16 2 C -0.11 -0.91 1.98 -90.50 -0.18 -1.09 16 3 H 0.08 0.74 6.15 -51.93 -0.32 0.42 16 4 C -0.11 -0.76 5.17 -26.69 -0.14 -0.90 16 5 C -0.14 -0.95 6.06 -26.83 -0.16 -1.11 16 6 C 0.11 0.93 6.41 -3.93 -0.03 0.90 16 7 N -0.63 -7.18 2.93 -171.17 -0.50 -7.69 16 8 C 0.70 10.47 6.76 -86.92 -0.59 9.88 16 9 O -0.57 -10.34 10.38 5.08 0.05 -10.29 16 10 N -0.74 -10.88 5.47 -65.23 -0.36 -11.24 16 11 C 0.14 2.41 5.68 -4.04 -0.02 2.39 16 12 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 13 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.18 1.83 2.67 -67.60 -0.18 1.65 16 23 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 24 C -0.13 -1.68 4.45 -26.73 -0.12 -1.80 16 25 C 0.10 1.31 5.19 37.16 0.19 1.50 16 26 O -0.57 -8.51 13.66 -35.44 -0.48 -8.99 16 27 H 0.06 0.48 6.76 -51.93 -0.35 0.13 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.63 5.56 -51.93 -0.29 0.34 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.39 4.74 5.93 -40.82 -0.24 4.50 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.06 0.66 6.93 -51.93 -0.36 0.30 16 45 H 0.12 2.05 5.57 -53.78 -0.30 1.75 16 46 H 0.05 0.80 5.27 -51.93 -0.27 0.53 16 47 H 0.02 0.23 6.57 -51.93 -0.34 -0.11 16 48 H 0.37 4.03 9.12 45.56 0.42 4.45 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -33.04 362.64 -9.21 -42.25 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.52 Total: 4.82 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.58 Total: -4.65 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.12 Total: -45.07 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.43 Total: -19.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.04 -9.21 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596265607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.989 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds