Wall clock time and date at job start Fri Apr 10 2020 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00015 * 2 1 4 4 H 1.09004 * 109.47156 * 329.99898 * 3 2 1 5 5 C 1.52998 * 109.47345 * 89.99802 * 3 2 1 6 6 C 1.53002 * 109.47006 * 209.99904 * 3 2 1 7 7 C 1.50703 * 109.47144 * 65.00257 * 6 3 2 8 8 O 1.21283 * 119.99683 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99789 * 179.97438 * 7 6 3 10 10 C 1.48415 * 127.82855 * 0.02600 * 9 7 6 11 11 C 1.54385 * 104.48688 * 219.58494 * 10 9 7 12 12 H 1.09002 * 110.34590 * 95.02774 * 11 10 9 13 13 C 1.52997 * 110.34047 * 217.17999 * 11 10 9 14 14 C 1.54281 * 105.05132 * 336.10309 * 11 10 9 15 15 C 1.53001 * 110.34241 * 241.18419 * 14 11 10 16 16 C 1.53003 * 110.34526 * 119.03372 * 14 11 10 17 17 N 1.46505 * 109.47191 * 180.02562 * 16 14 11 18 18 C 1.36936 * 119.99643 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00365 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99684 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47580 * 89.99539 * 22 20 18 24 24 H 1.48505 * 109.47190 * 210.00147 * 22 20 18 25 25 H 1.48508 * 109.47136 * 329.99633 * 22 20 18 26 26 C 1.48150 * 127.83335 * 179.97438 * 9 7 6 27 27 H 1.08999 * 109.46835 * 300.00308 * 1 2 3 28 28 H 1.09010 * 109.46904 * 59.99961 * 1 2 3 29 29 H 1.08992 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47231 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.46889 * 300.00348 * 5 3 2 32 32 H 1.09004 * 109.46916 * 59.99948 * 5 3 2 33 33 H 1.08997 * 109.47125 * 304.99941 * 6 3 2 34 34 H 1.09007 * 109.47118 * 184.99698 * 6 3 2 35 35 H 1.08997 * 110.44874 * 100.84735 * 10 9 7 36 36 H 1.09004 * 110.48780 * 338.33264 * 10 9 7 37 37 H 1.09005 * 109.47312 * 177.11975 * 13 11 10 38 38 H 1.08998 * 109.47322 * 297.11942 * 13 11 10 39 39 H 1.09005 * 109.47284 * 57.12334 * 13 11 10 40 40 H 1.09001 * 109.47416 * 60.00373 * 15 14 11 41 41 H 1.09004 * 109.47417 * 179.97438 * 15 14 11 42 42 H 1.08998 * 109.47229 * 299.99650 * 15 14 11 43 43 H 1.09001 * 109.46306 * 299.99875 * 16 14 11 44 44 H 1.08995 * 109.46915 * 59.99782 * 16 14 11 45 45 H 0.96995 * 120.00136 * 359.97438 * 17 16 14 46 46 H 0.96996 * 120.00179 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.41112 * 21.62467 * 26 9 7 48 48 H 1.09001 * 110.50499 * 259.24502 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1417 0.9236 -2.1733 8 8 2.0187 0.7336 -2.5901 9 7 4.1953 0.8311 -3.0087 10 6 5.6311 1.0266 -2.6880 11 6 6.1990 1.7864 -3.9061 12 1 6.1982 2.8599 -3.7172 13 6 7.6163 1.3036 -4.2205 14 6 5.2458 1.4459 -5.0705 15 6 6.0054 0.7261 -6.1866 16 6 4.5895 2.7184 -5.6101 17 7 3.6891 2.3734 -6.7131 18 6 2.9860 3.3570 -7.3561 19 1 3.0949 4.3869 -7.0499 20 6 2.1333 3.0303 -8.4016 21 7 2.0002 1.7750 -8.7745 22 14 1.1748 4.3720 -9.2792 23 1 1.9741 4.8858 -10.4203 24 1 -0.1068 3.8160 -9.7831 25 1 0.8948 5.4809 -8.3319 26 6 4.1829 0.5101 -4.4549 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 2.6614 2.7670 1.4424 31 1 1.2569 1.8014 1.9562 32 1 2.8830 1.0775 1.9563 33 1 3.9931 0.5051 -0.2617 34 1 3.8428 2.2370 -0.6444 35 1 6.1302 0.0644 -2.5736 36 1 5.7419 1.6233 -1.7825 37 1 7.9838 1.8116 -5.1122 38 1 8.2716 1.5277 -3.3787 39 1 7.6035 0.2277 -4.3946 40 1 6.4347 -0.1970 -5.7973 41 1 5.3194 0.4922 -7.0008 42 1 6.8032 1.3700 -6.5570 43 1 4.0208 3.1993 -4.8141 44 1 5.3601 3.4004 -5.9693 45 1 3.5909 1.4484 -6.9879 46 1 1.4046 1.5468 -9.5052 47 1 3.2014 0.7167 -4.8818 48 1 4.4549 -0.5329 -4.6169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180823744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:27 Heat of formation + Delta-G solvation = -72.728813 kcal Electronic energy + Delta-G solvation = -25752.299420 eV Core-core repulsion = 22228.629354 eV Total energy + Delta-G solvation = -3523.670065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22291 -38.76620 -37.40971 -34.67939 -33.23249 -32.78198 -31.48785 -29.63332 -28.52313 -26.80612 -26.47060 -25.54150 -25.25430 -23.26997 -21.60500 -21.02584 -19.12545 -18.27331 -17.34557 -16.93865 -16.53780 -15.87538 -15.46502 -15.12517 -14.81554 -14.56107 -14.29238 -14.02287 -13.78075 -13.45611 -13.05726 -13.00941 -12.82582 -12.69140 -12.61892 -12.20594 -12.02225 -11.86216 -11.77773 -11.47357 -11.45384 -11.36803 -11.15344 -10.94033 -10.80433 -10.77489 -10.41940 -10.26511 -10.14603 -9.84941 -9.63567 -9.55349 -9.46963 -8.81610 -8.43058 -6.84930 -5.70362 -2.98230 2.92791 3.14786 3.47640 3.52638 3.54629 3.77191 4.48202 4.60997 4.67947 4.69435 4.85210 4.94742 5.05909 5.20245 5.30736 5.32857 5.36061 5.42121 5.45565 5.45962 5.52223 5.55089 5.57046 5.61779 5.69729 5.78270 5.80088 5.81394 5.90964 5.97615 6.04202 6.06967 6.16773 6.25310 6.28699 6.43329 6.48260 6.61727 6.74472 6.85344 6.94099 7.21779 7.75489 7.83653 8.46555 8.48757 9.59862 10.17583 10.52255 11.52687 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.004519 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.075028 B = 6194.089649 C = 7844.783375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.099 3.901 4 H 0.070 0.930 5 C -0.173 4.173 6 C -0.134 4.134 7 C 0.533 3.467 8 O -0.527 6.527 9 N -0.623 5.623 10 C 0.106 3.894 11 C -0.099 4.099 12 H 0.081 0.919 13 C -0.141 4.141 14 C -0.076 4.076 15 C -0.134 4.134 16 C 0.170 3.830 17 N -0.729 5.729 18 C -0.238 4.238 19 H 0.068 0.932 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.114 3.886 27 H 0.033 0.967 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.016 0.984 44 H 0.019 0.981 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.097 0.903 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.948 -2.616 19.409 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.040 3.960 4 H 0.088 0.912 5 C -0.231 4.231 6 C -0.174 4.174 7 C 0.322 3.678 8 O -0.402 6.402 9 N -0.358 5.358 10 C -0.017 4.017 11 C -0.118 4.118 12 H 0.099 0.901 13 C -0.199 4.199 14 C -0.077 4.077 15 C -0.191 4.191 16 C 0.042 3.958 17 N -0.374 5.374 18 C -0.369 4.369 19 H 0.086 0.914 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.209 1.209 26 C -0.008 4.008 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.037 0.963 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.116 0.884 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.252 -2.725 19.223 21.096 hybrid contribution -0.701 0.706 -0.611 1.168 sum 7.552 -2.019 18.612 20.187 Atomic orbital electron populations 1.22698 0.81021 1.02391 0.99791 1.87867 1.19829 1.26964 1.94950 1.21796 0.93735 0.85971 0.94484 0.91235 1.22291 1.02489 1.01562 0.96748 1.21804 0.98873 1.04039 0.92668 1.20067 0.83538 0.77051 0.87179 1.90737 1.22538 1.49484 1.77454 1.49012 1.06121 1.70091 1.10575 1.22518 0.81246 0.99856 0.98107 1.22142 0.95013 1.00405 0.94286 0.90085 1.21889 0.94916 1.01611 1.01452 1.21707 0.94440 0.97045 0.94499 1.21867 1.00160 0.98992 0.98089 1.20636 0.92148 0.92379 0.90632 1.42391 1.50234 1.07717 1.37031 1.19196 1.17886 0.89140 1.10656 0.91392 1.24704 1.00500 0.96168 0.99483 1.69648 1.41624 1.15708 1.31170 0.86209 0.79476 0.80988 0.79640 1.21798 1.21796 1.20867 1.22495 1.01765 0.97385 0.79169 0.94798 0.93320 0.90090 0.91512 0.92224 0.91783 0.88409 0.87955 0.91170 0.90781 0.91776 0.93113 0.92126 0.93149 0.91329 0.92235 0.96600 0.96296 0.78089 0.93562 0.88435 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.82 101.05 1.09 1.55 16 2 O -0.38 -5.33 9.58 -49.66 -0.48 -5.81 16 3 C 0.10 1.19 2.27 -26.73 -0.06 1.13 16 4 H 0.07 0.93 7.60 -51.93 -0.39 0.53 16 5 C -0.17 -1.50 9.53 37.16 0.35 -1.14 16 6 C -0.13 -1.54 4.39 -27.88 -0.12 -1.66 16 7 C 0.53 8.76 7.80 -10.98 -0.09 8.68 16 8 O -0.53 -11.11 15.69 -8.87 -0.14 -11.25 16 9 N -0.62 -9.48 3.32 -169.06 -0.56 -10.04 16 10 C 0.11 1.16 6.48 -2.26 -0.01 1.15 16 11 C -0.10 -1.18 3.30 -89.22 -0.29 -1.47 16 12 H 0.08 0.98 7.71 -51.93 -0.40 0.58 16 13 C -0.14 -1.35 7.93 37.16 0.29 -1.06 16 14 C -0.08 -1.20 0.73 -153.09 -0.11 -1.31 16 15 C -0.13 -2.02 7.10 37.16 0.26 -1.75 16 16 C 0.17 3.49 4.95 -4.04 -0.02 3.47 16 17 N -0.73 -18.74 4.79 -59.91 -0.29 -19.02 16 18 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 22 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.11 1.98 5.92 -2.39 -0.01 1.97 16 27 H 0.03 0.33 7.87 -51.93 -0.41 -0.08 16 28 H 0.05 0.66 8.09 -51.92 -0.42 0.24 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.92 7.96 -51.92 -0.41 0.51 16 35 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 36 H 0.07 0.63 7.32 -51.93 -0.38 0.25 16 37 H 0.06 0.65 6.89 -51.93 -0.36 0.29 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.56 6.69 -51.93 -0.35 0.22 16 40 H 0.05 0.63 6.72 -51.93 -0.35 0.28 16 41 H 0.07 1.25 6.75 -51.93 -0.35 0.89 16 42 H 0.06 0.85 6.84 -51.93 -0.36 0.50 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.38 10.31 5.99 -40.82 -0.24 10.07 16 46 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 47 H 0.10 2.16 6.94 -51.93 -0.36 1.80 16 48 H 0.06 1.02 7.83 -51.93 -0.41 0.62 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -34.68 374.05 -7.60 -42.28 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.51 Total: 6.18 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 1.04 Total: 2.07 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.12 Total: -57.16 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.61 Total: -17.06 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.68 -7.60 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180823744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.445 kcal (2) G-P(sol) polarization free energy of solvation -34.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds