Wall clock time and date at job start Fri Apr 10 2020 20:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 114.00015 * 2 1 4 4 H 1.09004 * 109.47156 * 329.99898 * 3 2 1 5 5 C 1.52998 * 109.47345 * 89.99802 * 3 2 1 6 6 C 1.53002 * 109.47006 * 209.99904 * 3 2 1 7 7 C 1.50703 * 109.47144 * 65.00257 * 6 3 2 8 8 O 1.21283 * 119.99683 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99789 * 179.97438 * 7 6 3 10 10 C 1.48415 * 127.82855 * 0.02600 * 9 7 6 11 11 C 1.54385 * 104.48688 * 219.58494 * 10 9 7 12 12 H 1.09002 * 110.34590 * 95.02774 * 11 10 9 13 13 C 1.52997 * 110.34047 * 217.17999 * 11 10 9 14 14 C 1.54281 * 105.05132 * 336.10309 * 11 10 9 15 15 C 1.53001 * 110.34241 * 241.18419 * 14 11 10 16 16 C 1.53003 * 110.34526 * 119.03372 * 14 11 10 17 17 N 1.46505 * 109.47191 * 180.02562 * 16 14 11 18 18 C 1.36936 * 119.99643 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00365 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99684 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00162 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00087 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47580 * 89.99539 * 22 20 18 24 24 H 1.48505 * 109.47190 * 210.00147 * 22 20 18 25 25 H 1.48508 * 109.47136 * 329.99633 * 22 20 18 26 26 C 1.48150 * 127.83335 * 179.97438 * 9 7 6 27 27 H 1.08999 * 109.46835 * 300.00308 * 1 2 3 28 28 H 1.09010 * 109.46904 * 59.99961 * 1 2 3 29 29 H 1.08992 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47231 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.46889 * 300.00348 * 5 3 2 32 32 H 1.09004 * 109.46916 * 59.99948 * 5 3 2 33 33 H 1.08997 * 109.47125 * 304.99941 * 6 3 2 34 34 H 1.09007 * 109.47118 * 184.99698 * 6 3 2 35 35 H 1.08997 * 110.44874 * 100.84735 * 10 9 7 36 36 H 1.09004 * 110.48780 * 338.33264 * 10 9 7 37 37 H 1.09005 * 109.47312 * 177.11975 * 13 11 10 38 38 H 1.08998 * 109.47322 * 297.11942 * 13 11 10 39 39 H 1.09005 * 109.47284 * 57.12334 * 13 11 10 40 40 H 1.09001 * 109.47416 * 60.00373 * 15 14 11 41 41 H 1.09004 * 109.47417 * 179.97438 * 15 14 11 42 42 H 1.08998 * 109.47229 * 299.99650 * 15 14 11 43 43 H 1.09001 * 109.46306 * 299.99875 * 16 14 11 44 44 H 1.08995 * 109.46915 * 59.99782 * 16 14 11 45 45 H 0.96995 * 120.00136 * 359.97438 * 17 16 14 46 46 H 0.96996 * 120.00179 * 180.02562 * 21 20 18 47 47 H 1.08999 * 110.41112 * 21.62467 * 26 9 7 48 48 H 1.09001 * 110.50499 * 259.24502 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3590 1.2632 -0.7212 7 6 3.1417 0.9236 -2.1733 8 8 2.0187 0.7336 -2.5901 9 7 4.1953 0.8311 -3.0087 10 6 5.6311 1.0266 -2.6880 11 6 6.1990 1.7864 -3.9061 12 1 6.1982 2.8599 -3.7172 13 6 7.6163 1.3036 -4.2205 14 6 5.2458 1.4459 -5.0705 15 6 6.0054 0.7261 -6.1866 16 6 4.5895 2.7184 -5.6101 17 7 3.6891 2.3734 -6.7131 18 6 2.9860 3.3570 -7.3561 19 1 3.0949 4.3869 -7.0499 20 6 2.1333 3.0303 -8.4016 21 7 2.0002 1.7750 -8.7745 22 14 1.1748 4.3720 -9.2792 23 1 1.9741 4.8858 -10.4203 24 1 -0.1068 3.8160 -9.7831 25 1 0.8948 5.4809 -8.3319 26 6 4.1829 0.5101 -4.4549 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 2.6614 2.7670 1.4424 31 1 1.2569 1.8014 1.9562 32 1 2.8830 1.0775 1.9563 33 1 3.9931 0.5051 -0.2617 34 1 3.8428 2.2370 -0.6444 35 1 6.1302 0.0644 -2.5736 36 1 5.7419 1.6233 -1.7825 37 1 7.9838 1.8116 -5.1122 38 1 8.2716 1.5277 -3.3787 39 1 7.6035 0.2277 -4.3946 40 1 6.4347 -0.1970 -5.7973 41 1 5.3194 0.4922 -7.0008 42 1 6.8032 1.3700 -6.5570 43 1 4.0208 3.1993 -4.8141 44 1 5.3601 3.4004 -5.9693 45 1 3.5909 1.4484 -6.9879 46 1 1.4046 1.5468 -9.5052 47 1 3.2014 0.7167 -4.8818 48 1 4.4549 -0.5329 -4.6169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180823744.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:26 Heat of formation + Delta-G solvation = -96.367206 kcal Electronic energy + Delta-G solvation = -25753.324457 eV Core-core repulsion = 22228.629354 eV Total energy + Delta-G solvation = -3524.695103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.43359 -39.90194 -38.56279 -36.47007 -34.66853 -33.73441 -33.14500 -31.21321 -29.50068 -28.00887 -27.57987 -26.78071 -26.54724 -25.11487 -22.67800 -22.22222 -20.30640 -19.72173 -19.09353 -17.96752 -17.83121 -16.96361 -16.72948 -16.65240 -16.17535 -15.87200 -15.54116 -15.33498 -15.23567 -14.86965 -14.55381 -14.35460 -13.91390 -13.84679 -13.44956 -13.21297 -13.08773 -12.98491 -12.90478 -12.88385 -12.80790 -12.62013 -12.57946 -12.35174 -12.28242 -12.10673 -11.96989 -11.70114 -11.56333 -11.25601 -11.15636 -10.97185 -10.82719 -10.53436 -9.67594 -9.01105 -7.97788 -5.25872 1.41784 1.44811 1.52773 1.70706 2.00662 2.52755 2.86212 3.34880 3.42620 3.62253 3.73436 3.80686 3.84948 4.17483 4.20045 4.25815 4.33689 4.37250 4.42980 4.44651 4.51220 4.56888 4.62877 4.68692 4.69535 4.76436 4.80029 4.84004 4.87611 4.89267 4.94058 5.01677 5.03400 5.10122 5.15592 5.24201 5.31287 5.34667 5.41570 5.46729 5.48518 5.69524 6.24572 6.27873 6.66958 7.24012 7.30777 8.07900 8.30953 9.25972 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.004519 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.075028 B = 6194.089649 C = 7844.783375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.401 6.401 3 C 0.090 3.910 4 H 0.044 0.956 5 C -0.163 4.163 6 C -0.123 4.123 7 C 0.518 3.482 8 O -0.591 6.591 9 N -0.625 5.625 10 C 0.105 3.895 11 C -0.091 4.091 12 H 0.082 0.918 13 C -0.136 4.136 14 C -0.068 4.068 15 C -0.126 4.126 16 C 0.170 3.830 17 N -0.740 5.740 18 C -0.247 4.247 19 H 0.071 0.929 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.973 3.027 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.273 1.273 26 C 0.115 3.885 27 H 0.059 0.941 28 H 0.021 0.979 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.027 0.973 42 H 0.069 0.931 43 H -0.002 1.002 44 H 0.025 0.975 45 H 0.375 0.625 46 H 0.251 0.749 47 H 0.037 0.963 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 -1.840 22.005 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.320 6.320 3 C 0.032 3.968 4 H 0.062 0.938 5 C -0.220 4.220 6 C -0.162 4.162 7 C 0.309 3.691 8 O -0.471 6.471 9 N -0.358 5.358 10 C -0.016 4.016 11 C -0.110 4.110 12 H 0.101 0.899 13 C -0.194 4.194 14 C -0.070 4.070 15 C -0.183 4.183 16 C 0.044 3.956 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.089 0.911 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.207 1.207 24 H -0.222 1.222 25 H -0.198 1.198 26 C -0.008 4.008 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.142 0.858 34 H 0.154 0.846 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.047 0.953 42 H 0.088 0.912 43 H 0.016 0.984 44 H 0.043 0.957 45 H 0.208 0.792 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.156 -1.917 21.858 24.615 hybrid contribution -1.570 0.470 -1.406 2.160 sum 9.586 -1.447 20.452 22.633 Atomic orbital electron populations 1.22737 0.80527 1.02994 0.99653 1.87813 1.20577 1.28443 1.95173 1.22006 0.93457 0.84730 0.96638 0.93817 1.22210 1.03112 1.02749 0.93918 1.21900 0.99273 1.06461 0.88560 1.21140 0.82812 0.75914 0.89197 1.90709 1.25159 1.52311 1.78883 1.49183 1.08181 1.69175 1.09302 1.22862 0.78088 1.01729 0.98910 1.22141 0.95499 1.00915 0.92472 0.89934 1.21865 0.93199 1.01838 1.02468 1.21613 0.94765 0.94365 0.96226 1.21817 0.99335 1.00594 0.96602 1.20771 0.91227 0.95023 0.88604 1.42593 1.50884 1.06775 1.38083 1.19611 1.17830 0.89889 1.10599 0.91113 1.25557 1.01982 0.98421 1.00713 1.69818 1.42589 1.17736 1.31805 0.85149 0.77675 0.78401 0.78602 1.20744 1.22236 1.19801 1.22288 0.99071 0.98386 0.81104 0.92283 0.96033 0.89218 0.89503 0.92070 0.90619 0.85757 0.84647 0.88667 0.87122 0.92341 0.90199 0.91454 0.89958 0.95337 0.91204 0.98398 0.95688 0.79209 0.94025 0.94467 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 10.82 113.37 1.23 2.15 16 2 O -0.40 -11.30 9.58 -135.19 -1.30 -12.60 16 3 C 0.09 2.07 2.27 30.59 0.07 2.14 16 4 H 0.04 1.21 7.60 -2.38 -0.02 1.19 16 5 C -0.16 -2.34 9.53 71.98 0.69 -1.65 16 6 C -0.12 -2.53 4.39 29.85 0.13 -2.40 16 7 C 0.52 17.09 7.80 87.66 0.68 17.77 16 8 O -0.59 -26.56 15.69 10.76 0.17 -26.39 16 9 N -0.63 -18.48 3.32 -807.18 -2.68 -21.16 16 10 C 0.11 1.88 6.48 86.48 0.56 2.44 16 11 C -0.09 -1.87 3.30 -9.89 -0.03 -1.91 16 12 H 0.08 1.72 7.71 -2.39 -0.02 1.70 16 13 C -0.14 -1.99 7.93 71.98 0.57 -1.42 16 14 C -0.07 -2.15 0.73 -51.26 -0.04 -2.19 16 15 C -0.13 -3.73 7.10 71.98 0.51 -3.22 16 16 C 0.17 7.18 4.95 86.38 0.43 7.60 16 17 N -0.74 -39.90 4.79 -343.45 -1.64 -41.55 16 18 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 19 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.07 -4.51 5.50 84.86 0.47 -4.05 16 21 N -0.97 -62.30 13.06 21.65 0.28 -62.02 16 22 Si 0.97 48.55 29.55 68.60 2.03 50.57 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 25 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 26 C 0.12 4.12 5.92 86.54 0.51 4.63 16 27 H 0.06 1.12 7.87 -2.39 -0.02 1.10 16 28 H 0.02 0.63 8.09 -2.38 -0.02 0.61 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.87 7.87 -2.39 -0.02 0.85 16 32 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.14 1.87 7.96 -2.38 -0.02 1.86 16 35 H 0.10 1.32 7.85 -2.39 -0.02 1.30 16 36 H 0.11 1.24 7.32 -2.39 -0.02 1.22 16 37 H 0.06 0.95 6.89 -2.38 -0.02 0.94 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.92 6.69 -2.38 -0.02 0.91 16 40 H 0.08 1.89 6.72 -2.39 -0.02 1.88 16 41 H 0.03 1.06 6.75 -2.38 -0.02 1.04 16 42 H 0.07 1.91 6.84 -2.39 -0.02 1.89 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.37 21.45 5.99 -92.71 -0.56 20.89 16 46 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 47 H 0.04 1.78 6.94 -2.39 -0.02 1.76 16 48 H 0.07 2.44 7.83 -2.39 -0.02 2.42 16 Total: -1.00 -82.39 374.05 3.84 -78.55 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.37 Total: 28.55 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 6.61 Total: 6.04 kcal Atomic # 7 Polarization: -120.69 SS G_CDS: -4.04 Total: -124.73 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -1.13 Total: -38.98 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.57 kcal Total: -82.39 3.84 -78.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180823744.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.821 kcal (2) G-P(sol) polarization free energy of solvation -82.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds