Wall clock time and date at job start Fri Apr 10 2020 20:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00212 * 2 1 4 4 H 1.09000 * 109.46912 * 29.99755 * 3 2 1 5 5 C 1.52995 * 109.47300 * 270.00014 * 3 2 1 6 6 C 1.53004 * 109.47180 * 149.99780 * 3 2 1 7 7 C 1.50700 * 109.47208 * 294.99996 * 6 3 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 3 10 10 C 1.48140 * 127.84088 * 359.39982 * 9 7 6 11 11 C 1.54795 * 104.41822 * 140.36938 * 10 9 7 12 12 H 1.08995 * 110.20087 * 142.93973 * 11 10 9 13 13 C 1.53002 * 110.61668 * 265.18308 * 11 10 9 14 14 C 1.54285 * 104.91566 * 24.16956 * 11 10 9 15 15 C 1.53004 * 110.34360 * 240.93469 * 14 11 10 16 16 C 1.53001 * 110.34242 * 118.67762 * 14 11 10 17 17 N 1.46507 * 109.47151 * 183.00711 * 16 14 11 18 18 C 1.36930 * 119.99813 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00492 * 359.97438 * 18 17 16 20 20 C 1.38822 * 119.99922 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99437 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47345 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46978 * 119.99854 * 22 20 18 25 25 H 1.48495 * 109.47420 * 240.00107 * 22 20 18 26 26 C 1.48150 * 127.83344 * 179.72939 * 9 7 6 27 27 H 1.08999 * 109.47230 * 299.99577 * 1 2 3 28 28 H 1.08992 * 109.46920 * 60.00209 * 1 2 3 29 29 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47370 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.46927 * 299.99733 * 5 3 2 32 32 H 1.09004 * 109.46944 * 59.99491 * 5 3 2 33 33 H 1.09009 * 109.46730 * 174.99902 * 6 3 2 34 34 H 1.08998 * 109.46846 * 55.00447 * 6 3 2 35 35 H 1.09001 * 110.41247 * 259.20339 * 10 9 7 36 36 H 1.09004 * 110.40474 * 21.63490 * 10 9 7 37 37 H 1.08999 * 109.46698 * 175.64349 * 13 11 10 38 38 H 1.08995 * 109.46911 * 295.65009 * 13 11 10 39 39 H 1.09000 * 109.46971 * 55.64468 * 13 11 10 40 40 H 1.08997 * 109.47425 * 176.99404 * 15 14 11 41 41 H 1.08997 * 109.47053 * 296.99294 * 15 14 11 42 42 H 1.08996 * 109.46785 * 56.99144 * 15 14 11 43 43 H 1.08998 * 109.47369 * 303.00278 * 16 14 11 44 44 H 1.09004 * 109.47010 * 63.00868 * 16 14 11 45 45 H 0.96997 * 119.99725 * 359.97438 * 17 16 14 46 46 H 0.97009 * 119.99645 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.40466 * 338.36457 * 26 9 7 48 48 H 1.08997 * 110.40688 * 100.67786 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4424 6 6 3.3589 1.2632 0.7213 7 6 3.1416 0.9235 2.1734 8 8 2.0185 0.7344 2.5904 9 7 4.1947 0.8360 3.0099 10 6 5.6285 1.0257 2.6889 11 6 6.1967 1.7976 3.9043 12 1 7.2063 1.4542 4.1297 13 6 6.1960 3.3036 3.6343 14 6 5.2431 1.4611 5.0696 15 6 4.5829 2.7349 5.6014 16 6 6.0029 0.7472 6.1894 17 7 5.0673 0.3731 7.2530 18 6 5.5223 -0.2820 8.3659 19 1 6.5708 -0.5234 8.4596 20 6 4.6357 -0.6369 9.3735 21 7 3.3579 -0.3431 9.2591 22 14 5.2563 -1.5313 10.8914 23 1 6.7220 -1.7415 10.7775 24 1 4.9660 -0.7172 12.0989 25 1 4.5747 -2.8456 11.0049 26 6 4.1817 0.5218 4.4576 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.6606 2.7672 -1.4425 31 1 2.8830 1.0774 -1.9562 32 1 1.2568 1.8013 -1.9563 33 1 3.8427 2.2370 0.6443 34 1 3.9931 0.5051 0.2618 35 1 6.1250 0.0612 2.5822 36 1 5.7394 1.6141 1.7780 37 1 6.5261 3.8330 4.5281 38 1 6.8733 3.5252 2.8096 39 1 5.1879 3.6254 3.3729 40 1 3.8734 2.4755 6.3871 41 1 5.3471 3.3982 6.0065 42 1 4.0581 3.2382 4.7895 43 1 6.4781 -0.1496 5.7917 44 1 6.7650 1.4135 6.5936 45 1 4.1255 0.5896 7.1687 46 1 2.7383 -0.5914 9.9630 47 1 3.1998 0.7296 4.8827 48 1 4.4536 -0.5207 4.6227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180823745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:30 Heat of formation + Delta-G solvation = -74.666242 kcal Electronic energy + Delta-G solvation = -25613.776602 eV Core-core repulsion = 22090.022523 eV Total energy + Delta-G solvation = -3523.754078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.30418 -38.81494 -37.47589 -34.74680 -33.19118 -32.80105 -31.46546 -29.68069 -28.60978 -27.09545 -26.57883 -25.46373 -25.17200 -23.21384 -21.65036 -21.10324 -19.19334 -18.43975 -17.30393 -16.99184 -16.63547 -15.85434 -15.72760 -15.14238 -14.59937 -14.50340 -14.26965 -14.05686 -13.92324 -13.37867 -13.18464 -13.04015 -12.88132 -12.78474 -12.57437 -12.30052 -12.24514 -11.98603 -11.81530 -11.55562 -11.45116 -11.25407 -11.20204 -10.98004 -10.86520 -10.80511 -10.39307 -10.28883 -10.14858 -9.85085 -9.71096 -9.61837 -9.53581 -8.85542 -8.47003 -6.88720 -5.73060 -3.01775 2.83032 3.09966 3.45566 3.50819 3.53363 3.70266 4.42331 4.59686 4.60924 4.64006 4.83670 4.92106 4.97528 5.12029 5.23511 5.26978 5.34190 5.36466 5.44813 5.47370 5.47478 5.49696 5.53017 5.59873 5.66847 5.71740 5.73836 5.85725 5.90995 5.93404 6.02178 6.12370 6.15597 6.22030 6.28174 6.31755 6.47646 6.63984 6.71679 6.80371 6.89633 7.15180 7.73144 7.77327 8.36819 8.45398 9.56795 10.14597 10.49053 11.49668 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.003517 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.144515 B = 7958.596919 C = 8961.271342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.174 4.174 6 C -0.135 4.135 7 C 0.533 3.467 8 O -0.534 6.534 9 N -0.623 5.623 10 C 0.105 3.895 11 C -0.098 4.098 12 H 0.087 0.913 13 C -0.141 4.141 14 C -0.075 4.075 15 C -0.130 4.130 16 C 0.168 3.832 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.120 3.880 27 H 0.047 0.953 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.083 0.917 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 7.414 -22.012 23.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.232 4.232 6 C -0.175 4.175 7 C 0.322 3.678 8 O -0.410 6.410 9 N -0.358 5.358 10 C -0.019 4.019 11 C -0.118 4.118 12 H 0.105 0.895 13 C -0.198 4.198 14 C -0.076 4.076 15 C -0.188 4.188 16 C 0.040 3.960 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.001 4.001 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.860 7.068 -21.746 22.942 hybrid contribution -0.071 -0.292 0.895 0.944 sum 1.789 6.777 -20.852 21.998 Atomic orbital electron populations 1.22693 0.81026 1.02481 0.99662 1.87888 1.19814 1.26895 1.94926 1.21784 0.93667 0.85960 0.94478 0.91397 1.22297 1.02535 1.01557 0.96771 1.21814 0.98900 1.04067 0.92723 1.20063 0.83530 0.77011 0.87200 1.90711 1.22653 1.50052 1.77612 1.49048 1.06246 1.69841 1.10635 1.22556 0.81227 0.99959 0.98108 1.22205 0.99606 0.95812 0.94154 0.89488 1.21897 1.01491 0.95046 1.01384 1.21697 0.94991 0.96136 0.94784 1.21849 1.00528 0.95966 1.00422 1.20713 0.92276 0.95266 0.87717 1.42399 1.07077 1.69595 1.18473 1.19250 0.93398 1.28858 0.95536 0.91199 1.24739 0.95482 1.01869 0.98868 1.69673 1.01667 1.52278 1.34355 0.86134 0.77707 0.79171 0.83273 1.20613 1.21945 1.21914 1.22433 1.00420 0.98924 0.78366 0.93449 0.94787 0.90022 0.91544 0.91696 0.92219 0.87989 0.88299 0.91005 0.90652 0.91869 0.93210 0.92495 0.91650 0.92544 0.93400 0.96245 0.96030 0.78069 0.93563 0.89832 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.82 101.05 1.09 1.51 16 2 O -0.38 -5.03 9.58 -49.64 -0.48 -5.51 16 3 C 0.10 1.08 2.27 -26.73 -0.06 1.02 16 4 H 0.07 0.79 7.60 -51.93 -0.39 0.40 16 5 C -0.17 -1.34 9.53 37.16 0.35 -0.99 16 6 C -0.14 -1.41 4.38 -27.88 -0.12 -1.54 16 7 C 0.53 8.05 7.79 -10.98 -0.09 7.97 16 8 O -0.53 -10.29 15.69 -8.85 -0.14 -10.43 16 9 N -0.62 -8.96 3.31 -169.05 -0.56 -9.52 16 10 C 0.10 1.13 6.50 -2.19 -0.01 1.12 16 11 C -0.10 -1.15 3.30 -89.00 -0.29 -1.45 16 12 H 0.09 0.96 7.71 -51.93 -0.40 0.56 16 13 C -0.14 -1.43 7.95 37.16 0.30 -1.13 16 14 C -0.07 -1.18 0.73 -153.10 -0.11 -1.29 16 15 C -0.13 -2.09 7.08 37.16 0.26 -1.83 16 16 C 0.17 3.27 4.85 -4.04 -0.02 3.25 16 17 N -0.73 -18.23 5.12 -59.90 -0.31 -18.54 16 18 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 C 0.12 2.09 5.54 -2.41 -0.01 2.07 16 27 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 28 H 0.03 0.30 7.87 -51.93 -0.41 -0.11 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.10 0.79 7.96 -51.92 -0.41 0.37 16 34 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.61 7.04 -51.93 -0.37 0.24 16 37 H 0.06 0.67 6.89 -51.93 -0.36 0.31 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.61 6.72 -51.93 -0.35 0.26 16 40 H 0.06 1.25 7.01 -51.93 -0.36 0.88 16 41 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 42 H 0.05 0.70 6.62 -51.93 -0.34 0.36 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.38 10.21 6.28 -40.82 -0.26 9.95 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.08 1.68 7.60 -51.93 -0.39 1.28 16 48 H 0.08 1.43 7.87 -51.93 -0.41 1.02 16 LS Contribution 375.23 15.07 5.65 5.65 Total: -1.00 -33.59 375.23 -7.66 -41.25 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.57 Total: 5.85 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 1.04 Total: 1.41 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.14 Total: -55.81 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.61 Total: -15.94 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.59 -7.66 -41.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180823745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.413 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds