Wall clock time and date at job start Fri Apr 10 2020 20:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00212 * 2 1 4 4 H 1.09000 * 109.46912 * 29.99755 * 3 2 1 5 5 C 1.52995 * 109.47300 * 270.00014 * 3 2 1 6 6 C 1.53004 * 109.47180 * 149.99780 * 3 2 1 7 7 C 1.50700 * 109.47208 * 294.99996 * 6 3 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 3 10 10 C 1.48140 * 127.84088 * 359.39982 * 9 7 6 11 11 C 1.54795 * 104.41822 * 140.36938 * 10 9 7 12 12 H 1.08995 * 110.20087 * 142.93973 * 11 10 9 13 13 C 1.53002 * 110.61668 * 265.18308 * 11 10 9 14 14 C 1.54285 * 104.91566 * 24.16956 * 11 10 9 15 15 C 1.53004 * 110.34360 * 240.93469 * 14 11 10 16 16 C 1.53001 * 110.34242 * 118.67762 * 14 11 10 17 17 N 1.46507 * 109.47151 * 183.00711 * 16 14 11 18 18 C 1.36930 * 119.99813 * 179.97438 * 17 16 14 19 19 H 1.07999 * 120.00492 * 359.97438 * 18 17 16 20 20 C 1.38822 * 119.99922 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99437 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47345 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46978 * 119.99854 * 22 20 18 25 25 H 1.48495 * 109.47420 * 240.00107 * 22 20 18 26 26 C 1.48150 * 127.83344 * 179.72939 * 9 7 6 27 27 H 1.08999 * 109.47230 * 299.99577 * 1 2 3 28 28 H 1.08992 * 109.46920 * 60.00209 * 1 2 3 29 29 H 1.09002 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47370 * 179.97438 * 5 3 2 31 31 H 1.09000 * 109.46927 * 299.99733 * 5 3 2 32 32 H 1.09004 * 109.46944 * 59.99491 * 5 3 2 33 33 H 1.09009 * 109.46730 * 174.99902 * 6 3 2 34 34 H 1.08998 * 109.46846 * 55.00447 * 6 3 2 35 35 H 1.09001 * 110.41247 * 259.20339 * 10 9 7 36 36 H 1.09004 * 110.40474 * 21.63490 * 10 9 7 37 37 H 1.08999 * 109.46698 * 175.64349 * 13 11 10 38 38 H 1.08995 * 109.46911 * 295.65009 * 13 11 10 39 39 H 1.09000 * 109.46971 * 55.64468 * 13 11 10 40 40 H 1.08997 * 109.47425 * 176.99404 * 15 14 11 41 41 H 1.08997 * 109.47053 * 296.99294 * 15 14 11 42 42 H 1.08996 * 109.46785 * 56.99144 * 15 14 11 43 43 H 1.08998 * 109.47369 * 303.00278 * 16 14 11 44 44 H 1.09004 * 109.47010 * 63.00868 * 16 14 11 45 45 H 0.96997 * 119.99725 * 359.97438 * 17 16 14 46 46 H 0.97009 * 119.99645 * 179.97438 * 21 20 18 47 47 H 1.08997 * 110.40466 * 338.36457 * 26 9 7 48 48 H 1.08997 * 110.40688 * 100.67786 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2177 1.7713 -1.4424 6 6 3.3589 1.2632 0.7213 7 6 3.1416 0.9235 2.1734 8 8 2.0185 0.7344 2.5904 9 7 4.1947 0.8360 3.0099 10 6 5.6285 1.0257 2.6889 11 6 6.1967 1.7976 3.9043 12 1 7.2063 1.4542 4.1297 13 6 6.1960 3.3036 3.6343 14 6 5.2431 1.4611 5.0696 15 6 4.5829 2.7349 5.6014 16 6 6.0029 0.7472 6.1894 17 7 5.0673 0.3731 7.2530 18 6 5.5223 -0.2820 8.3659 19 1 6.5708 -0.5234 8.4596 20 6 4.6357 -0.6369 9.3735 21 7 3.3579 -0.3431 9.2591 22 14 5.2563 -1.5313 10.8914 23 1 6.7220 -1.7415 10.7775 24 1 4.9660 -0.7172 12.0989 25 1 4.5747 -2.8456 11.0049 26 6 4.1817 0.5218 4.4576 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 2.6606 2.7672 -1.4425 31 1 2.8830 1.0774 -1.9562 32 1 1.2568 1.8013 -1.9563 33 1 3.8427 2.2370 0.6443 34 1 3.9931 0.5051 0.2618 35 1 6.1250 0.0612 2.5822 36 1 5.7394 1.6141 1.7780 37 1 6.5261 3.8330 4.5281 38 1 6.8733 3.5252 2.8096 39 1 5.1879 3.6254 3.3729 40 1 3.8734 2.4755 6.3871 41 1 5.3471 3.3982 6.0065 42 1 4.0581 3.2382 4.7895 43 1 6.4781 -0.1496 5.7917 44 1 6.7650 1.4135 6.5936 45 1 4.1255 0.5896 7.1687 46 1 2.7383 -0.5914 9.9630 47 1 3.1998 0.7296 4.8827 48 1 4.4536 -0.5207 4.6227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180823745.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:29 Heat of formation + Delta-G solvation = -97.037659 kcal Electronic energy + Delta-G solvation = -25614.746699 eV Core-core repulsion = 22090.022523 eV Total energy + Delta-G solvation = -3524.724176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47321 -39.88857 -38.55518 -36.46925 -34.59337 -33.72192 -33.03673 -31.24371 -29.54748 -28.26631 -27.54967 -26.69528 -26.55625 -24.97750 -22.65649 -22.23313 -20.33024 -19.82089 -19.01116 -17.96725 -17.84601 -17.11671 -16.77815 -16.46540 -16.04232 -15.69988 -15.55718 -15.33815 -15.20755 -14.76373 -14.71773 -14.27292 -13.95561 -13.73771 -13.48730 -13.42882 -13.18376 -13.05765 -12.92722 -12.86918 -12.81096 -12.59559 -12.43309 -12.39162 -12.29999 -12.03854 -11.95787 -11.66415 -11.47327 -11.35878 -11.18848 -10.95729 -10.81724 -10.51937 -9.68117 -8.98146 -7.94222 -5.22779 1.46139 1.47347 1.57356 1.69291 1.98732 2.55946 2.88756 3.37642 3.41012 3.59886 3.74719 3.83134 3.84931 4.19343 4.21310 4.29100 4.30079 4.34895 4.38748 4.45444 4.53051 4.58300 4.60607 4.68982 4.69556 4.76577 4.81151 4.82030 4.85780 4.90885 4.94072 5.03226 5.04386 5.08789 5.12575 5.15602 5.28712 5.33952 5.40103 5.47084 5.51941 5.63127 6.27434 6.30891 6.66389 7.21629 7.33692 8.11203 8.32905 9.29726 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.003517 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.144515 B = 7958.596919 C = 8961.271342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.404 6.404 3 C 0.091 3.909 4 H 0.051 0.949 5 C -0.164 4.164 6 C -0.124 4.124 7 C 0.522 3.478 8 O -0.589 6.589 9 N -0.621 5.621 10 C 0.104 3.896 11 C -0.090 4.090 12 H 0.102 0.898 13 C -0.137 4.137 14 C -0.067 4.067 15 C -0.121 4.121 16 C 0.167 3.833 17 N -0.744 5.744 18 C -0.239 4.239 19 H 0.079 0.921 20 C -0.080 4.080 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.262 1.262 24 H -0.294 1.294 25 H -0.297 1.297 26 C 0.125 3.875 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.022 0.978 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.372 0.628 46 H 0.249 0.751 47 H 0.040 0.960 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 8.525 -24.703 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.324 6.324 3 C 0.033 3.967 4 H 0.069 0.931 5 C -0.221 4.221 6 C -0.163 4.163 7 C 0.313 3.687 8 O -0.469 6.469 9 N -0.355 5.355 10 C -0.018 4.018 11 C -0.110 4.110 12 H 0.121 0.879 13 C -0.194 4.194 14 C -0.068 4.068 15 C -0.178 4.178 16 C 0.040 3.960 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.097 0.903 20 C -0.272 4.272 21 N -0.624 5.624 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.224 1.224 26 C 0.001 3.999 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.204 0.796 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.902 8.196 -24.481 26.278 hybrid contribution -0.976 -0.633 1.702 2.062 sum 3.926 7.562 -22.779 24.321 Atomic orbital electron populations 1.22735 0.80457 1.02895 0.99824 1.87832 1.20680 1.28703 1.95178 1.22017 0.93443 0.84715 0.96568 0.93101 1.22222 1.03054 1.02779 0.94078 1.21920 0.99331 1.06572 0.88524 1.21103 0.82722 0.75828 0.89044 1.90691 1.24975 1.52407 1.78867 1.49146 1.08157 1.69199 1.08970 1.22851 0.78402 1.01214 0.99295 1.22227 0.98972 0.97571 0.92213 0.87936 1.21874 1.02004 0.93095 1.02467 1.21581 0.95167 0.94911 0.95160 1.21757 1.00007 0.96453 0.99606 1.20908 0.91836 0.95780 0.87467 1.42645 1.07389 1.69405 1.19283 1.19700 0.93718 1.27617 0.96094 0.90301 1.25594 0.95706 1.03659 1.02217 1.69854 1.02983 1.54291 1.35239 0.85060 0.77990 0.77342 0.79304 1.18654 1.22181 1.22407 1.22095 0.98658 0.98078 0.81023 0.95560 0.92268 0.89603 0.89242 0.91039 0.92083 0.84112 0.86371 0.89981 0.86360 0.92433 0.89840 0.93120 0.95845 0.91285 0.92058 0.95769 0.95230 0.79561 0.94218 0.94119 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.82 113.37 1.23 2.07 16 2 O -0.40 -10.68 9.58 -135.21 -1.30 -11.98 16 3 C 0.09 1.83 2.27 30.59 0.07 1.90 16 4 H 0.05 1.18 7.60 -2.39 -0.02 1.16 16 5 C -0.16 -1.99 9.53 71.98 0.69 -1.30 16 6 C -0.12 -2.23 4.38 29.85 0.13 -2.10 16 7 C 0.52 15.52 7.79 87.66 0.68 16.20 16 8 O -0.59 -23.89 15.69 10.73 0.17 -23.72 16 9 N -0.62 -17.31 3.31 -807.15 -2.67 -19.99 16 10 C 0.10 1.86 6.50 86.68 0.56 2.42 16 11 C -0.09 -1.82 3.30 -9.74 -0.03 -1.86 16 12 H 0.10 1.83 7.71 -2.39 -0.02 1.81 16 13 C -0.14 -2.20 7.95 71.98 0.57 -1.62 16 14 C -0.07 -2.09 0.73 -51.27 -0.04 -2.13 16 15 C -0.12 -3.94 7.08 71.98 0.51 -3.43 16 16 C 0.17 6.46 4.85 86.38 0.42 6.88 16 17 N -0.74 -38.36 5.12 -343.43 -1.76 -40.12 16 18 C -0.24 -13.54 9.99 84.04 0.84 -12.70 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.08 -4.71 5.50 84.87 0.47 -4.25 16 21 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 22 Si 0.97 47.28 29.55 68.60 2.03 49.31 16 23 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 26 C 0.13 4.52 5.54 86.53 0.48 5.00 16 27 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 28 H 0.06 0.99 7.87 -2.39 -0.02 0.97 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.73 7.87 -2.38 -0.02 0.71 16 33 H 0.14 1.43 7.96 -2.38 -0.02 1.41 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 1.17 7.04 -2.38 -0.02 1.16 16 37 H 0.06 1.01 6.89 -2.39 -0.02 0.99 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.89 6.72 -2.39 -0.02 0.87 16 40 H 0.02 0.93 7.01 -2.39 -0.02 0.92 16 41 H 0.07 2.04 6.98 -2.39 -0.02 2.02 16 42 H 0.06 1.80 6.62 -2.39 -0.02 1.79 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.37 20.97 6.28 -92.71 -0.58 20.39 16 46 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 47 H 0.04 1.79 7.60 -2.39 -0.02 1.77 16 48 H 0.05 2.11 7.87 -2.39 -0.02 2.09 16 Total: -1.00 -78.57 375.23 3.67 -74.90 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.34 Total: 28.17 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.58 Total: 5.07 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -4.15 Total: -121.75 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -1.13 Total: -35.70 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -78.57 3.67 -74.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180823745.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.141 kcal (2) G-P(sol) polarization free energy of solvation -78.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds