Wall clock time and date at job start Fri Apr 10 2020 20:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46851 * 2 1 4 4 O 1.42901 * 109.46807 * 180.02562 * 3 2 1 5 5 C 1.42899 * 113.99607 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46876 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 H 1.09007 * 109.47463 * 325.00619 * 9 8 6 11 11 C 1.53000 * 109.47070 * 85.00207 * 9 8 6 12 12 C 1.53000 * 109.47430 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46730 * 300.00239 * 12 11 9 14 14 C 1.52998 * 109.47159 * 60.00041 * 13 12 11 15 15 C 1.52995 * 109.47455 * 205.00257 * 9 8 6 16 16 H 1.08999 * 109.47294 * 299.99971 * 15 9 8 17 17 C 1.52998 * 109.47337 * 60.00113 * 15 9 8 18 18 N 1.46494 * 109.47747 * 184.99962 * 17 15 9 19 19 C 1.36937 * 120.00310 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00148 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99678 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00526 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99483 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47247 * 60.00564 * 23 21 19 25 25 H 1.48504 * 109.47106 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47500 * 299.99765 * 23 21 19 27 27 H 1.09003 * 109.46844 * 299.99813 * 1 2 3 28 28 H 1.08992 * 109.47104 * 59.99858 * 1 2 3 29 29 H 1.08998 * 109.46894 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46715 * 240.00628 * 2 1 3 31 31 H 1.08993 * 109.47591 * 119.99939 * 2 1 3 32 32 H 1.09003 * 109.47244 * 60.00432 * 3 2 1 33 33 H 1.09001 * 109.46822 * 300.00035 * 3 2 1 34 34 H 1.09004 * 109.47206 * 60.00168 * 5 4 3 35 35 H 1.08994 * 109.47548 * 299.99825 * 5 4 3 36 36 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 37 37 H 1.09005 * 109.47473 * 300.00173 * 11 9 8 38 38 H 1.08998 * 109.46925 * 59.99877 * 11 9 8 39 39 H 1.08999 * 109.46883 * 60.00052 * 12 11 9 40 40 H 1.09002 * 109.47256 * 180.02562 * 12 11 9 41 41 H 1.08998 * 109.46633 * 180.02562 * 13 12 11 42 42 H 1.09004 * 109.46965 * 299.99241 * 13 12 11 43 43 H 1.08998 * 109.47289 * 60.00143 * 14 13 12 44 44 H 1.09008 * 109.46553 * 179.97438 * 14 13 12 45 45 H 1.09004 * 109.46868 * 305.00640 * 17 15 9 46 46 H 1.09010 * 109.47148 * 64.99671 * 17 15 9 47 47 H 0.97001 * 119.99485 * 0.02562 * 18 17 15 48 48 H 0.96996 * 120.00548 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6291 -0.0012 7 8 6.0741 1.5342 -0.0012 8 7 6.3164 3.7394 -0.0074 9 6 7.7768 3.6238 -0.0134 10 1 8.0752 2.7574 0.5769 11 6 8.2690 3.4546 -1.4522 12 6 9.7942 3.3332 -1.4585 13 6 10.4089 4.5975 -0.8545 14 6 9.9167 4.7666 0.5843 15 6 8.3910 4.8883 0.5903 16 1 8.0928 5.7547 0.0000 17 6 7.8989 5.0576 2.0291 18 7 8.3905 6.3283 2.5672 19 6 8.0754 6.6974 3.8477 20 1 7.4648 6.0515 4.4610 21 6 8.5418 7.9013 4.3576 22 7 9.2872 8.6878 3.6107 23 14 8.1113 8.4050 6.1041 24 1 8.6292 7.3883 7.0545 25 1 8.7260 9.7229 6.4050 26 1 6.6360 8.5049 6.2412 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.7289 3.2892 0.8888 35 1 3.7282 3.2887 -0.8912 36 1 5.8993 4.6152 -0.0077 37 1 7.8314 2.5537 -1.8824 38 1 7.9706 4.3210 -2.0425 39 1 10.0921 2.4666 -0.8683 40 1 10.1449 3.2131 -2.4836 41 1 11.4954 4.5112 -0.8594 42 1 10.1109 5.4641 -1.4448 43 1 10.2147 3.9001 1.1745 44 1 10.3550 5.6671 1.0146 45 1 6.8090 5.0544 2.0429 46 1 8.2723 4.2356 2.6399 47 1 8.9393 6.9083 2.0164 48 1 9.6128 9.5292 3.9669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340892.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:13 Heat of formation + Delta-G solvation = -102.628599 kcal Electronic energy + Delta-G solvation = -24652.170890 eV Core-core repulsion = 21127.204273 eV Total energy + Delta-G solvation = -3524.966617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12499 -38.59070 -37.52914 -34.62097 -34.08453 -33.92239 -31.89449 -30.04846 -29.55737 -27.89963 -25.82309 -25.10396 -23.04300 -22.20133 -21.82470 -20.63669 -20.38529 -19.63796 -17.43436 -17.16883 -16.69735 -16.67162 -15.76663 -15.24517 -14.90946 -14.77617 -14.33362 -14.15042 -13.91681 -13.74411 -13.48217 -13.26017 -13.02978 -12.70471 -12.52391 -12.37232 -12.26803 -12.21527 -11.81557 -11.52145 -11.20586 -11.17457 -11.07201 -10.88545 -10.87637 -10.70708 -10.36736 -10.24796 -10.09275 -9.97087 -9.90081 -9.67168 -9.58361 -8.92014 -8.82045 -6.92284 -5.77510 -3.05755 2.67003 2.77200 3.43239 3.47867 3.48716 3.82731 4.56088 4.64116 4.65347 4.77667 4.85057 4.91724 4.97738 5.02678 5.04902 5.09258 5.17402 5.19686 5.27093 5.37842 5.41809 5.57245 5.60356 5.65113 5.67579 5.69005 5.76126 5.82767 5.91008 5.91396 6.12321 6.15782 6.22291 6.26553 6.30388 6.40632 6.56780 6.57600 6.69449 6.77963 6.86106 6.93093 7.58111 7.69139 8.29481 8.41721 9.52899 10.10794 10.45739 11.45296 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.003510 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.507135 B = 7975.363306 C =10251.244246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.364 6.364 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.524 6.524 8 N -0.719 5.719 9 C 0.156 3.844 10 H 0.088 0.912 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.107 4.107 15 C -0.099 4.099 16 H 0.075 0.925 17 C 0.158 3.842 18 N -0.731 5.731 19 C -0.239 4.239 20 H 0.068 0.932 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 -12.027 -12.716 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.282 6.282 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.399 6.399 8 N -0.372 5.372 9 C 0.051 3.949 10 H 0.106 0.894 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.145 4.145 15 C -0.119 4.119 16 H 0.093 0.907 17 C 0.031 3.969 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.209 4.209 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.504 -13.003 -12.537 20.895 hybrid contribution -0.465 1.329 0.854 1.647 sum -10.969 -11.674 -11.684 19.827 Atomic orbital electron populations 1.21698 0.94726 1.02254 1.02006 1.21447 0.95545 0.95488 1.03642 1.22634 0.80657 0.98202 1.00276 1.87998 1.19420 1.25382 1.95449 1.22215 0.91982 0.86807 1.02668 1.20167 0.88465 0.84767 0.76645 1.90714 1.74581 1.26496 1.48137 1.45986 1.07245 1.08622 1.75298 1.21007 0.77973 0.99560 0.96314 0.89417 1.21896 0.96120 1.01878 0.96583 1.21489 0.94620 0.98570 1.00615 1.21600 0.99866 0.97578 0.96845 1.21504 0.94071 1.03161 0.95784 1.21599 0.96115 0.96187 0.97960 0.90678 1.20665 0.96011 0.89855 0.90389 1.42356 1.62249 1.19035 1.13869 1.19176 1.26149 1.01788 0.89893 0.91372 1.24720 1.00555 0.97404 0.98265 1.69638 1.39691 1.12745 1.36208 0.86280 0.77782 0.77534 0.84657 1.21283 1.21699 1.21327 0.92474 0.92561 0.92003 0.91043 0.90932 0.93075 0.93252 0.90078 0.90408 0.76341 0.91814 0.91908 0.91876 0.92168 0.92091 0.92034 0.92021 0.90215 0.96412 0.96387 0.78217 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -1.02 6.30 -26.73 -0.17 -1.19 16 3 C 0.06 0.54 5.94 37.16 0.22 0.76 16 4 O -0.36 -4.69 9.88 -55.14 -0.54 -5.24 16 5 C 0.04 0.47 6.42 36.01 0.23 0.70 16 6 C 0.51 7.29 7.87 -10.98 -0.09 7.21 16 7 O -0.52 -9.64 16.16 -14.35 -0.23 -9.87 16 8 N -0.72 -9.17 4.31 -53.81 -0.23 -9.40 16 9 C 0.16 2.18 1.90 -67.93 -0.13 2.05 16 10 H 0.09 1.42 7.58 -51.93 -0.39 1.02 16 11 C -0.13 -1.56 5.49 -26.73 -0.15 -1.71 16 12 C -0.11 -1.33 5.92 -26.73 -0.16 -1.49 16 13 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 14 C -0.11 -1.63 5.08 -26.71 -0.14 -1.77 16 15 C -0.10 -1.54 1.80 -90.60 -0.16 -1.70 16 16 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 17 C 0.16 3.12 5.56 -4.05 -0.02 3.10 16 18 N -0.73 -18.01 5.33 -59.91 -0.32 -18.32 16 19 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -27.87 13.06 55.49 0.72 -27.15 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.40 4.34 8.39 -40.82 -0.34 4.00 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.41 7.19 -51.92 -0.37 1.03 16 45 H 0.02 0.35 7.30 -51.93 -0.38 -0.03 16 46 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 47 H 0.38 9.86 6.85 -40.82 -0.28 9.58 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -33.15 383.24 -9.37 -42.52 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.92 Total: 7.91 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.60 Total: -3.52 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.17 Total: -54.88 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.78 Total: -15.11 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.15 -9.37 -42.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340892.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.108 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds