Wall clock time and date at job start Fri Apr 10 2020 20:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53012 * 109.46612 * 2 1 4 4 O 1.42902 * 109.46695 * 180.02562 * 3 2 1 5 5 C 1.42901 * 113.99610 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47045 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.46499 * 119.99771 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47391 * 34.99730 * 9 8 6 11 11 C 1.53002 * 109.46799 * 274.99826 * 9 8 6 12 12 C 1.53006 * 109.46711 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47445 * 59.99695 * 12 11 9 14 14 C 1.53002 * 109.47092 * 300.00075 * 13 12 11 15 15 C 1.53000 * 109.46840 * 155.00060 * 9 8 6 16 16 H 1.08992 * 109.47399 * 59.99666 * 15 9 8 17 17 C 1.53002 * 109.47233 * 299.99500 * 15 9 8 18 18 N 1.46494 * 109.47345 * 175.00068 * 17 15 9 19 19 C 1.36940 * 119.99930 * 179.97438 * 18 17 15 20 20 H 1.07991 * 120.00059 * 0.02562 * 19 18 17 21 21 C 1.38818 * 119.99648 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99368 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00132 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47177 * 89.99831 * 23 21 19 25 25 H 1.48493 * 109.46926 * 210.00028 * 23 21 19 26 26 H 1.48500 * 109.47107 * 329.99936 * 23 21 19 27 27 H 1.09000 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47050 * 299.99324 * 1 2 3 29 29 H 1.08996 * 109.47427 * 60.00238 * 1 2 3 30 30 H 1.09003 * 109.47050 * 240.00676 * 2 1 3 31 31 H 1.08996 * 109.47427 * 119.99762 * 2 1 3 32 32 H 1.09003 * 109.46861 * 60.00560 * 3 2 1 33 33 H 1.08996 * 109.47031 * 300.00005 * 3 2 1 34 34 H 1.08999 * 109.47403 * 59.99724 * 5 4 3 35 35 H 1.08995 * 109.47218 * 299.99710 * 5 4 3 36 36 H 0.96998 * 119.99599 * 359.97438 * 8 6 5 37 37 H 1.09002 * 109.47075 * 299.99543 * 11 9 8 38 38 H 1.08996 * 109.47407 * 60.00500 * 11 9 8 39 39 H 1.09001 * 109.46726 * 179.97438 * 12 11 9 40 40 H 1.09002 * 109.46589 * 299.99365 * 12 11 9 41 41 H 1.09002 * 109.47045 * 59.99942 * 13 12 11 42 42 H 1.09000 * 109.47140 * 179.97438 * 13 12 11 43 43 H 1.09000 * 109.46497 * 180.02562 * 14 13 12 44 44 H 1.09002 * 109.47067 * 299.99853 * 14 13 12 45 45 H 1.09007 * 109.47055 * 295.00568 * 17 15 9 46 46 H 1.09008 * 109.46873 * 55.00209 * 17 15 9 47 47 H 0.97002 * 119.99750 * 0.02562 * 18 17 15 48 48 H 0.97008 * 119.99116 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 8 3.4689 1.4427 -0.0006 5 6 4.0501 2.7482 -0.0001 6 6 5.5524 2.6293 -0.0001 7 8 6.0740 1.5344 -0.0001 8 7 6.3162 3.7397 -0.0002 9 6 7.7767 3.6241 -0.0008 10 1 8.0722 2.7563 -0.5906 11 6 8.2757 3.4583 1.4360 12 6 9.8010 3.3381 1.4353 13 6 10.4119 4.6015 0.8259 14 6 9.9128 4.7673 -0.6109 15 6 8.3879 4.8873 -0.6104 16 1 8.0924 5.7550 -0.0208 17 6 7.8889 5.0532 -2.0473 18 7 8.3779 6.3227 -2.5906 19 6 8.0566 6.6888 -3.8704 20 1 7.4425 6.0418 -4.4791 21 6 8.5204 7.8916 -4.3854 22 7 8.2112 8.2436 -5.6154 23 14 9.5833 9.0104 -3.3328 24 1 11.0135 8.6612 -3.5274 25 1 9.3601 10.4234 -3.7310 26 1 9.2212 8.8358 -1.9033 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8901 33 1 1.6765 1.9564 -0.8900 34 1 3.7288 3.2886 0.8903 35 1 3.7281 3.2896 -0.8896 36 1 5.8990 4.6154 -0.0006 37 1 7.9802 4.3261 2.0257 38 1 7.8402 2.5584 1.8703 39 1 10.1566 3.2204 2.4590 40 1 10.0968 2.4705 0.8456 41 1 10.1160 5.4691 1.4157 42 1 11.4985 4.5161 0.8259 43 1 10.3484 5.6672 -1.0452 44 1 10.2087 3.8998 -1.2007 45 1 8.2595 4.2297 -2.6579 46 1 6.7989 5.0500 -2.0559 47 1 8.9298 6.9037 -2.0440 48 1 8.5350 9.0843 -5.9751 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:16 Heat of formation + Delta-G solvation = -98.396882 kcal Electronic energy + Delta-G solvation = -24723.396707 eV Core-core repulsion = 21198.613591 eV Total energy + Delta-G solvation = -3524.783116 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19764 -38.66677 -37.58005 -34.82496 -34.16104 -33.92562 -31.96554 -30.14332 -30.02547 -27.98060 -25.88483 -25.31232 -22.90532 -22.11704 -21.82323 -20.75480 -20.44227 -19.76873 -17.78645 -17.21769 -16.87263 -16.70295 -15.83976 -15.26899 -14.95779 -14.75544 -14.39769 -14.31095 -14.01783 -13.87284 -13.55012 -13.36465 -12.97221 -12.76034 -12.66250 -12.37769 -12.31949 -12.23901 -12.06273 -11.71039 -11.24168 -11.20626 -11.16059 -11.07118 -10.98990 -10.82369 -10.49503 -10.37532 -10.11822 -10.05502 -9.90956 -9.66980 -9.59306 -8.98256 -8.87532 -7.24529 -5.78585 -3.13995 2.62874 2.73483 3.34131 3.36939 3.42819 3.79617 4.56655 4.58307 4.65403 4.68543 4.76929 4.83517 4.92389 4.97203 5.02612 5.04062 5.11864 5.17018 5.19773 5.25647 5.41913 5.46777 5.52338 5.52981 5.55046 5.61734 5.67991 5.75563 5.82245 5.82970 5.91496 6.03878 6.07746 6.13987 6.18330 6.25428 6.43411 6.47200 6.50752 6.64692 6.77917 6.86260 7.52266 7.98135 8.24862 8.40526 9.19671 9.91852 10.11851 11.39979 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.003448 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.519854 B = 8118.435621 C = 9930.403697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.364 6.364 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.523 6.523 8 N -0.720 5.720 9 C 0.157 3.843 10 H 0.090 0.910 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.109 4.109 15 C -0.104 4.104 16 H 0.074 0.926 17 C 0.163 3.837 18 N -0.754 5.754 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.402 0.598 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.560 -11.320 17.392 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.283 6.283 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.398 6.398 8 N -0.373 5.373 9 C 0.052 3.948 10 H 0.108 0.892 11 C -0.165 4.165 12 C -0.153 4.153 13 C -0.160 4.160 14 C -0.147 4.147 15 C -0.123 4.123 16 H 0.093 0.907 17 C 0.035 3.965 18 N -0.400 5.400 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.237 0.763 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.189 -12.313 17.147 22.643 hybrid contribution 0.336 1.735 0.571 1.857 sum -7.853 -10.579 17.718 22.080 Atomic orbital electron populations 1.21699 0.94713 1.02264 1.02016 1.21449 0.95559 0.95471 1.03640 1.22639 0.80602 0.98227 1.00300 1.87997 1.19469 1.25332 1.95454 1.22211 0.91888 0.86868 1.02710 1.20175 0.88504 0.84717 0.76563 1.90716 1.74578 1.26477 1.48001 1.45972 1.07133 1.08686 1.75505 1.20971 0.78104 0.99359 0.96331 0.89204 1.21903 0.96046 1.01998 0.96571 1.21484 0.94654 0.98466 1.00694 1.21605 0.99958 0.97766 0.96633 1.21508 0.94108 1.03008 0.96083 1.21641 0.96096 0.96575 0.98037 0.90726 1.20647 0.96508 0.89140 0.90165 1.42718 1.62833 1.20157 1.14328 1.19057 1.26910 1.03048 0.88277 0.89310 1.24677 1.00547 0.97822 0.96163 1.69707 1.49937 1.23980 1.14631 0.86553 0.81083 0.80873 0.80043 1.21040 1.21760 1.20372 0.91999 0.92582 0.92434 0.90905 0.91067 0.93259 0.93021 0.90434 0.89973 0.76338 0.91928 0.91637 0.92070 0.91728 0.92099 0.91985 0.90945 0.91519 0.95458 0.95554 0.80648 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -1.02 6.30 -26.72 -0.17 -1.19 16 3 C 0.06 0.53 5.94 37.16 0.22 0.75 16 4 O -0.36 -4.63 9.88 -55.14 -0.54 -5.18 16 5 C 0.04 0.46 6.42 36.01 0.23 0.69 16 6 C 0.52 7.08 7.87 -10.98 -0.09 6.99 16 7 O -0.52 -9.39 16.16 -14.35 -0.23 -9.62 16 8 N -0.72 -8.73 4.31 -53.80 -0.23 -8.96 16 9 C 0.16 2.06 1.90 -67.93 -0.13 1.93 16 10 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 11 C -0.13 -1.46 5.50 -26.73 -0.15 -1.61 16 12 C -0.11 -1.23 5.92 -26.73 -0.16 -1.39 16 13 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 14 C -0.11 -1.52 5.07 -26.75 -0.14 -1.66 16 15 C -0.10 -1.50 1.80 -90.64 -0.16 -1.66 16 16 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 17 C 0.16 3.04 5.56 -4.04 -0.02 3.02 16 18 N -0.75 -17.41 5.13 -59.91 -0.31 -17.72 16 19 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 23 Si 0.88 21.80 27.74 -169.99 -4.71 17.09 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.06 8.39 -40.82 -0.34 3.71 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.13 7.18 -51.93 -0.37 0.76 16 44 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.03 0.49 7.30 -51.92 -0.38 0.11 16 47 H 0.36 8.07 4.71 -40.82 -0.19 7.88 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -34.26 380.10 -9.01 -43.27 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.88 Total: 7.07 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.60 Total: -3.16 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.24 Total: -55.19 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.78 Total: -14.80 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.26 -9.01 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.126 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds