Wall clock time and date at job start Fri Apr 10 2020 20:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.42907 * 113.99838 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46942 * 180.02562 * 5 4 3 7 7 O 1.21275 * 120.00364 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99669 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99791 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47369 * 324.99981 * 9 8 6 11 11 C 1.53001 * 109.46912 * 85.00210 * 9 8 6 12 12 C 1.53001 * 109.47336 * 59.99807 * 11 9 8 13 13 C 1.52997 * 109.46871 * 60.00054 * 12 11 9 14 14 C 1.52998 * 109.47195 * 299.99729 * 13 12 11 15 15 C 1.52998 * 109.47014 * 204.99810 * 9 8 6 16 16 H 1.09003 * 109.47022 * 180.02562 * 15 9 8 17 17 C 1.53001 * 109.46955 * 60.00426 * 15 9 8 18 18 N 1.46501 * 109.46843 * 174.99817 * 17 15 9 19 19 C 1.36938 * 119.99733 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00177 * 359.97438 * 19 18 17 21 21 C 1.38812 * 120.00051 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00202 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00085 * 0.02562 * 21 19 18 24 24 H 1.48507 * 109.46829 * 89.99783 * 23 21 19 25 25 H 1.48496 * 109.47530 * 209.99832 * 23 21 19 26 26 H 1.48503 * 109.46927 * 330.00275 * 23 21 19 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 31 31 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 33 33 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 34 34 H 1.09004 * 109.46885 * 300.00332 * 5 4 3 35 35 H 1.08996 * 109.46933 * 60.00042 * 5 4 3 36 36 H 0.97000 * 119.99804 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.47120 * 179.97438 * 11 9 8 38 38 H 1.09002 * 109.46996 * 299.99952 * 11 9 8 39 39 H 1.09003 * 109.47061 * 300.00091 * 12 11 9 40 40 H 1.08999 * 109.46720 * 180.02562 * 12 11 9 41 41 H 1.09000 * 109.46826 * 180.02562 * 13 12 11 42 42 H 1.09003 * 109.47248 * 60.00151 * 13 12 11 43 43 H 1.09003 * 109.47367 * 300.00349 * 14 13 12 44 44 H 1.09002 * 109.47095 * 180.02562 * 14 13 12 45 45 H 1.09003 * 109.47144 * 294.99648 * 17 15 9 46 46 H 1.08998 * 109.47470 * 54.99625 * 17 15 9 47 47 H 0.96995 * 120.00259 * 0.02562 * 18 17 15 48 48 H 0.96994 * 119.99893 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7479 -0.0012 6 6 5.5525 2.6288 -0.0025 7 8 6.0741 1.5340 -0.0023 8 7 6.3165 3.7392 -0.0027 9 6 7.7769 3.6235 -0.0033 10 1 8.0729 2.7556 0.5859 11 6 8.2747 3.4580 -1.4406 12 6 7.8593 4.6763 -2.2677 13 6 8.4713 5.9392 -1.6583 14 6 7.9734 6.1047 -0.2210 15 6 8.3888 4.8864 0.6061 16 1 9.4755 4.8005 0.6052 17 6 7.8910 5.0519 2.0433 18 7 8.5677 6.1923 2.6662 19 6 8.2806 6.5352 3.9605 20 1 7.5551 5.9653 4.5219 21 6 8.9213 7.6160 4.5506 22 7 8.6458 7.9454 5.7948 23 14 10.1746 8.6032 3.5788 24 1 9.4886 9.7140 2.8711 25 1 11.1923 9.1604 4.5057 26 1 10.8391 7.7199 2.5871 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.7282 3.2886 -0.8913 35 1 3.7290 3.2891 0.8887 36 1 5.8993 4.6149 -0.0025 37 1 9.3614 3.3724 -1.4412 38 1 7.8388 2.5583 -1.8748 39 1 6.7727 4.7624 -2.2672 40 1 8.2136 4.5581 -3.2917 41 1 8.1749 6.8072 -2.2472 42 1 9.5579 5.8531 -1.6588 43 1 6.8868 6.1908 -0.2205 44 1 8.4090 7.0047 0.2130 45 1 6.8151 5.2268 2.0374 46 1 8.1088 4.1465 2.6098 47 1 9.2184 6.7048 2.1616 48 1 9.0938 8.7004 6.2071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754340894.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:40:19 Heat of formation + Delta-G solvation = -95.343533 kcal Electronic energy + Delta-G solvation = -24939.993115 eV Core-core repulsion = 21415.342402 eV Total energy + Delta-G solvation = -3524.650713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37966 -38.70251 -37.53012 -34.85814 -33.93301 -33.68584 -31.98909 -30.34641 -30.05374 -28.11435 -25.89882 -25.32082 -22.86765 -22.19989 -21.87401 -21.13732 -20.60454 -19.04598 -17.81263 -17.30349 -16.80484 -16.72340 -15.64584 -15.38222 -15.03697 -14.82110 -14.60892 -14.29929 -14.02144 -13.73080 -13.58811 -13.45171 -12.92609 -12.80313 -12.46224 -12.38902 -12.28647 -12.22767 -12.10286 -11.79218 -11.61761 -11.21090 -11.17138 -11.11495 -11.00177 -10.82590 -10.49956 -10.28334 -10.05898 -9.93711 -9.91475 -9.72676 -9.58958 -8.98185 -8.87571 -7.24321 -5.78216 -3.13704 2.63989 2.75023 3.34812 3.37003 3.43248 3.80996 4.57045 4.59300 4.64783 4.70022 4.76748 4.79386 4.82579 4.93291 5.01974 5.02819 5.09308 5.16354 5.19087 5.21776 5.41364 5.48214 5.48930 5.53107 5.56016 5.64271 5.67546 5.71120 5.77803 5.82447 5.91065 5.96822 6.05683 6.08939 6.15077 6.24049 6.35346 6.45097 6.52394 6.68670 6.73818 6.85503 7.52972 7.98300 8.25960 8.40845 9.19983 9.92152 10.12055 11.40348 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.003371 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.498442 B = 8304.678606 C = 9674.880975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.364 6.364 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.523 6.523 8 N -0.716 5.716 9 C 0.158 3.842 10 H 0.090 0.910 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.122 4.122 14 C -0.112 4.112 15 C -0.106 4.106 16 H 0.085 0.915 17 C 0.164 3.836 18 N -0.755 5.755 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.401 0.599 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.361 0.639 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 -9.498 -18.504 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.282 6.282 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.398 6.398 8 N -0.370 5.370 9 C 0.053 3.947 10 H 0.108 0.892 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.159 4.159 14 C -0.150 4.150 15 C -0.125 4.125 16 H 0.104 0.896 17 C 0.037 3.963 18 N -0.400 5.400 19 C -0.373 4.373 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.583 5.583 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.236 0.764 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.194 0.806 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.806 -10.484 -18.261 23.668 hybrid contribution 0.547 1.595 -0.489 1.755 sum -10.260 -8.889 -18.750 23.148 Atomic orbital electron populations 1.21697 0.94717 1.02269 1.02006 1.21446 0.95553 0.95471 1.03652 1.22633 0.80623 0.98228 1.00274 1.88002 1.19445 1.25319 1.95444 1.22211 0.91984 0.86873 1.02623 1.20164 0.88472 0.84762 0.76630 1.90715 1.74560 1.26497 1.48042 1.45991 1.07066 1.08577 1.75361 1.20920 0.78616 0.98970 0.96161 0.89192 1.21916 1.01227 0.98322 0.95308 1.21484 1.00583 0.94717 0.98491 1.21594 1.00674 0.97363 0.96279 1.21556 1.00715 0.98489 0.94239 1.21688 1.01162 0.93559 0.96135 0.89628 1.20623 0.95406 0.90916 0.89370 1.42719 1.49694 1.34377 1.13251 1.19056 1.20007 1.10712 0.87516 0.89308 1.24676 0.99826 0.98689 0.96016 1.69702 1.46051 1.30285 1.12230 0.86554 0.82031 0.80502 0.79482 1.21095 1.21732 1.20330 0.91994 0.92450 0.92582 0.91061 0.90900 0.93282 0.93035 0.90506 0.90045 0.76356 0.91001 0.91564 0.92223 0.92391 0.92180 0.91939 0.92240 0.90976 0.95581 0.95535 0.80640 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.54 16 2 C -0.12 -1.01 6.30 -26.73 -0.17 -1.18 16 3 C 0.06 0.53 5.94 37.16 0.22 0.75 16 4 O -0.36 -4.59 9.88 -55.14 -0.54 -5.13 16 5 C 0.04 0.45 6.42 36.00 0.23 0.68 16 6 C 0.51 6.96 7.87 -10.99 -0.09 6.88 16 7 O -0.52 -9.32 16.16 -14.35 -0.23 -9.55 16 8 N -0.72 -8.48 3.62 -53.81 -0.19 -8.68 16 9 C 0.16 2.04 2.23 -67.93 -0.15 1.89 16 10 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 11 C -0.13 -1.46 5.60 -26.73 -0.15 -1.61 16 12 C -0.12 -1.14 5.77 -26.73 -0.15 -1.29 16 13 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 14 C -0.11 -1.43 4.90 -26.73 -0.13 -1.56 16 15 C -0.11 -1.51 2.02 -90.62 -0.18 -1.69 16 16 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 17 C 0.16 3.05 5.42 -4.04 -0.02 3.03 16 18 N -0.75 -17.44 5.13 -59.91 -0.31 -17.75 16 19 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 22 N -0.93 -29.34 13.97 55.49 0.78 -28.57 16 23 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H -0.28 -6.42 6.52 56.52 0.37 -6.05 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.40 4.04 6.67 -40.82 -0.27 3.77 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.70 6.51 -51.93 -0.34 0.36 16 44 H 0.07 1.06 7.18 -51.93 -0.37 0.69 16 45 H 0.03 0.48 7.61 -51.93 -0.40 0.09 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.36 8.08 4.71 -40.82 -0.19 7.89 16 48 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 376.00 15.07 5.67 5.67 Total: -1.00 -34.24 376.00 -8.90 -43.15 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.71 Total: 6.77 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.64 Total: -3.05 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.27 Total: -54.99 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.78 Total: -14.68 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.24 -8.90 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754340894.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.198 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds