Wall clock time and date at job start Fri Apr 10 2020 20:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 C 1.52995 * 109.47358 * 119.99908 * 2 1 3 5 5 C 1.52998 * 109.47367 * 174.09421 * 4 2 1 6 6 H 1.09002 * 109.46832 * 54.98168 * 5 4 2 7 7 C 1.52997 * 109.47421 * 294.98330 * 5 4 2 8 8 C 1.52998 * 109.47213 * 174.97920 * 5 4 2 9 9 C 1.50696 * 109.47129 * 185.00147 * 8 5 4 10 10 O 1.21285 * 120.00144 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99945 * 180.02562 * 9 8 5 12 12 C 1.46501 * 120.00079 * 180.27903 * 11 9 8 13 13 H 1.09004 * 110.64168 * 36.40578 * 12 11 9 14 14 C 1.54329 * 110.71883 * 273.26903 * 12 11 9 15 15 N 1.47023 * 107.26772 * 219.44226 * 14 12 11 16 16 C 1.36941 * 125.64236 * 178.97738 * 15 14 12 17 17 H 1.07996 * 120.00087 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99682 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46768 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46738 * 119.99558 * 20 18 16 23 23 H 1.48493 * 109.47128 * 239.99737 * 20 18 16 24 24 C 1.47417 * 108.70686 * 358.94200 * 15 14 12 25 25 C 1.54906 * 104.83128 * 24.12483 * 24 15 14 26 26 H 1.09006 * 111.00532 * 204.91726 * 25 24 15 27 27 O 1.42905 * 111.00352 * 81.06892 * 25 24 15 28 28 H 1.08998 * 109.46997 * 175.20848 * 1 2 3 29 29 H 1.08999 * 109.46943 * 295.21215 * 1 2 3 30 30 H 1.09002 * 109.47212 * 55.20718 * 1 2 3 31 31 H 1.09000 * 109.46867 * 240.00533 * 2 1 3 32 32 H 1.09000 * 109.47126 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47292 * 300.00107 * 3 2 1 34 34 H 1.09007 * 109.47211 * 60.00460 * 3 2 1 35 35 H 1.09001 * 109.46465 * 54.09694 * 4 2 1 36 36 H 1.08997 * 109.47565 * 294.09949 * 4 2 1 37 37 H 1.09000 * 109.47085 * 305.79838 * 7 5 4 38 38 H 1.08999 * 109.47254 * 65.79609 * 7 5 4 39 39 H 1.08998 * 109.47203 * 185.80178 * 7 5 4 40 40 H 1.09001 * 109.47116 * 65.00195 * 8 5 4 41 41 H 1.09001 * 109.47557 * 305.00511 * 8 5 4 42 42 H 0.97002 * 120.00108 * 359.97438 * 11 9 8 43 43 H 1.09003 * 109.88111 * 338.86095 * 14 12 11 44 44 H 1.09001 * 109.87961 * 99.87293 * 14 12 11 45 45 H 0.96999 * 119.99768 * 180.02562 * 19 18 16 46 46 H 1.08996 * 110.36794 * 142.96907 * 24 15 14 47 47 H 1.09002 * 110.36342 * 265.29033 * 24 15 14 48 48 H 0.96702 * 114.00007 * 67.79819 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5628 -0.8510 1.1772 6 1 4.0051 0.1348 1.0331 7 6 3.9426 -1.7567 0.0040 8 6 4.0851 -1.4587 2.4806 9 6 5.5918 -1.4733 2.4597 10 8 6.1892 -1.0399 1.4973 11 7 6.2756 -1.9681 3.5105 12 6 7.7405 -1.9767 3.4928 13 1 8.1240 -1.0845 2.9978 14 6 8.2707 -3.2528 2.8057 15 7 9.4458 -3.7020 3.5665 16 6 10.1958 -4.8147 3.2932 17 1 9.9392 -5.4466 2.4559 18 6 11.2859 -5.1304 4.0926 19 7 11.5989 -4.3599 5.1128 20 14 12.3086 -6.6486 3.7203 21 1 11.7529 -7.3399 2.5292 22 1 13.7118 -6.2457 3.4483 23 1 12.2744 -7.5667 4.8869 24 6 9.6836 -2.7557 4.6716 25 6 8.3062 -2.0966 4.9325 26 1 8.4236 -1.1138 5.3893 27 8 7.4800 -2.9386 5.7390 28 1 -0.3633 -1.0241 -0.0858 29 1 -0.3633 0.4378 0.9298 30 1 -0.3634 0.5864 -0.8439 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8901 35 1 1.5930 -1.7138 1.3035 36 1 1.7656 -0.1501 2.1361 37 1 3.4181 -2.7079 0.0947 38 1 3.6620 -1.2749 -0.9326 39 1 5.0183 -1.9326 0.0142 40 1 3.7132 -2.4784 2.5807 41 1 3.7392 -0.8615 3.3242 42 1 5.7978 -2.3144 4.2804 43 1 7.5031 -4.0266 2.8180 44 1 8.5551 -3.0292 1.7775 45 1 12.3609 -4.5804 5.6711 46 1 10.0240 -3.2877 5.5599 47 1 10.4144 -2.0030 4.3758 48 1 7.7938 -3.0437 6.6477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220740887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:41:18 Heat of formation + Delta-G solvation = -85.091704 kcal Electronic energy + Delta-G solvation = -25027.381648 eV Core-core repulsion = 21503.175488 eV Total energy + Delta-G solvation = -3524.206160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.86538 -38.22161 -37.29076 -34.72689 -33.95519 -33.54515 -31.67622 -28.94675 -27.90719 -27.37633 -26.75302 -26.51451 -24.39135 -21.77774 -20.62470 -20.10377 -19.62579 -19.49546 -17.42832 -16.74517 -16.67634 -15.69589 -15.41129 -15.09093 -14.81078 -14.56474 -14.17026 -13.98041 -13.84328 -13.49782 -13.01362 -12.92538 -12.81197 -12.56516 -12.47570 -12.15683 -11.90942 -11.70835 -11.52796 -11.39984 -11.31310 -11.11101 -10.99917 -10.86448 -10.71861 -10.58765 -10.50220 -10.43127 -10.33145 -10.01110 -9.84040 -9.45283 -9.19961 -8.69784 -8.61329 -6.84138 -5.69215 -3.08821 2.91077 3.38978 3.43713 3.45930 3.48676 4.46926 4.52813 4.60972 4.67317 4.71506 4.91118 5.00149 5.13934 5.32363 5.37416 5.39030 5.41794 5.44205 5.45772 5.50634 5.55474 5.62736 5.65064 5.73467 5.75329 5.77181 5.90551 5.94058 5.94533 6.05322 6.07835 6.09948 6.21608 6.30097 6.39744 6.49968 6.64732 6.72967 6.99534 7.26690 7.57353 7.72353 7.89974 8.12721 8.31830 8.56210 9.18752 9.79760 10.43227 11.36077 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.002771 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.941280 B =10100.558735 C =10529.667471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.110 4.110 5 C -0.076 4.076 6 H 0.080 0.920 7 C -0.153 4.153 8 C -0.137 4.137 9 C 0.508 3.492 10 O -0.543 6.543 11 N -0.710 5.710 12 C 0.143 3.857 13 H 0.098 0.902 14 C 0.132 3.868 15 N -0.597 5.597 16 C -0.214 4.214 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.927 5.927 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.127 3.873 25 C 0.067 3.933 26 H 0.058 0.942 27 O -0.561 6.561 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.406 0.594 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.251 0.749 46 H 0.115 0.885 47 H 0.022 0.978 48 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.641 9.307 -2.868 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.207 4.207 4 C -0.148 4.148 5 C -0.095 4.095 6 H 0.098 0.902 7 C -0.211 4.211 8 C -0.177 4.177 9 C 0.294 3.706 10 O -0.421 6.421 11 N -0.362 5.362 12 C 0.037 3.963 13 H 0.116 0.884 14 C 0.005 3.995 15 N -0.323 5.323 16 C -0.343 4.343 17 H 0.096 0.904 18 C -0.209 4.209 19 N -0.577 5.577 20 Si 0.747 3.253 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.001 3.999 25 C 0.007 3.993 26 H 0.075 0.925 27 O -0.367 6.367 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.242 0.758 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.062 0.938 46 H 0.133 0.867 47 H 0.040 0.960 48 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -19.368 9.454 -4.053 21.930 hybrid contribution 0.729 -0.902 0.738 1.374 sum -18.639 8.553 -3.315 20.774 Atomic orbital electron populations 1.21848 0.95570 1.01489 1.01537 1.21153 0.95243 0.96477 0.98886 1.21904 1.01620 0.95881 1.01330 1.21724 0.95020 1.00399 0.97623 1.20929 0.94477 1.00419 0.93642 0.90152 1.21984 1.03478 0.98393 0.97198 1.21748 0.92359 1.03467 1.00153 1.20700 0.90041 0.77301 0.82547 1.90662 1.70961 1.47187 1.33263 1.45909 1.07176 1.62737 1.20362 1.22103 0.79139 0.99652 0.95374 0.88427 1.21583 0.90382 0.93003 0.94489 1.44305 1.30118 1.27137 1.30767 1.19153 1.05715 0.99364 1.10028 0.90374 1.24762 0.98743 0.99329 0.98035 1.69731 1.29693 1.38711 1.19567 0.85958 0.79893 0.82041 0.77403 1.20517 1.21762 1.21755 1.22595 0.89653 0.91925 0.95710 1.23571 0.93718 0.92378 0.89678 0.92455 1.86240 1.52534 1.71402 1.26501 0.92856 0.92857 0.92924 0.90848 0.92098 0.93081 0.92896 0.91962 0.92072 0.93534 0.92970 0.90559 0.89108 0.89282 0.75815 0.95379 0.95502 0.93796 0.86734 0.96030 0.77374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.19 37.16 0.34 -0.67 16 2 C -0.10 -0.79 2.79 -90.62 -0.25 -1.05 16 3 C -0.15 -1.21 8.97 37.16 0.33 -0.87 16 4 C -0.11 -0.91 4.14 -26.73 -0.11 -1.02 16 5 C -0.08 -0.80 1.91 -90.62 -0.17 -0.97 16 6 H 0.08 0.95 6.19 -51.93 -0.32 0.63 16 7 C -0.15 -1.80 8.60 37.16 0.32 -1.48 16 8 C -0.14 -1.47 5.17 -27.89 -0.14 -1.61 16 9 C 0.51 7.62 7.50 -10.99 -0.08 7.54 16 10 O -0.54 -10.00 13.72 5.55 0.08 -9.93 16 11 N -0.71 -11.00 5.09 -52.03 -0.26 -11.27 16 12 C 0.14 2.67 3.12 -66.10 -0.21 2.46 16 13 H 0.10 1.88 7.69 -51.93 -0.40 1.48 16 14 C 0.13 3.00 6.99 -3.06 -0.02 2.97 16 15 N -0.60 -15.56 3.39 -170.08 -0.58 -16.14 16 16 C -0.21 -6.08 10.27 -15.06 -0.15 -6.24 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 19 N -0.93 -26.66 10.09 55.49 0.56 -26.10 16 20 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 C 0.13 2.99 5.62 -2.53 -0.01 2.98 16 25 C 0.07 1.22 4.28 -24.59 -0.11 1.12 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 O -0.56 -9.49 12.23 -35.23 -0.43 -9.93 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 32 H 0.06 0.55 6.49 -51.93 -0.34 0.21 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.56 6.73 -51.93 -0.35 0.21 16 39 H 0.08 1.13 5.87 -51.93 -0.30 0.83 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.41 5.65 7.57 -40.82 -0.31 5.34 16 43 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.12 2.97 5.87 -51.93 -0.30 2.67 16 47 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.38 5.15 9.12 45.56 0.42 5.57 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -31.89 371.43 -8.13 -40.03 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.70 Total: 7.83 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -0.37 Total: 2.67 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.28 Total: -53.50 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.35 Total: -19.85 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.89 -8.13 -40.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220740887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.065 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds