Wall clock time and date at job start Fri Apr 10 2020 20:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46975 * 2 1 4 4 C 1.52995 * 109.47358 * 119.99908 * 2 1 3 5 5 C 1.52998 * 109.47367 * 174.09421 * 4 2 1 6 6 H 1.09002 * 109.46832 * 54.98168 * 5 4 2 7 7 C 1.52997 * 109.47421 * 294.98330 * 5 4 2 8 8 C 1.52998 * 109.47213 * 174.97920 * 5 4 2 9 9 C 1.50696 * 109.47129 * 185.00147 * 8 5 4 10 10 O 1.21285 * 120.00144 * 0.02562 * 9 8 5 11 11 N 1.34777 * 119.99945 * 180.02562 * 9 8 5 12 12 C 1.46501 * 120.00079 * 180.27903 * 11 9 8 13 13 H 1.09004 * 110.64168 * 36.40578 * 12 11 9 14 14 C 1.54329 * 110.71883 * 273.26903 * 12 11 9 15 15 N 1.47023 * 107.26772 * 219.44226 * 14 12 11 16 16 C 1.36941 * 125.64236 * 178.97738 * 15 14 12 17 17 H 1.07996 * 120.00087 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99682 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00008 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00024 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46768 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46738 * 119.99558 * 20 18 16 23 23 H 1.48493 * 109.47128 * 239.99737 * 20 18 16 24 24 C 1.47417 * 108.70686 * 358.94200 * 15 14 12 25 25 C 1.54906 * 104.83128 * 24.12483 * 24 15 14 26 26 H 1.09006 * 111.00532 * 204.91726 * 25 24 15 27 27 O 1.42905 * 111.00352 * 81.06892 * 25 24 15 28 28 H 1.08998 * 109.46997 * 175.20848 * 1 2 3 29 29 H 1.08999 * 109.46943 * 295.21215 * 1 2 3 30 30 H 1.09002 * 109.47212 * 55.20718 * 1 2 3 31 31 H 1.09000 * 109.46867 * 240.00533 * 2 1 3 32 32 H 1.09000 * 109.47126 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47292 * 300.00107 * 3 2 1 34 34 H 1.09007 * 109.47211 * 60.00460 * 3 2 1 35 35 H 1.09001 * 109.46465 * 54.09694 * 4 2 1 36 36 H 1.08997 * 109.47565 * 294.09949 * 4 2 1 37 37 H 1.09000 * 109.47085 * 305.79838 * 7 5 4 38 38 H 1.08999 * 109.47254 * 65.79609 * 7 5 4 39 39 H 1.08998 * 109.47203 * 185.80178 * 7 5 4 40 40 H 1.09001 * 109.47116 * 65.00195 * 8 5 4 41 41 H 1.09001 * 109.47557 * 305.00511 * 8 5 4 42 42 H 0.97002 * 120.00108 * 359.97438 * 11 9 8 43 43 H 1.09003 * 109.88111 * 338.86095 * 14 12 11 44 44 H 1.09001 * 109.87961 * 99.87293 * 14 12 11 45 45 H 0.96999 * 119.99768 * 180.02562 * 19 18 16 46 46 H 1.08996 * 110.36794 * 142.96907 * 24 15 14 47 47 H 1.09002 * 110.36342 * 265.29033 * 24 15 14 48 48 H 0.96702 * 114.00007 * 67.79819 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5628 -0.8510 1.1772 6 1 4.0051 0.1348 1.0331 7 6 3.9426 -1.7567 0.0040 8 6 4.0851 -1.4587 2.4806 9 6 5.5918 -1.4733 2.4597 10 8 6.1892 -1.0399 1.4973 11 7 6.2756 -1.9681 3.5105 12 6 7.7405 -1.9767 3.4928 13 1 8.1240 -1.0845 2.9978 14 6 8.2707 -3.2528 2.8057 15 7 9.4458 -3.7020 3.5665 16 6 10.1958 -4.8147 3.2932 17 1 9.9392 -5.4466 2.4559 18 6 11.2859 -5.1304 4.0926 19 7 11.5989 -4.3599 5.1128 20 14 12.3086 -6.6486 3.7203 21 1 11.7529 -7.3399 2.5292 22 1 13.7118 -6.2457 3.4483 23 1 12.2744 -7.5667 4.8869 24 6 9.6836 -2.7557 4.6716 25 6 8.3062 -2.0966 4.9325 26 1 8.4236 -1.1138 5.3893 27 8 7.4800 -2.9386 5.7390 28 1 -0.3633 -1.0241 -0.0858 29 1 -0.3633 0.4378 0.9298 30 1 -0.3634 0.5864 -0.8439 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8901 35 1 1.5930 -1.7138 1.3035 36 1 1.7656 -0.1501 2.1361 37 1 3.4181 -2.7079 0.0947 38 1 3.6620 -1.2749 -0.9326 39 1 5.0183 -1.9326 0.0142 40 1 3.7132 -2.4784 2.5807 41 1 3.7392 -0.8615 3.3242 42 1 5.7978 -2.3144 4.2804 43 1 7.5031 -4.0266 2.8180 44 1 8.5551 -3.0292 1.7775 45 1 12.3609 -4.5804 5.6711 46 1 10.0240 -3.2877 5.5599 47 1 10.4144 -2.0030 4.3758 48 1 7.7938 -3.0437 6.6477 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220740887.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:41:18 Heat of formation + Delta-G solvation = -107.391712 kcal Electronic energy + Delta-G solvation = -25028.348649 eV Core-core repulsion = 21503.175488 eV Total energy + Delta-G solvation = -3525.173161 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 298.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.13597 -39.61708 -38.22762 -36.37645 -35.41450 -34.39423 -33.57271 -30.56754 -29.33724 -28.12601 -27.93686 -27.44924 -26.26915 -22.90389 -22.27780 -21.44726 -20.94077 -20.24346 -19.22186 -18.25843 -17.93189 -16.95556 -16.78185 -16.43220 -16.13791 -15.91793 -15.55237 -15.04246 -14.83294 -14.70368 -14.56279 -14.31888 -14.09511 -13.68021 -13.53813 -13.24192 -13.15006 -12.99885 -12.82630 -12.76771 -12.55268 -12.31749 -12.23912 -12.13696 -12.08839 -11.91685 -11.84527 -11.79297 -11.47495 -11.22487 -11.15478 -10.92167 -10.74157 -10.58927 -10.01790 -8.92089 -7.82649 -5.26113 1.45105 1.45879 1.56379 1.72240 2.20790 2.48130 3.21253 3.28389 3.61260 3.80729 3.83190 3.86895 3.94990 4.00627 4.16764 4.24297 4.31144 4.38424 4.48932 4.57040 4.70643 4.72346 4.75446 4.77209 4.84877 4.85398 4.90962 4.97754 5.02140 5.09413 5.10883 5.19324 5.22875 5.32755 5.37527 5.39350 5.44659 5.50582 5.56358 5.63567 5.67925 5.70060 6.24151 6.69097 6.91256 7.07136 7.37403 7.71413 8.34247 9.19617 Molecular weight = 298.20amu Principal moments of inertia in cm(-1) A = 0.031071 B = 0.002771 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.941280 B =10100.558735 C =10529.667471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.149 4.149 4 C -0.102 4.102 5 C -0.073 4.073 6 H 0.064 0.936 7 C -0.151 4.151 8 C -0.128 4.128 9 C 0.503 3.497 10 O -0.581 6.581 11 N -0.702 5.702 12 C 0.154 3.846 13 H 0.092 0.908 14 C 0.134 3.866 15 N -0.617 5.617 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.061 4.061 19 N -0.945 5.945 20 Si 0.981 3.019 21 H -0.273 1.273 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.126 3.874 25 C 0.091 3.909 26 H 0.094 0.906 27 O -0.562 6.562 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.040 0.960 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.417 0.583 43 H 0.021 0.979 44 H 0.006 0.994 45 H 0.250 0.750 46 H 0.091 0.909 47 H -0.001 1.001 48 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 9.434 -1.911 23.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.207 4.207 4 C -0.140 4.140 5 C -0.092 4.092 6 H 0.083 0.917 7 C -0.208 4.208 8 C -0.168 4.168 9 C 0.292 3.708 10 O -0.461 6.461 11 N -0.355 5.355 12 C 0.048 3.952 13 H 0.110 0.890 14 C 0.007 3.993 15 N -0.343 5.343 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.254 4.254 19 N -0.595 5.595 20 Si 0.809 3.191 21 H -0.197 1.197 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.000 4.000 25 C 0.031 3.969 26 H 0.112 0.888 27 O -0.370 6.370 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.127 0.873 41 H 0.138 0.862 42 H 0.255 0.745 43 H 0.039 0.961 44 H 0.024 0.976 45 H 0.060 0.940 46 H 0.109 0.891 47 H 0.017 0.983 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -21.631 9.585 -3.069 23.857 hybrid contribution 1.437 -0.942 0.392 1.763 sum -20.193 8.643 -2.677 22.128 Atomic orbital electron populations 1.21816 0.94466 1.01869 1.02001 1.21158 0.96129 0.96156 0.98465 1.21894 1.00653 0.96249 1.01873 1.21665 0.92873 1.01192 0.98254 1.20899 0.96160 0.99141 0.92981 0.91727 1.21936 1.01121 0.99408 0.98349 1.21806 0.88487 1.05196 1.01305 1.21549 0.91862 0.75939 0.81426 1.90661 1.72141 1.48668 1.34605 1.45804 1.05569 1.62930 1.21156 1.21739 0.81286 0.97102 0.95115 0.89032 1.21623 0.89303 0.94704 0.93696 1.44578 1.30730 1.27035 1.31959 1.19421 1.06790 1.00459 1.10309 0.91001 1.25568 0.99703 1.02140 0.97985 1.69951 1.29774 1.39831 1.19956 0.84970 0.77961 0.78682 0.77443 1.19742 1.21714 1.21222 1.22511 0.92587 0.90987 0.93899 1.23247 0.90357 0.93416 0.89924 0.88837 1.86206 1.51823 1.71280 1.27671 0.92493 0.92241 0.92688 0.91753 0.93567 0.92718 0.92219 0.91055 0.90733 0.92477 0.92565 0.94118 0.87275 0.86239 0.74493 0.96132 0.97592 0.94025 0.89086 0.98312 0.75411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 71.98 0.66 -0.98 16 2 C -0.10 -1.42 2.79 -10.79 -0.03 -1.45 16 3 C -0.15 -2.20 8.97 71.98 0.65 -1.56 16 4 C -0.10 -1.42 4.14 30.59 0.13 -1.29 16 5 C -0.07 -1.42 1.91 -10.80 -0.02 -1.44 16 6 H 0.06 1.48 6.19 -2.39 -0.01 1.47 16 7 C -0.15 -3.47 8.60 71.98 0.62 -2.85 16 8 C -0.13 -2.40 5.17 29.85 0.15 -2.25 16 9 C 0.50 14.56 7.50 87.66 0.66 15.21 16 10 O -0.58 -21.64 13.72 -3.04 -0.04 -21.69 16 11 N -0.70 -20.65 5.09 -436.91 -2.22 -22.87 16 12 C 0.15 5.70 3.12 46.18 0.14 5.85 16 13 H 0.09 3.53 7.69 -2.38 -0.02 3.52 16 14 C 0.13 6.19 6.99 86.73 0.61 6.80 16 15 N -0.62 -32.95 3.39 -692.00 -2.35 -35.30 16 16 C -0.24 -14.00 10.27 84.03 0.86 -13.14 16 17 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 18 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 19 N -0.95 -55.13 10.09 21.65 0.22 -54.91 16 20 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.13 6.01 5.62 86.86 0.49 6.50 16 25 C 0.09 3.20 4.28 31.98 0.14 3.34 16 26 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 27 O -0.56 -17.75 12.23 -148.98 -1.82 -19.58 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 32 H 0.05 0.81 6.49 -2.39 -0.02 0.80 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.20 6.73 -2.39 -0.02 1.19 16 39 H 0.04 1.23 5.87 -2.39 -0.01 1.22 16 40 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.42 10.47 7.57 -92.71 -0.70 9.77 16 43 H 0.02 0.98 8.03 -2.39 -0.02 0.96 16 44 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.09 4.80 5.87 -2.39 -0.01 4.79 16 47 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 48 H 0.40 9.79 9.12 -74.06 -0.68 9.12 16 Total: -1.00 -70.89 371.43 0.90 -69.99 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.43 Total: 26.52 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 5.52 Total: 9.71 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -4.35 Total: -113.09 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.86 Total: -41.26 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.89 0.90 -69.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220740887.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.406 kcal (2) G-P(sol) polarization free energy of solvation -70.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds