Wall clock time and date at job start Fri Apr 10 2020 20:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38236 * 119.99560 * 2 1 4 4 C 1.38202 * 120.02512 * 179.97438 * 3 2 1 5 5 C 1.50706 * 119.98882 * 180.02562 * 4 3 2 6 6 N 1.46909 * 109.47046 * 105.02249 * 5 4 3 7 7 C 1.47479 * 110.99691 * 265.97021 * 6 5 4 8 8 C 1.53514 * 87.93020 * 221.29735 * 7 6 5 9 9 C 1.50697 * 114.34504 * 139.68687 * 8 7 6 10 10 H 1.07998 * 119.99606 * 266.07482 * 9 8 7 11 11 C 1.37873 * 120.00263 * 86.07424 * 9 8 7 12 12 N 1.31525 * 119.99891 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00244 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47101 * 60.00056 * 13 11 9 15 15 H 1.48502 * 109.47229 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47114 * 300.00048 * 13 11 9 17 17 C 1.47477 * 110.99820 * 169.99646 * 6 5 4 18 18 C 1.38375 * 120.01723 * 0.04210 * 4 3 2 19 19 Cl 1.73594 * 120.00886 * 180.25403 * 18 4 3 20 20 C 1.38315 * 119.98316 * 359.97438 * 18 4 3 21 21 C 1.38340 * 119.99003 * 180.02562 * 2 1 3 22 22 Cl 1.73600 * 120.00984 * 359.97210 * 21 2 1 23 23 H 1.09003 * 109.47296 * 269.97585 * 1 2 3 24 24 H 1.09007 * 109.47398 * 29.97811 * 1 2 3 25 25 H 1.09008 * 109.47568 * 149.97723 * 1 2 3 26 26 H 1.07998 * 119.98722 * 0.02562 * 3 2 1 27 27 H 1.08999 * 109.47092 * 225.02098 * 5 4 3 28 28 H 1.09003 * 109.47502 * 345.02480 * 5 4 3 29 29 H 1.08997 * 113.48041 * 336.06051 * 7 6 5 30 30 H 1.09002 * 113.47733 * 106.53114 * 7 6 5 31 31 H 1.09003 * 114.16591 * 272.38186 * 8 7 6 32 32 H 0.96994 * 119.99880 * 179.97438 * 12 11 9 33 33 H 1.09001 * 113.47604 * 253.46567 * 17 6 5 34 34 H 1.08998 * 113.47770 * 23.87906 * 17 6 5 35 35 H 1.08007 * 120.00981 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5801 1.1979 0.0005 5 6 4.3327 2.5036 0.0011 6 7 4.8877 2.7483 1.3391 7 6 3.9763 3.5819 2.1450 8 6 5.2100 4.3404 2.6542 9 6 5.0189 5.8307 2.7700 10 1 5.3076 6.4771 1.9545 11 6 4.4754 6.3690 3.9172 12 7 4.1243 5.5817 4.9106 13 14 4.2392 8.2163 4.0611 14 1 3.3341 8.6852 2.9812 15 1 3.6422 8.5376 5.3823 16 1 5.5540 8.8949 3.9344 17 6 5.8246 3.8871 1.3225 18 6 4.2729 0.0001 0.0002 19 17 6.0088 0.0013 0.0075 20 6 3.5820 -1.1981 -0.0002 21 6 2.1984 -1.1982 -0.0005 22 17 1.3304 -2.7016 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3634 -0.8898 -0.5142 26 1 1.6578 2.1323 0.0004 27 1 5.1437 2.4558 -0.7255 28 1 3.6541 3.3143 -0.2645 29 1 3.3055 4.1968 1.5451 30 1 3.4555 3.0265 2.9251 31 1 5.6750 3.8964 3.5344 32 1 3.7424 5.9604 5.7177 33 1 6.8702 3.5904 1.4055 34 1 5.6477 4.5830 0.5024 35 1 4.1223 -2.1333 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237702142.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:41:08 Heat of formation + Delta-G solvation = 36.563975 kcal Electronic energy + Delta-G solvation = -19251.957077 eV Core-core repulsion = 16109.226687 eV Total energy + Delta-G solvation = -3142.730391 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 299.054 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.92408 -38.66483 -36.77038 -36.22191 -33.34395 -32.55443 -31.85381 -28.66413 -26.92596 -25.63701 -24.76882 -23.01579 -22.34903 -20.40316 -18.63009 -17.18900 -16.64198 -16.33074 -15.22553 -14.92169 -14.50232 -14.32106 -14.01955 -13.93324 -13.72391 -13.20431 -12.83879 -12.49140 -12.22612 -12.18427 -11.87995 -11.67503 -11.54109 -11.19149 -10.97786 -10.95458 -10.89011 -10.73134 -10.55077 -10.29232 -9.78689 -9.34789 -8.98134 -8.84325 -8.48619 -8.38351 -8.02439 -6.06902 -4.11853 0.97069 1.07431 1.84211 2.38727 3.28361 3.33994 3.35588 3.38640 4.38278 4.54770 4.63131 4.77585 5.01861 5.10526 5.22420 5.31730 5.44977 5.47874 5.51856 5.66556 5.80414 5.84073 5.94490 6.05128 6.20222 6.29188 6.35383 6.46619 6.56642 6.67196 6.69426 7.12680 7.15110 7.70901 7.88742 8.03672 8.35441 8.91359 9.53295 11.02517 Molecular weight = 299.05amu Principal moments of inertia in cm(-1) A = 0.020358 B = 0.003796 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.043006 B = 7374.064145 C = 8280.106122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.092 4.092 4 C -0.042 4.042 5 C 0.052 3.948 6 N -0.471 5.471 7 C 0.005 3.995 8 C 0.043 3.957 9 C -0.518 4.518 10 H 0.057 0.943 11 C 0.068 3.932 12 N -0.885 5.885 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.003 4.003 18 C -0.011 4.011 19 Cl -0.049 7.049 20 C -0.103 4.103 21 C -0.035 4.035 22 Cl -0.067 7.067 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -13.210 -11.669 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.074 4.074 3 C -0.111 4.111 4 C -0.043 4.043 5 C -0.076 4.076 6 N -0.193 5.193 7 C -0.124 4.124 8 C 0.024 3.976 9 C -0.556 4.556 10 H 0.075 0.925 11 C -0.135 4.135 12 N -0.522 5.522 13 Si 0.718 3.282 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.131 4.131 18 C -0.039 4.039 19 Cl -0.020 7.020 20 C -0.122 4.122 21 C -0.062 4.062 22 Cl -0.038 7.038 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.156 0.844 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.720 -14.018 -11.274 18.598 hybrid contribution -0.441 1.517 -0.230 1.596 sum -5.160 -12.501 -11.504 17.755 Atomic orbital electron populations 1.20872 0.90024 1.03388 1.03197 1.19782 0.96938 0.91161 0.99473 1.20914 0.92767 0.97567 0.99876 1.19876 0.93291 0.94630 0.96512 1.21678 0.98010 0.92362 0.95591 1.68949 1.10601 1.31892 1.07818 1.24140 0.97935 0.93931 0.96418 1.20072 0.90839 0.94984 0.91721 1.20990 1.41913 0.91340 1.01357 0.92491 1.25011 0.95145 0.97801 0.95558 1.69962 1.41695 1.34883 1.05708 0.86688 0.78510 0.85734 0.77237 1.20262 1.21243 1.20151 1.24001 0.96912 0.91010 1.01208 1.20529 0.85666 0.93486 1.04204 1.98375 1.08264 1.98789 1.96584 1.20809 0.92030 0.97857 1.01535 1.20512 0.91597 0.86777 1.07282 1.98348 1.76601 1.31913 1.96985 0.90384 0.90917 0.90875 0.84369 0.90225 0.92800 0.92880 0.91877 0.91796 0.92798 0.91902 0.92789 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.61 36.00 0.35 -0.78 16 2 C -0.07 -0.88 5.88 -104.59 -0.62 -1.50 16 3 C -0.09 -1.23 9.32 -39.60 -0.37 -1.60 16 4 C -0.04 -0.62 5.47 -104.58 -0.57 -1.19 16 5 C 0.05 0.84 4.27 -4.97 -0.02 0.82 16 6 N -0.47 -9.13 6.21 -246.06 -1.53 -10.66 16 7 C 0.00 0.10 7.28 -7.54 -0.05 0.05 16 8 C 0.04 1.05 3.76 -91.24 -0.34 0.71 16 9 C -0.52 -13.80 8.83 -34.44 -0.30 -14.10 16 10 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 11 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 12 N -0.89 -25.23 13.26 55.43 0.74 -24.50 16 13 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 C 0.00 -0.06 7.25 -7.54 -0.05 -0.11 16 18 C -0.01 -0.16 6.31 -39.50 -0.25 -0.41 16 19 Cl -0.05 -0.71 27.55 -51.86 -1.43 -2.14 16 20 C -0.10 -1.32 9.62 -39.51 -0.38 -1.70 16 21 C -0.03 -0.43 6.31 -39.50 -0.25 -0.68 16 22 Cl -0.07 -0.72 27.30 -51.86 -1.42 -2.14 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.07 0.64 6.90 -51.92 -0.36 0.28 16 26 H 0.14 1.67 8.00 -52.49 -0.42 1.25 16 27 H 0.08 1.22 7.53 -51.93 -0.39 0.83 16 28 H 0.05 0.85 7.11 -51.93 -0.37 0.48 16 29 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 30 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.07 7.87 -51.93 -0.41 0.66 16 35 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 324.14 15.07 4.88 4.88 Total: -1.00 -27.64 324.14 -11.14 -38.78 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.41 Total: -1.19 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.96 Total: -18.76 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.79 Total: -35.15 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -2.84 Total: -4.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.64 -11.14 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237702142.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.344 kcal (2) G-P(sol) polarization free energy of solvation -27.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds