Wall clock time and date at job start Fri Apr 10 2020 20:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47099 * 2 1 4 4 C 1.34227 * 117.00030 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00176 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47134 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.46870 * 55.54531 * 7 6 4 9 9 C 1.50693 * 109.47327 * 175.54626 * 7 6 4 10 10 H 1.08006 * 119.99848 * 245.44657 * 9 7 6 11 11 C 1.37878 * 120.00293 * 65.43701 * 9 7 6 12 12 N 1.31512 * 120.00284 * 199.09678 * 11 9 7 13 13 Si 1.86803 * 119.99685 * 19.09587 * 11 9 7 14 14 H 1.48499 * 109.46718 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47004 * 299.99780 * 13 11 9 16 16 H 1.48503 * 109.47088 * 60.00062 * 13 11 9 17 17 O 1.42900 * 109.46904 * 295.54389 * 7 6 4 18 18 C 1.35941 * 116.99776 * 155.52032 * 17 7 6 19 19 C 1.39048 * 120.47652 * 5.79491 * 18 17 7 20 20 C 1.38599 * 118.39038 * 179.97438 * 19 18 17 21 21 C 1.38199 * 119.24777 * 0.02562 * 20 19 18 22 22 N 1.31889 * 120.89874 * 0.02562 * 21 20 19 23 23 C 1.31920 * 121.75907 * 359.68064 * 22 21 20 24 24 Cl 1.73599 * 119.66937 * 180.31715 * 23 22 21 25 25 H 1.09006 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47009 * 299.99402 * 1 2 3 27 27 H 1.08997 * 109.47543 * 60.00200 * 1 2 3 28 28 H 1.08994 * 109.46736 * 240.00001 * 2 1 3 29 29 H 1.09001 * 109.47285 * 120.00209 * 2 1 3 30 30 H 1.09001 * 109.46759 * 60.00538 * 6 4 3 31 31 H 1.08997 * 109.47389 * 300.00564 * 6 4 3 32 32 H 0.97010 * 119.99882 * 354.94491 * 12 11 9 33 33 H 1.08007 * 120.80727 * 359.94989 * 19 18 17 34 34 H 1.08003 * 120.37641 * 179.97438 * 20 19 18 35 35 H 1.08002 * 119.54898 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8574 0.0001 8 1 5.7810 2.2574 -0.8470 9 6 6.0244 4.2456 -0.1107 10 1 6.5865 4.5285 -0.9885 11 6 5.8334 5.1546 0.9082 12 7 5.9895 6.4404 0.6803 13 14 5.3531 4.5597 2.6126 14 1 5.2104 5.7253 3.5216 15 1 4.0622 3.8297 2.5365 16 1 6.4055 3.6513 3.1347 17 8 5.8938 2.2528 1.2160 18 6 7.1086 1.6432 1.1934 19 6 7.9175 1.7245 0.0654 20 6 9.1480 1.0870 0.0895 21 6 9.5283 0.3961 1.2243 22 7 8.7374 0.3368 2.2781 23 6 7.5614 0.9341 2.2981 24 17 6.5675 0.8276 3.7174 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.5843 3.4700 0.8896 31 1 3.5851 3.4691 -0.8904 32 1 6.3097 6.7445 -0.1835 33 1 7.5947 2.2708 -0.8086 34 1 9.8018 1.1290 -0.7691 35 1 10.4859 -0.1028 1.2483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225587607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:10 Heat of formation + Delta-G solvation = -98.986460 kcal Electronic energy + Delta-G solvation = -22597.575736 eV Core-core repulsion = 19008.258272 eV Total energy + Delta-G solvation = -3589.317463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 299.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28599 -39.82899 -37.77308 -36.17061 -36.01134 -33.43372 -31.89238 -31.67800 -31.11807 -29.33638 -26.40943 -23.50414 -23.22757 -22.77481 -21.41940 -20.17140 -18.45611 -17.44705 -17.09983 -16.57533 -16.39323 -16.10449 -15.80786 -14.85266 -14.38848 -14.01978 -13.71706 -13.67591 -13.34870 -13.03526 -12.70862 -12.63918 -12.48584 -12.17637 -11.78061 -11.62687 -11.47341 -11.26755 -10.92274 -10.74107 -10.63436 -10.41179 -10.33786 -9.92445 -9.52156 -9.29510 -9.24055 -9.10323 -8.54671 -7.66063 -6.79224 -4.59786 1.42248 1.74292 2.41076 2.69499 3.02620 3.32147 3.43424 3.67172 4.06448 4.17545 4.33190 4.94485 4.94973 4.98047 5.00118 5.15869 5.24523 5.29644 5.35284 5.49377 5.68027 5.70343 5.76136 5.88537 5.89953 5.96125 6.25373 6.37409 6.49088 6.60214 6.79431 6.85307 7.39818 7.88357 8.02880 8.18728 8.21132 8.54463 9.20751 10.56593 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.011641 B = 0.007312 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.798594 B = 3828.324410 C = 4798.973455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.506 6.506 6 C -0.110 4.110 7 C 0.192 3.808 8 H 0.049 0.951 9 C -0.639 4.639 10 H 0.071 0.929 11 C 0.052 3.948 12 N -0.873 5.873 13 Si 1.054 2.946 14 H -0.299 1.299 15 H -0.277 1.277 16 H -0.266 1.266 17 O -0.302 6.302 18 C 0.154 3.846 19 C -0.142 4.142 20 C -0.134 4.134 21 C 0.050 3.950 22 N -0.451 5.451 23 C 0.126 3.874 24 Cl -0.038 7.038 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.273 0.727 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -10.326 -1.900 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.300 3.700 5 O -0.393 6.393 6 C -0.147 4.147 7 C 0.137 3.863 8 H 0.067 0.933 9 C -0.674 4.674 10 H 0.089 0.911 11 C -0.158 4.158 12 N -0.503 5.503 13 Si 0.884 3.116 14 H -0.227 1.227 15 H -0.204 1.204 16 H -0.191 1.191 17 O -0.215 6.215 18 C 0.103 3.897 19 C -0.169 4.169 20 C -0.154 4.154 21 C -0.108 4.108 22 N -0.162 5.162 23 C -0.040 4.040 24 Cl -0.009 7.009 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.153 0.847 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.626 -10.536 0.582 11.158 hybrid contribution 0.208 -0.129 -2.408 2.421 sum -3.418 -10.665 -1.826 11.347 Atomic orbital electron populations 1.21789 0.93059 1.02528 1.03420 1.22916 0.95032 0.81275 1.02268 1.86557 1.25643 1.31507 1.84544 1.24550 0.79884 0.93837 0.71733 1.90622 1.60213 1.43299 1.45198 1.22221 0.96253 0.89317 1.06926 1.20381 0.88920 0.94124 0.82843 0.93275 1.22171 1.41508 0.95926 1.07821 0.91114 1.25961 0.92934 0.93110 1.03842 1.70913 1.37644 1.14402 1.27346 0.83868 0.78341 0.74527 0.74886 1.22729 1.20412 1.19123 1.86025 1.29681 1.65672 1.40073 1.19348 0.87537 0.90320 0.92502 1.21835 0.94528 1.01288 0.99231 1.22001 0.96530 0.97357 0.99522 1.22261 0.99025 1.00734 0.88742 1.66875 1.02559 1.17940 1.28872 1.20820 0.92652 1.01469 0.89009 1.98350 1.66663 1.97138 1.38797 0.90647 0.91531 0.91615 0.91673 0.91508 0.86820 0.86308 0.91675 0.82905 0.84676 0.82574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.16 0.38 -1.09 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -6.11 10.22 -39.25 -0.40 -6.51 16 4 C 0.46 8.74 7.83 36.01 0.28 9.02 16 5 O -0.51 -10.68 15.16 -24.17 -0.37 -11.05 16 6 C -0.11 -2.19 5.22 -27.88 -0.15 -2.33 16 7 C 0.19 4.21 1.33 -27.89 -0.04 4.18 16 8 H 0.05 1.05 6.23 -51.93 -0.32 0.72 16 9 C -0.64 -15.87 8.37 -34.44 -0.29 -16.16 16 10 H 0.07 1.85 8.06 -52.48 -0.42 1.43 16 11 C 0.05 1.39 5.33 -17.82 -0.09 1.29 16 12 N -0.87 -24.59 13.70 55.43 0.76 -23.83 16 13 Si 1.05 25.41 24.86 -169.99 -4.23 21.18 16 14 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 15 H -0.28 -6.21 5.57 56.52 0.32 -5.90 16 16 H -0.27 -6.38 6.59 56.52 0.37 -6.00 16 17 O -0.30 -6.86 4.68 -34.51 -0.16 -7.02 16 18 C 0.15 3.33 6.57 -39.05 -0.26 3.08 16 19 C -0.14 -2.72 8.79 -39.15 -0.34 -3.07 16 20 C -0.13 -2.11 10.10 -39.46 -0.40 -2.51 16 21 C 0.05 0.79 11.18 -17.54 -0.20 0.60 16 22 N -0.45 -8.67 10.34 -10.24 -0.11 -8.77 16 23 C 0.13 2.64 7.29 -17.28 -0.13 2.52 16 24 Cl -0.04 -0.76 28.39 -51.86 -1.47 -2.23 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 29 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.11 2.36 4.92 -51.93 -0.26 2.11 16 31 H 0.12 2.13 8.14 -51.93 -0.42 1.70 16 32 H 0.27 7.54 8.73 -40.82 -0.36 7.18 16 33 H 0.15 2.90 5.84 -52.48 -0.31 2.60 16 34 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -29.82 313.81 -6.19 -36.01 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.96 Total: 0.94 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.99 Total: -3.45 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.65 Total: -32.60 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.93 Total: -24.58 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.23 Total: 21.18 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.47 Total: -2.23 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.82 -6.19 -36.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225587607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.973 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds