Wall clock time and date at job start Fri Apr 10 2020 20:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47042 * 2 1 4 4 C 1.50698 * 109.47279 * 120.00101 * 2 1 3 5 5 H 1.08004 * 119.99663 * 119.99358 * 4 2 1 6 6 C 1.37873 * 120.00409 * 300.00690 * 4 2 1 7 7 N 1.31519 * 119.99665 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00197 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47420 * 89.99542 * 8 6 4 10 10 H 1.48504 * 109.46909 * 209.99422 * 8 6 4 11 11 H 1.48496 * 109.47165 * 329.99008 * 8 6 4 12 12 S 1.81403 * 109.47080 * 240.00325 * 2 1 3 13 13 C 1.76198 * 102.99804 * 172.12091 * 12 2 1 14 14 C 1.38781 * 120.10801 * 354.28420 * 13 12 2 15 15 C 1.38203 * 119.98873 * 179.97438 * 14 13 12 16 16 C 1.38308 * 120.21699 * 359.97438 * 15 14 13 17 17 C 1.38227 * 120.21696 * 359.75436 * 16 15 14 18 18 C 1.38720 * 120.00175 * 0.50384 * 17 16 15 19 19 N 1.39924 * 120.10399 * 179.77237 * 18 17 16 20 20 C 1.35963 * 120.00131 * 359.71836 * 19 18 17 21 21 C 1.37797 * 119.99854 * 179.72539 * 20 19 18 22 22 C 1.43206 * 120.00188 * 0.28022 * 21 20 19 23 23 N 6.57488 * 93.71635 * 233.56461 * 2 1 3 24 24 C 1.43203 * 120.00211 * 180.28010 * 21 20 19 25 25 N 9.43222 * 118.56728 * 236.42348 * 2 1 3 26 26 H 1.08996 * 109.47433 * 66.02953 * 1 2 3 27 27 H 1.09005 * 109.47431 * 186.02867 * 1 2 3 28 28 H 1.09007 * 109.47420 * 306.02971 * 1 2 3 29 29 H 0.97000 * 120.00015 * 180.02562 * 7 6 4 30 30 H 1.07992 * 120.00501 * 359.97438 * 14 13 12 31 31 H 1.08003 * 119.89121 * 179.97438 * 15 14 13 32 32 H 1.07997 * 119.89405 * 179.97438 * 16 15 14 33 33 H 1.08003 * 120.00601 * 180.27329 * 17 16 15 34 34 H 0.96999 * 119.99774 * 179.72537 * 19 18 17 35 35 H 1.07996 * 119.99836 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9493 5.1122 11 1 2.4880 -2.5655 3.7120 12 16 2.1347 -0.8551 -1.4812 13 6 3.8701 -0.5546 -1.4315 14 6 4.4033 0.2888 -0.4670 15 6 5.7650 0.5223 -0.4300 16 6 6.6002 -0.0826 -1.3515 17 6 6.0792 -0.9287 -2.3124 18 6 4.7132 -1.1652 -2.3613 19 7 4.1829 -2.0175 -3.3361 20 6 5.0062 -2.6109 -4.2410 21 6 4.4846 -3.4547 -5.1974 22 6 3.0748 -3.7019 -5.2421 23 7 1.9562 -3.8967 -5.2785 24 6 5.3523 -4.0844 -6.1467 25 7 6.0404 -4.5814 -6.9017 26 1 -0.3634 0.4175 -0.9390 27 1 -0.3634 -1.0220 0.1079 28 1 -0.3634 0.6045 0.8311 29 1 0.7093 1.1615 3.4845 30 1 3.7543 0.7626 0.2545 31 1 6.1782 1.1793 0.3211 32 1 7.6635 0.1038 -1.3180 33 1 6.7351 -1.4027 -3.0277 34 1 3.2280 -2.1850 -3.3663 35 1 6.0694 -2.4247 -4.2071 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066813708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:36 Heat of formation + Delta-G solvation = 80.469304 kcal Electronic energy + Delta-G solvation = -20078.661850 eV Core-core repulsion = 16974.604644 eV Total energy + Delta-G solvation = -3104.057206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 299.079 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98685 -38.86628 -37.27782 -37.05394 -36.11457 -33.12772 -32.47111 -31.85924 -29.87639 -27.39761 -25.49770 -24.03312 -23.29217 -22.50947 -21.05129 -19.30910 -18.50860 -18.38313 -17.58442 -16.92519 -15.95374 -15.90644 -15.65524 -15.33917 -15.12922 -14.95842 -14.81208 -14.72756 -14.37558 -14.03831 -13.94482 -13.55669 -13.42116 -13.37119 -13.14855 -12.98305 -12.87691 -12.80092 -12.43868 -12.37489 -12.22980 -11.68917 -11.33930 -10.91947 -10.64020 -10.45695 -10.13567 -8.87945 -8.31126 -8.00221 -6.36624 -0.28388 0.41279 0.81479 0.87547 1.38795 1.42472 1.44445 1.50308 1.62542 1.80977 1.83913 2.14621 2.38357 2.74807 2.90690 3.04145 3.08081 3.36797 3.88849 3.98551 4.19478 4.37213 4.54822 4.61047 4.65004 4.66109 4.79477 4.83865 5.01337 5.17067 5.30535 5.44401 5.57209 5.69872 5.72775 5.73737 5.97022 6.00001 6.13209 6.53044 6.65586 6.73152 7.30914 8.82453 Molecular weight = 299.08amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.004189 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.085727 B = 6682.283204 C = 7510.886651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.101 3.899 3 H 0.032 0.968 4 C -0.524 4.524 5 H 0.056 0.944 6 C 0.031 3.969 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.274 1.274 12 S -0.204 6.204 13 C -0.108 4.108 14 C -0.106 4.106 15 C -0.128 4.128 16 C -0.087 4.087 17 C -0.133 4.133 18 C 0.139 3.861 19 N -0.621 5.621 20 C 0.314 3.686 21 C -0.167 4.167 22 C 0.277 3.723 23 N -0.478 5.478 24 C 0.317 3.683 25 N -0.474 5.474 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.267 0.733 30 H 0.114 0.886 31 H 0.137 0.863 32 H 0.171 0.829 33 H 0.184 0.816 34 H 0.411 0.589 35 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.200 -0.127 -7.473 16.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.027 4.027 3 H 0.050 0.950 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.547 5.547 8 Si 0.777 3.223 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.199 1.199 12 S 0.041 5.959 13 C -0.223 4.223 14 C -0.130 4.130 15 C -0.149 4.149 16 C -0.108 4.108 17 C -0.154 4.154 18 C 0.038 3.962 19 N -0.227 5.227 20 C 0.171 3.829 21 C -0.186 4.186 22 C -0.036 4.036 23 N -0.157 5.157 24 C 0.003 3.997 25 N -0.152 5.152 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.188 0.812 33 H 0.201 0.799 34 H 0.249 0.751 35 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.702 -1.571 -9.216 15.771 hybrid contribution -0.356 0.563 2.347 2.439 sum 12.345 -1.008 -6.870 14.164 Atomic orbital electron populations 1.21525 0.95106 1.00652 1.00521 1.20856 0.96045 0.95688 0.90077 0.95011 1.21282 1.32168 1.12619 0.90201 0.92618 1.25583 0.94791 0.95405 1.01293 1.69961 1.36632 1.23507 1.24632 0.85637 0.78431 0.79059 0.79162 1.19510 1.20932 1.19855 1.84483 1.01087 1.72447 1.37834 1.21363 0.96065 1.03923 1.00983 1.21347 0.97388 0.97318 0.96943 1.21379 0.91981 1.01090 1.00447 1.21398 1.01370 0.94977 0.93035 1.21215 0.90528 1.01532 1.02139 1.17467 0.93330 0.94697 0.90752 1.42317 1.11386 1.41702 1.27329 1.22764 0.98651 0.81156 0.80298 1.12416 0.81911 1.17529 1.06744 1.25497 0.92427 0.92613 0.93057 1.81346 1.13446 1.11277 1.09632 1.24287 0.92239 0.91693 0.91473 1.81334 1.10140 1.12116 1.11642 0.94392 0.94751 0.90227 0.92411 0.86812 0.84514 0.81203 0.79872 0.75120 0.74998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.88 71.98 0.64 -4.78 16 2 C 0.10 4.68 2.01 29.85 0.06 4.74 16 3 H 0.03 1.59 7.00 -2.39 -0.02 1.57 16 4 C -0.52 -26.07 6.90 25.60 0.18 -25.90 16 5 H 0.06 2.85 7.71 -2.91 -0.02 2.83 16 6 C 0.03 1.57 5.30 84.65 0.45 2.02 16 7 N -0.91 -47.59 11.39 21.45 0.24 -47.35 16 8 Si 0.95 40.39 29.54 68.60 2.03 42.42 16 9 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 S -0.20 -7.94 19.77 -56.49 -1.12 -9.06 16 13 C -0.11 -3.52 6.05 22.72 0.14 -3.38 16 14 C -0.11 -3.53 8.80 22.39 0.20 -3.33 16 15 C -0.13 -3.06 10.04 22.28 0.22 -2.84 16 16 C -0.09 -1.35 10.04 22.28 0.22 -1.12 16 17 C -0.13 -1.87 9.30 22.38 0.21 -1.67 16 18 C 0.14 3.13 6.63 38.29 0.25 3.38 16 19 N -0.62 -12.06 5.31 -185.12 -0.98 -13.04 16 20 C 0.31 3.47 9.85 83.95 0.83 4.30 16 21 C -0.17 -2.71 5.78 -20.89 -0.12 -2.83 16 22 C 0.28 6.81 13.95 88.33 1.23 8.04 16 23 N -0.48 -14.92 18.54 19.01 0.35 -14.56 16 24 C 0.32 5.86 15.33 88.33 1.35 7.22 16 25 N -0.47 -11.08 18.54 19.00 0.35 -10.73 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.08 3.95 6.26 -2.38 -0.01 3.94 16 29 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 30 H 0.11 4.68 5.09 -2.91 -0.01 4.67 16 31 H 0.14 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.18 0.54 5.96 -2.91 -0.02 0.52 16 34 H 0.41 10.17 5.93 -92.71 -0.55 9.62 16 35 H 0.23 0.07 5.91 -2.91 -0.02 0.05 16 Total: -1.00 -65.45 327.83 7.35 -58.10 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.61 Total: 10.37 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: 5.86 Total: -16.14 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -0.03 Total: -85.68 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.12 Total: -9.06 kcal Total: -65.45 7.35 -58.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066813708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.567 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds