Wall clock time and date at job start Fri Apr 10 2020 20:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 120.00248 * 2 1 4 4 H 1.48499 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46661 * 299.99585 * 3 2 1 6 6 H 1.48502 * 109.47380 * 59.99341 * 3 2 1 7 7 C 1.38954 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00102 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00281 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47258 * 179.97438 * 12 10 9 14 14 C 1.34727 * 116.99723 * 180.02562 * 13 12 10 15 15 O 1.21482 * 120.00187 * 0.02562 * 14 13 12 16 16 C 1.47651 * 120.00013 * 180.02562 * 14 13 12 17 17 C 1.40708 * 119.75245 * 0.24898 * 16 14 13 18 18 C 1.35705 * 120.83984 * 180.30515 * 17 16 14 19 19 C 1.40714 * 120.03148 * 359.72701 * 18 17 16 20 20 C 1.40480 * 121.03833 * 179.97438 * 19 18 17 21 21 C 1.36144 * 119.71982 * 180.02562 * 20 19 18 22 22 C 1.39364 * 121.01373 * 0.02562 * 21 20 19 23 23 C 1.36093 * 120.95240 * 359.97327 * 22 21 20 24 24 C 1.40660 * 119.66335 * 0.02562 * 23 22 21 25 25 C 1.38544 * 119.75580 * 180.02562 * 16 14 13 26 26 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99906 * 359.97438 * 9 7 2 28 28 H 1.09010 * 109.46827 * 59.99999 * 12 10 9 29 29 H 1.09005 * 109.47234 * 300.00531 * 12 10 9 30 30 H 1.07999 * 119.57763 * 0.02562 * 17 16 14 31 31 H 1.07998 * 119.98515 * 179.74711 * 18 17 16 32 32 H 1.08000 * 120.14026 * 0.05182 * 20 19 18 33 33 H 1.07999 * 119.49388 * 180.02562 * 21 20 19 34 34 H 1.07997 * 119.52537 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.16560 * 180.02562 * 23 22 21 36 36 H 1.08002 * 120.28078 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2127 6 1 1.8894 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 8 2.1872 -5.9666 0.0004 14 6 1.6722 -7.2115 0.0003 15 8 0.4679 -7.3707 0.0003 16 6 2.5716 -8.3825 0.0001 17 6 3.9657 -8.1922 0.0054 18 6 4.8126 -9.2526 -0.0008 19 6 4.3003 -10.5631 -0.0070 20 6 5.1575 -11.6760 -0.0140 21 6 4.6328 -12.9322 -0.0204 22 6 3.2539 -13.1344 -0.0205 23 6 2.3920 -12.0811 -0.0138 24 6 2.8971 -10.7683 -0.0071 25 6 2.0366 -9.6605 -0.0006 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6167 -4.9209 -0.8887 29 1 0.6173 -4.9205 0.8913 30 1 4.3669 -7.1895 0.0100 31 1 5.8804 -9.0905 -0.0008 32 1 6.2284 -11.5356 -0.0140 33 1 5.2952 -13.7851 -0.0254 34 1 2.8636 -14.1413 -0.0261 35 1 1.3256 -12.2525 -0.0136 36 1 0.9659 -9.8026 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:36 Heat of formation + Delta-G solvation = -78.776126 kcal Electronic energy + Delta-G solvation = -21995.764649 eV Core-core repulsion = 18409.756421 eV Total energy + Delta-G solvation = -3586.008228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83557 -39.93076 -38.14982 -36.61171 -36.02101 -34.00285 -33.02169 -31.40103 -30.96592 -29.53009 -28.36538 -25.14301 -24.17021 -23.41220 -22.22655 -21.15966 -19.58367 -18.41022 -18.07538 -17.46861 -16.86338 -16.50296 -16.29977 -15.72914 -15.24354 -14.96195 -14.54965 -14.20828 -14.01065 -13.93482 -13.71007 -13.65114 -13.36877 -13.01628 -12.36505 -12.31384 -11.93063 -11.62612 -11.53657 -11.51364 -11.15306 -11.10534 -10.49787 -10.42161 -10.39139 -10.29884 -10.28650 -9.61837 -8.93522 -8.52739 -8.20813 -8.08533 -6.50180 -3.92141 0.05576 0.57581 1.65433 2.23460 2.66390 3.03707 3.11792 3.23873 3.31392 3.73491 3.85578 4.10620 4.30840 4.48014 4.54212 4.63487 4.81030 4.86548 4.96744 5.01963 5.07552 5.14995 5.20339 5.48885 5.50816 5.60064 5.69692 5.76973 5.85166 5.97589 6.05199 6.10974 6.19902 6.29373 6.49516 6.57325 6.65973 7.47916 7.81427 7.95654 8.48232 9.06985 9.39212 9.88911 10.67146 Molecular weight = 299.10amu Principal moments of inertia in cm(-1) A = 0.043388 B = 0.002442 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.189110 B =11464.379974 C =12094.397556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.319 6.319 14 C 0.504 3.496 15 O -0.512 6.512 16 C -0.113 4.113 17 C -0.067 4.067 18 C -0.119 4.119 19 C -0.028 4.028 20 C -0.113 4.113 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.092 4.092 24 C -0.069 4.069 25 C -0.031 4.031 26 H 0.273 0.727 27 H 0.395 0.605 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.060 -23.919 -0.019 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.017 4.017 13 O -0.234 6.234 14 C 0.348 3.652 15 O -0.402 6.402 16 C -0.114 4.114 17 C -0.085 4.085 18 C -0.136 4.136 19 C -0.028 4.028 20 C -0.131 4.131 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.110 4.110 24 C -0.069 4.069 25 C -0.049 4.049 26 H 0.083 0.917 27 H 0.229 0.771 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.390 -23.745 -0.019 24.349 hybrid contribution -0.498 0.907 0.000 1.035 sum 4.892 -22.838 -0.019 23.356 Atomic orbital electron populations 1.69621 1.06003 1.28386 1.49741 1.25322 0.95698 0.99892 0.96925 0.85738 0.79705 0.80737 0.77800 1.19085 1.20620 1.20626 1.19775 0.93501 0.81722 1.48050 0.87547 1.41710 1.09394 1.04090 1.63826 1.19299 0.88327 0.84043 0.85948 1.90557 1.13392 1.86789 1.55249 1.22785 0.90834 0.84404 1.03640 1.86589 1.39974 1.13834 1.82962 1.21202 0.87088 0.83863 0.73009 1.90818 1.16021 1.87004 1.46361 1.19103 0.93353 0.90868 1.08083 1.21227 0.91580 1.00883 0.94787 1.20989 1.00333 0.90885 1.01439 1.18295 0.92538 0.94144 0.97815 1.21083 0.99603 0.91907 1.00480 1.20941 0.95387 0.97283 0.98797 1.20864 0.93432 0.99154 1.00861 1.21106 1.00181 0.91207 0.98472 1.17985 0.92604 0.93567 1.02786 1.21511 1.00397 0.90022 0.92995 0.91675 0.77140 0.89407 0.89398 0.83548 0.84650 0.85216 0.85808 0.85755 0.85159 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -14.01 5.29 -10.96 -0.06 -14.07 16 10 C 0.44 10.61 7.86 -10.99 -0.09 10.52 16 11 O -0.58 -15.94 16.08 -14.11 -0.23 -16.16 16 12 C 0.06 1.18 5.95 36.01 0.21 1.39 16 13 O -0.32 -6.08 8.96 -47.25 -0.42 -6.50 16 14 C 0.50 8.49 7.89 34.57 0.27 8.76 16 15 O -0.51 -9.25 16.09 -19.25 -0.31 -9.56 16 16 C -0.11 -1.58 5.87 -105.01 -0.62 -2.20 16 17 C -0.07 -0.85 9.51 -39.56 -0.38 -1.23 16 18 C -0.12 -1.25 9.73 -39.55 -0.38 -1.64 16 19 C -0.03 -0.29 5.75 -106.75 -0.61 -0.90 16 20 C -0.11 -0.92 9.76 -39.49 -0.39 -1.31 16 21 C -0.11 -0.76 9.95 -39.92 -0.40 -1.16 16 22 C -0.13 -0.91 9.95 -39.93 -0.40 -1.31 16 23 C -0.09 -0.78 9.77 -39.44 -0.39 -1.17 16 24 C -0.07 -0.75 5.74 -106.85 -0.61 -1.36 16 25 C -0.03 -0.37 9.34 -38.70 -0.36 -0.73 16 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 28 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.15 1.96 7.57 -52.49 -0.40 1.56 16 31 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 33 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.12 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.58 7.61 -52.49 -0.40 1.18 16 LS Contribution 327.68 15.07 4.94 4.94 Total: -1.00 -32.70 327.68 -8.34 -41.04 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -3.59 Total: 8.26 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -4.37 Total: -0.25 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.67 Total: -37.44 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.96 Total: -32.23 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.70 -8.34 -41.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.738 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds