Wall clock time and date at job start Fri Apr 10 2020 20:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 120.00248 * 2 1 4 4 H 1.48499 * 109.47276 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46661 * 299.99585 * 3 2 1 6 6 H 1.48502 * 109.47380 * 59.99341 * 3 2 1 7 7 C 1.38954 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00243 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99999 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00102 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00281 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.47258 * 179.97438 * 12 10 9 14 14 C 1.34727 * 116.99723 * 180.02562 * 13 12 10 15 15 O 1.21482 * 120.00187 * 0.02562 * 14 13 12 16 16 C 1.47651 * 120.00013 * 180.02562 * 14 13 12 17 17 C 1.40708 * 119.75245 * 0.24898 * 16 14 13 18 18 C 1.35705 * 120.83984 * 180.30515 * 17 16 14 19 19 C 1.40714 * 120.03148 * 359.72701 * 18 17 16 20 20 C 1.40480 * 121.03833 * 179.97438 * 19 18 17 21 21 C 1.36144 * 119.71982 * 180.02562 * 20 19 18 22 22 C 1.39364 * 121.01373 * 0.02562 * 21 20 19 23 23 C 1.36093 * 120.95240 * 359.97327 * 22 21 20 24 24 C 1.40660 * 119.66335 * 0.02562 * 23 22 21 25 25 C 1.38544 * 119.75580 * 180.02562 * 16 14 13 26 26 H 0.96996 * 120.00031 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99906 * 359.97438 * 9 7 2 28 28 H 1.09010 * 109.46827 * 59.99999 * 12 10 9 29 29 H 1.09005 * 109.47234 * 300.00531 * 12 10 9 30 30 H 1.07999 * 119.57763 * 0.02562 * 17 16 14 31 31 H 1.07998 * 119.98515 * 179.74711 * 18 17 16 32 32 H 1.08000 * 120.14026 * 0.05182 * 20 19 18 33 33 H 1.07999 * 119.49388 * 180.02562 * 21 20 19 34 34 H 1.07997 * 119.52537 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.16560 * 180.02562 * 23 22 21 36 36 H 1.08002 * 120.28078 * 359.97438 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3963 -1.2127 6 1 1.8894 2.3965 1.2124 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 8 2.1872 -5.9666 0.0004 14 6 1.6722 -7.2115 0.0003 15 8 0.4679 -7.3707 0.0003 16 6 2.5716 -8.3825 0.0001 17 6 3.9657 -8.1922 0.0054 18 6 4.8126 -9.2526 -0.0008 19 6 4.3003 -10.5631 -0.0070 20 6 5.1575 -11.6760 -0.0140 21 6 4.6328 -12.9322 -0.0204 22 6 3.2539 -13.1344 -0.0205 23 6 2.3920 -12.0811 -0.0138 24 6 2.8971 -10.7683 -0.0071 25 6 2.0366 -9.6605 -0.0006 26 1 -0.4850 0.8400 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6167 -4.9209 -0.8887 29 1 0.6173 -4.9205 0.8913 30 1 4.3669 -7.1895 0.0100 31 1 5.8804 -9.0905 -0.0008 32 1 6.2284 -11.5356 -0.0140 33 1 5.2952 -13.7851 -0.0254 34 1 2.8636 -14.1413 -0.0261 35 1 1.3256 -12.2525 -0.0136 36 1 0.9659 -9.8026 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:42:36 Heat of formation + Delta-G solvation = -97.152246 kcal Electronic energy + Delta-G solvation = -21996.561497 eV Core-core repulsion = 18409.756421 eV Total energy + Delta-G solvation = -3586.805076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 299.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91777 -41.02375 -40.02464 -37.70366 -37.20877 -36.05416 -33.77870 -33.44113 -31.85492 -30.32056 -29.93710 -26.81666 -25.46598 -24.17623 -22.96068 -22.30924 -21.47052 -20.09932 -19.54294 -18.26630 -18.18846 -17.76551 -17.66672 -17.14041 -16.67891 -16.10596 -15.80197 -15.76030 -15.64140 -14.88920 -14.65513 -14.61066 -14.37388 -14.06258 -13.98321 -13.74240 -13.58032 -12.95611 -12.92639 -12.48210 -12.32297 -12.27440 -12.11414 -11.93068 -11.82409 -11.74957 -11.60218 -11.04420 -10.54333 -10.13703 -9.72227 -8.94810 -8.53942 -6.04687 -0.79122 -0.21261 0.85192 1.25672 1.27656 1.33647 1.43556 1.58220 1.84172 2.11743 2.28547 2.98284 3.07943 3.11445 3.53360 3.58339 3.82266 3.91527 3.99745 4.06099 4.11696 4.13211 4.18991 4.30975 4.40686 4.50130 4.76509 4.87048 4.98700 5.12024 5.17764 5.25332 5.29157 5.35859 5.55027 5.57629 5.72879 5.87114 5.99445 6.41890 6.53976 7.01002 7.37390 7.90693 8.63382 Molecular weight = 299.10amu Principal moments of inertia in cm(-1) A = 0.043388 B = 0.002442 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.189110 B =11464.379974 C =12094.397556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 1.000 3.000 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.437 3.563 11 O -0.616 6.616 12 C 0.071 3.929 13 O -0.337 6.337 14 C 0.505 3.495 15 O -0.530 6.530 16 C -0.140 4.140 17 C -0.090 4.090 18 C -0.109 4.109 19 C -0.041 4.041 20 C -0.121 4.121 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.104 4.104 24 C -0.085 4.085 25 C -0.024 4.024 26 H 0.281 0.719 27 H 0.400 0.600 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.607 -26.214 -0.029 26.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.822 3.178 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.195 5.195 10 C 0.224 3.776 11 O -0.503 6.503 12 C -0.007 4.007 13 O -0.252 6.252 14 C 0.352 3.648 15 O -0.421 6.421 16 C -0.141 4.141 17 C -0.108 4.108 18 C -0.126 4.126 19 C -0.041 4.041 20 C -0.139 4.139 21 C -0.116 4.116 22 C -0.136 4.136 23 C -0.121 4.121 24 C -0.085 4.085 25 C -0.043 4.043 26 H 0.091 0.909 27 H 0.235 0.765 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.177 0.823 32 H 0.171 0.829 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.904 -26.055 -0.030 26.716 hybrid contribution -0.634 1.369 0.003 1.509 sum 5.270 -24.686 -0.027 25.243 Atomic orbital electron populations 1.69679 1.06971 1.29712 1.49162 1.26158 0.96618 1.02656 0.95637 0.84778 0.78051 0.76465 0.78465 1.19540 1.19399 1.19408 1.19762 0.92943 0.83306 1.50602 0.89740 1.41741 1.09582 1.04163 1.63982 1.20035 0.88068 0.85292 0.84209 1.90521 1.15381 1.87667 1.56742 1.22576 0.90183 0.82401 1.05502 1.86593 1.40377 1.14645 1.83543 1.21709 0.87416 0.83557 0.72105 1.90787 1.16725 1.86999 1.47632 1.19047 0.93446 0.90283 1.11340 1.21109 0.91525 1.00912 0.97236 1.21241 1.01194 0.90522 0.99679 1.18581 0.92915 0.94755 0.97837 1.21385 1.00599 0.91577 1.00337 1.21402 0.95915 0.97877 0.96437 1.21302 0.93494 1.00167 0.98669 1.21366 1.01564 0.90490 0.98711 1.18219 0.92839 0.94152 1.03331 1.21634 1.00917 0.89700 0.92006 0.90931 0.76534 0.87445 0.87430 0.85238 0.82276 0.82948 0.82665 0.82803 0.83502 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 1.00 42.35 29.55 68.60 2.03 44.38 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 8 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 9 N -0.56 -29.08 5.29 -306.98 -1.62 -30.71 16 10 C 0.44 21.90 7.86 87.66 0.69 22.59 16 11 O -0.62 -35.67 16.08 15.73 0.25 -35.42 16 12 C 0.07 2.79 5.95 71.24 0.42 3.21 16 13 O -0.34 -13.38 8.96 -49.98 -0.45 -13.83 16 14 C 0.51 17.73 7.89 70.31 0.55 18.29 16 15 O -0.53 -19.58 16.09 19.89 0.32 -19.26 16 16 C -0.14 -4.09 5.87 -20.12 -0.12 -4.21 16 17 C -0.09 -2.41 9.51 22.29 0.21 -2.20 16 18 C -0.11 -2.25 9.73 22.29 0.22 -2.04 16 19 C -0.04 -0.79 5.75 -21.24 -0.12 -0.91 16 20 C -0.12 -1.61 9.76 22.33 0.22 -1.39 16 21 C -0.10 -1.00 9.95 22.05 0.22 -0.78 16 22 C -0.12 -1.26 9.95 22.04 0.22 -1.05 16 23 C -0.10 -1.52 9.77 22.36 0.22 -1.30 16 24 C -0.09 -1.75 5.74 -21.31 -0.12 -1.87 16 25 C -0.02 -0.59 9.34 22.84 0.21 -0.38 16 26 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 27 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 28 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 29 H 0.11 3.81 8.14 -2.38 -0.02 3.79 16 30 H 0.13 3.81 7.57 -2.91 -0.02 3.79 16 31 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 32 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 33 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 34 H 0.15 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.15 3.30 7.61 -2.91 -0.02 3.28 16 Total: -1.00 -72.19 327.68 5.31 -66.88 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.40 Total: 27.09 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.10 Total: 9.59 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -1.34 Total: -79.42 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: 0.12 Total: -68.51 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -72.19 5.31 -66.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.270 kcal (2) G-P(sol) polarization free energy of solvation -72.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds