Wall clock time and date at job start Fri Apr 10 2020 20:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 O 1.42901 * 109.47098 * 119.99865 * 2 1 3 5 5 C 1.35896 * 117.00114 * 155.08631 * 4 2 1 6 6 C 1.38732 * 120.05436 * 5.47013 * 5 4 2 7 7 C 1.38148 * 119.94278 * 180.30164 * 6 5 4 8 8 C 1.38267 * 120.05631 * 359.42690 * 7 6 5 9 9 S 1.76198 * 119.94423 * 180.30205 * 8 7 6 10 10 O 1.42094 * 106.40548 * 23.83464 * 9 8 7 11 11 O 1.42100 * 106.40026 * 156.75921 * 9 8 7 12 12 N 1.65602 * 107.21593 * 270.29689 * 9 8 7 13 13 C 1.46500 * 120.00146 * 65.00236 * 12 9 8 14 14 C 1.50700 * 109.47203 * 165.00062 * 13 12 9 15 15 H 1.07992 * 119.99965 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99663 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00280 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99632 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46967 * 89.99736 * 18 16 14 20 20 H 1.48497 * 109.47049 * 209.99618 * 18 16 14 21 21 H 1.48492 * 109.47192 * 329.99769 * 18 16 14 22 22 C 1.38263 * 120.10696 * 0.60124 * 8 7 6 23 23 C 1.38144 * 120.05940 * 359.67284 * 22 8 7 24 24 H 1.09000 * 109.47226 * 300.00152 * 1 2 3 25 25 H 1.09002 * 109.46912 * 60.00208 * 1 2 3 26 26 H 1.08998 * 109.46855 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47226 * 239.99848 * 2 1 3 28 28 H 1.09002 * 109.47060 * 299.99702 * 3 2 1 29 29 H 1.09000 * 109.47197 * 59.99830 * 3 2 1 30 30 H 1.08998 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.08003 * 120.03227 * 0.03196 * 6 5 4 32 32 H 1.08001 * 119.97250 * 179.70365 * 7 6 5 33 33 H 0.97001 * 120.00200 * 245.00614 * 12 9 8 34 34 H 1.09004 * 109.46786 * 284.99788 * 13 12 9 35 35 H 1.09001 * 109.47239 * 44.99771 * 13 12 9 36 36 H 0.96998 * 120.00306 * 180.02562 * 17 16 14 37 37 H 1.08004 * 119.96989 * 179.70114 * 22 8 7 38 38 H 1.07998 * 120.02708 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2474 -1.2232 1.0985 6 6 4.0364 -1.0201 -0.0244 7 6 5.2952 -1.5850 -0.0940 8 6 5.7735 -2.3424 0.9592 9 16 7.3826 -3.0549 0.8707 10 8 8.1205 -2.2662 -0.0526 11 8 7.7985 -3.2746 2.2116 12 7 7.2186 -4.5515 0.1808 13 6 6.7652 -4.6727 -1.2070 14 6 7.0469 -6.0658 -1.7077 15 1 7.5171 -6.7885 -1.0574 16 6 6.7053 -6.4174 -2.9964 17 7 6.1332 -5.5372 -3.7884 18 14 7.0552 -8.1441 -3.6172 19 1 5.8882 -9.0178 -3.3343 20 1 7.2997 -8.1036 -5.0814 21 1 8.2557 -8.6836 -2.9296 22 6 4.9889 -2.5467 2.0792 23 6 3.7272 -1.9887 2.1513 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 3.6652 -0.4245 -0.8453 32 1 5.9079 -1.4312 -0.9700 33 1 7.4228 -5.3479 0.6956 34 1 5.6938 -4.4782 -1.2574 35 1 7.2953 -3.9496 -1.8269 36 1 5.8926 -5.7846 -4.6949 37 1 5.3629 -3.1427 2.8986 38 1 3.1146 -2.1489 3.0262 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057556310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:43:23 Heat of formation + Delta-G solvation = -98.271063 kcal Electronic energy + Delta-G solvation = -22036.680760 eV Core-core repulsion = 18585.271119 eV Total energy + Delta-G solvation = -3451.409640 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 299.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42288 -37.76540 -36.66829 -35.28521 -34.60448 -33.52458 -32.14872 -31.01603 -29.96898 -27.58319 -26.73382 -23.69880 -22.89158 -22.48058 -21.09710 -19.02440 -18.50700 -17.54421 -17.04726 -16.19775 -15.88729 -15.69691 -15.27147 -14.90340 -14.57670 -14.18126 -13.95615 -13.56575 -13.41411 -13.12631 -12.84996 -12.67516 -12.58186 -12.47531 -12.15788 -12.08348 -11.78997 -11.56810 -11.49462 -11.37934 -11.06198 -10.95363 -10.78956 -10.75085 -10.52790 -10.11931 -9.43601 -9.04322 -8.91484 -8.53496 -8.22220 -6.18849 -4.23092 0.90383 1.15751 1.34966 2.92635 3.24791 3.31347 3.34681 3.46566 3.85175 4.32243 4.34816 4.45716 4.57017 4.67559 4.75774 4.83199 5.01528 5.18299 5.21059 5.22169 5.31678 5.40267 5.44405 5.55000 5.63865 5.77411 5.84688 5.95165 6.02185 6.23849 6.25653 6.45887 6.66923 7.24933 7.28232 7.34200 7.79283 7.81866 8.17790 8.81218 9.41883 10.91634 Molecular weight = 299.10amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.004417 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.903977 B = 6337.982998 C = 7647.412180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.181 4.181 4 O -0.308 6.308 5 C 0.178 3.822 6 C -0.232 4.232 7 C 0.029 3.971 8 C -0.706 4.706 9 S 2.694 3.306 10 O -0.965 6.965 11 O -0.982 6.982 12 N -1.104 6.104 13 C 0.246 3.754 14 C -0.529 4.529 15 H 0.066 0.934 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C 0.018 3.982 23 C -0.178 4.178 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.137 0.863 32 H 0.145 0.855 33 H 0.410 0.590 34 H 0.021 0.979 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.145 0.855 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.989 10.870 7.814 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 C -0.239 4.239 4 O -0.222 6.222 5 C 0.132 3.868 6 C -0.252 4.252 7 C 0.009 3.991 8 C -0.792 4.792 9 S 2.783 3.217 10 O -0.955 6.955 11 O -0.972 6.972 12 N -0.866 5.866 13 C 0.123 3.877 14 C -0.569 4.569 15 H 0.084 0.916 16 C -0.142 4.142 17 N -0.529 5.529 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.001 4.001 23 C -0.198 4.198 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.245 0.755 34 H 0.039 0.961 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.162 0.838 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.505 11.482 7.935 16.887 hybrid contribution -0.637 -1.126 -0.626 1.437 sum -10.142 10.356 7.309 16.234 Atomic orbital electron populations 1.21854 0.92235 1.03359 1.03048 1.22550 0.95597 0.92788 0.87508 1.22403 1.02485 0.95771 1.03219 1.86125 1.29242 1.67627 1.39177 1.19233 0.83722 0.89972 0.93866 1.21377 0.96660 1.07813 0.99301 1.20805 0.93901 0.88596 0.95765 1.31046 1.27245 1.18036 1.02892 1.01682 0.73815 0.73492 0.72745 1.93554 1.68064 1.69771 1.64109 1.93516 1.81121 1.85821 1.36759 1.55448 1.84187 1.22521 1.24448 1.19080 0.94640 0.99201 0.74817 1.21208 1.41004 0.96511 0.98138 0.91574 1.24964 0.94818 0.97907 0.96473 1.69930 1.40897 1.34363 1.07748 0.86414 0.78758 0.83738 0.78028 1.20533 1.21036 1.19662 1.20706 0.91450 0.92792 0.95126 1.20479 0.97413 1.02533 0.99344 0.91495 0.90360 0.91478 0.90257 0.90774 0.91418 0.91549 0.84555 0.83737 0.75543 0.96071 0.94355 0.92494 0.83755 0.84604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.16 0.36 -0.76 16 2 C 0.07 0.69 2.85 -26.73 -0.08 0.61 16 3 C -0.18 -1.49 9.17 37.16 0.34 -1.15 16 4 O -0.31 -3.83 9.80 -19.41 -0.19 -4.02 16 5 C 0.18 2.49 6.60 -39.22 -0.26 2.23 16 6 C -0.23 -3.31 8.24 -39.43 -0.32 -3.63 16 7 C 0.03 0.47 9.51 -39.60 -0.38 0.09 16 8 C -0.71 -11.93 5.95 -39.56 -0.24 -12.17 16 9 S 2.69 50.71 5.74 -107.50 -0.62 50.09 16 10 O -0.96 -20.84 16.75 -57.17 -0.96 -21.80 16 11 O -0.98 -19.10 17.28 -57.17 -0.99 -20.09 16 12 N -1.10 -22.36 5.99 -11.65 -0.07 -22.43 16 13 C 0.25 6.04 5.98 -5.19 -0.03 6.01 16 14 C -0.53 -14.11 9.27 -34.44 -0.32 -14.43 16 15 H 0.07 1.68 7.65 -52.49 -0.40 1.28 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 18 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.02 0.28 9.51 -39.61 -0.38 -0.10 16 23 C -0.18 -2.46 9.99 -39.43 -0.39 -2.86 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.77 6.32 -51.93 -0.33 0.44 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.60 6.90 -51.93 -0.36 0.24 16 31 H 0.14 1.60 5.43 -52.48 -0.28 1.32 16 32 H 0.14 2.33 7.62 -52.49 -0.40 1.93 16 33 H 0.41 7.56 8.54 -34.47 -0.29 7.27 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.04 1.01 7.75 -51.93 -0.40 0.61 16 36 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.14 1.89 7.61 -52.48 -0.40 1.49 16 38 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -32.55 334.83 -8.82 -41.37 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.96 Total: 5.19 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -1.79 Total: -24.57 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.67 Total: -46.89 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -2.14 Total: -45.91 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 50.71 SS G_CDS: -0.62 Total: 50.09 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.55 -8.82 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057556310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.901 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds